MD01G1017000.v1.1

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013218
Physical Location & Seq
Forward (+)
7613101 .. 7625569
12469 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1017000.v1.1.491

Sequence Viewer

Length: 3219 bp
ATGAGACCCATTTCTCCAAAAACCCTCTACCGCCTCTCTGCCTCTTTGCCATCCGATCCTCCTTTCCTCCTTCAGATTTCCCACCTCTCAACCTCTTCGCCATCCCACCATTCACACGCTCACTCTTCCTTCAGACGCCACGATGAGGAGGTTCGGAATGTCAGGGTTTCGGTTTGGTGGGATTTTGAGAACTGCAATTTGCCGGCCGGTGTAAATGTGTTCAAGGTAGCGAATGCAATCACTGCGGCGATCAGGGCCAATGGGATCAAAGGTCCTATCCAGATTACGGCTTTCGGGGATATGTTGCAGCTGTCAAGGTTCAACCAGGAGGCATTGTCGTCCACCGGGGTCAATCTCACCCACGTTCCTCACGGTGGAAAGAACAGTGCTGATAGGTCTCTTCTTGTAGATCTTATGTATTGGGTTTCGCAAAACCCCCCACCAGCACACCTTTTTTTAATTTCTGGTGACAGGGATTTTGCTAGCATTTTACACCGGTTAAGAATGAATAACTACAATATATTGCTAGCAAGTCCAGAAAATTCTCCTGGTGTCCTATGCAGTGCTGCAAGTATTATGTGGCCGTGGCATGCTTTGCTTACAGGTGAAACCCTTACTGGGAAGTATTTTAACCAACCACCTGATGGTCCCTATGGTTCTTGGTATGGCCATTACAAGGTTCCTCTTGAAGACCCATACTCGGTTATTGAGCAGCCGTTATTGTCACAGACTGAAAAGTTGTCTGAGCCTGGTTCAGATTCTAAGCCTCGTCCAATTCCTTTTGCAGTCAGGAAGCAAATTCATAAGATACTGAAGTCACACCCTAATGGAATTTCCATTACAGAACTTCGCATGGAGCTTGCACAATGTAATTTGCATATAGATAGAGACTTCTATGGATATAAAAAGTTTTCCCGCTTTCTTTTAGCAATTCCACATATTTTAAAGCTCAAGTCATTAGGTGATGGAAAATTTCTGGTACATGGTAGCCCAAAATCATCTGAACCATGTGAGTACAATATAGGTACATCTACAGAACCTGTTAGTGATATTGGAGACCGGGATCTCAATTCAGCTTCACAGTTAGATTGTGAGGACAGATCTATTAATGTAAGTGCCAACAGGAAGCTGTCTGGATTTACATCCCATGAACCAAATGCAGAAAAGCCTTGTGAAGAATCAGAACATCCTTCTAATAATTCTTTGAGAGATTCAGGTGTGAAGTCACAGTTGGCGCTTTCCCCTGAGAATGTGAAGTCTTTGACCAAGCCACAACAGTTTTCTCCCCATGCTGAGAAGTCAATATCCCCTCCTTCCTCAGAGAATATAAAGCCTTCTACCAAACCACAACAAATTTCTCCCCTTGATGAGAAGTCGCTCTCCCCTCCTTCCTCAAAGAATGTGAAGACTTCGGCACCCATTGACGAAGAGGTGGTTGAAGTGGCTACAGATCAAGATACTGAGCTTCATTTTTCTCTGGAAGTTGCACAAGATTCCTCATATGAGGTGGGTTATTTTAAGAGGATTTGGAGAAATTGGTTTGGCGGTAGAGTTATTGTTTCAGGGACTACAAGTCACAATGGTCCAGAAGAATTTTGCACTTCTGGTGATGACACTAAGAAGGAAGACCAAGACTCTCTGGTGAAACAGCATACTTCTGTTGATAATGCTGTGAAGGGAAATGATGAGAAAAAGCATGATGCTTCAAGTGAGGTTGTTGATCAAGCACTTCCAGCTTCATTTTCTTTATCCCACAATGAATCAGCTAAGGACAACAAAACTGCAACAACCTATCCAGTGTCTGGTAGCAAGTCTAAAACAAATCCAGGGATATTTGGTCTGATAGTAAATTGGTGTAAATTCGGGAGAAGTAGCCCATGCTCTGATAAACTGAGTGATCAATCCCGTGACAGACTGAACCTGATGGACAATCGCTCTCAAGTGAACAAGCTCTTTTCAACAGATTCTTTTTGGGCTGAAATGGAATCTTTTATGGACACACCTAAAGGATCAGTTGCTGTCTTCAAATCAAGGACCAGGGAACAAATGGCACTCAACCTTCAAAAGGAAGGACCTTTGTCTCTTAGATCTCTCTGCAAAGATGATCTTCTTCGCTTGGTCGACTTGTTAATGTCAGAAAAGAAGTGGGTTGAAGAATGCCCTTCCCAGATGTCACCTTTCAAACTTACTGATCATGGTGGAAAGAGTTCTTTGGATCAGTCTAATGGTTCAAATAGGTTGAGATCCATCTTTCTGGATCAACCATCACAACATGACATGCAGAGATCACGAGAGCATGACGGAGAGGAAAAATGTCGAAATATTCCGCTTAGTGGAGTTTCACTACCTACCATTAGGAAGACACCTCCTGACAGGTCTAAAAGTGAGATACTAGCCGACTGTCGAAAGCTTGTAAATGAGCTATTGAAAGAGCACCCAGCGGGATATAACATGGGCTTATTCAGAAAAGTGTTCTTTGATAGGTATGGCTACCACCTTGATTTGCATATGCTTGGGTATCAAAAGTTAGCAACCCTATTACAAGCCTTGCCTGGGGTGAAAGTAGAGTCGTCTCACATCCTTCCTTCTTTCACATACTCGGAACAAAAGCCTCAGAAAATGTTTGATATGAAAACTTCTGGTCTGAGTATCCAAAAACATACTGCCAGTCGTACAGCGGTTGATTCAGATGGTAATTTAACTGATGCGTCATGCAAGGATGATGGTAGCGACTCACCATGGGAAGAGCTGGGCCCTGTTGCCAACGGATCCAACAAAAATGAAGTGCAATTAGAGTCAAGGAGGAAGGCAATAGTATCAACGGGTTTTGATTATGAACCATCCCTTTCTGATGATTTTTCAGATTCAGAAGAAGAGACATCGCCTATAACTGAATCAGAAGGACAACGTGCTGCCAGAGTGAACAAAGAAGATAGCTCCTTATTGCAGATCCTTGACTCATGGTACAGCAATAAGGATGGCGAAAGTAGCAAGCACAAGTCAGAGAATGTTGATAGGACGGCTGATTCCACGAATGTCTCTAAGCTATCTGGATTCGGCATCACGAGTGGGACTTCTTTGGCAGACCATGCATGGAAGCAAAGACCTCAGAAGAGCTACTCTTTTGTTACAGACTCGTGTGGCGATAACAAGGACAAGTTAATTGATGGCATACTAGGTAGCTTGAAGAAACCAAGTGAGCCAAGGATGGAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OHA OST-HTH

Protein Analysis

1073

Amino Acids

119.07

Weight (kDa)

6.23

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 55 - 191 2.1e-28 NYN domain
OST-HTH PF12872 262 - 325 2.3e-09 OST-HTH/LOTUS domain
OST-HTH PF12872 797 - 858 2.9e-06 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09840 AT5G64710 AT5G64710
fragaria_vesca FvH4_1g23660
malus_domestica MD01G1017000.v1.1
prunus_persica Prupe.7G207600_v2.0.a1
pyrus_communis pycom01g03040
rosa_chinensis RchiOBHm_Chr2g0119261
rosa_laevigata RLG00000018460
rosa_multiflora Rmu_sc0004760.1_g000002
rosa_roxburghii Rroxscaffold_2G00124380
rosa_rugosa Rorug02G0221300 Rorug02G0221300
rosa_samantha Rh2AG279400 Rh2BG290100 Rh2DG285400 Rh2DG304400
rosa_wichuraiana Rw2G022220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1414
AccB7I CCANNNNNTGG 2 cut(s) 644, 1802
AccI GTMKAC 1 cut(s) 2121
AciI CCGC 7 cut(s) 31, 245, 916, 1545, 2327, 2441, 2678
AcoI YGGCCR 3 cut(s) 204, 581, 667
AcsI RAATTY 7 cut(s) 541, 798, 831, 971, 1353, 1592, 1859
AcuI CTGAAG 3 cut(s) 56, 115, 833
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 5 cut(s) 981, 1016, 1027, 2674, 2966
AgeI ACCGGT 1 cut(s) 495
AhdI GACNNNNNGTC 1 cut(s) 1572
AjnI CCWGG 6 cut(s) 324, 547, 748, 1825, 2036, 2551
AjuI GAANNNNNNNTTGG 2 cut(s) 1214, 1246
Alw21I GWGCWC 1 cut(s) 2436
Alw26I GTCTC 7 cut(s) 402, 882, 1050, 2085, 2577, 2870, 3043
AlwNI CAGNNNCTG 3 cut(s) 1040, 1802, 2018
AoxI GGCC 5 cut(s) 204, 255, 581, 667, 2752
ApaI GGGCCC 1 cut(s) 2756
ApeKI GCWGC 4 cut(s) 307, 566, 712, 2912
ApoI RAATTY 7 cut(s) 541, 798, 831, 971, 1353, 1592, 1859
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AseI ATTAAT 1 cut(s) 1107
AsiGI ACCGGT 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 2206
AspLEI GCGC 1 cut(s) 1237
AspS9I GGNCC 8 cut(s) 255, 272, 647, 1583, 2034, 2072, 2752, 2753
AsuC2I CCSGG 2 cut(s) 346, 1061
AsuHPI GGTGA 9 cut(s) 349, 479, 617, 974, 1619, 1654, 2166, 2569, 2727
AsuNHI GCTAGC 2 cut(s) 482, 526
AvaII GGWCC 5 cut(s) 272, 647, 1583, 2034, 2072
BaeGI GKGCMC 1 cut(s) 2756
BaeI ACNNNNGTAYC 2 cut(s) 800, 833
BalI TGGCCA 1 cut(s) 669
BamHI GGATCC 1 cut(s) 2768
BanI GGYRCC 1 cut(s) 1414
BanII GRGCYC 1 cut(s) 2756
BauI CACGAG 3 cut(s) 2289, 3064, 3136
BbsI GAAGAC 5 cut(s) 696, 1412, 1632, 2014, 2366
Bbv12I GWGCWC 1 cut(s) 2436
BbvI GCAGC 4 cut(s) 319, 553, 724, 2899
BceAI ACGGC 4 cut(s) 303, 568, 700, 3036
BciT130I CCWGG 6 cut(s) 326, 549, 750, 1827, 2038, 2553
BciVI GTATCC 1 cut(s) 2660
BclI TGATCA 3 cut(s) 1720, 1897, 2191
BcnI CCSGG 2 cut(s) 346, 1061
BcoDI GTCTC 7 cut(s) 402, 882, 1050, 2085, 2577, 2870, 3043
BfaI CTAG 5 cut(s) 483, 527, 2393, 3176, 3217
BfmI CTRYAG 2 cut(s) 1032, 1446
BfoI RGCGCY 1 cut(s) 1238
BfuI GTATCC 1 cut(s) 2660
BglII AGATCT 3 cut(s) 409, 1100, 2087
BisI GCNGC 5 cut(s) 246, 308, 567, 713, 2913
BlsI GCNGC 5 cut(s) 247, 309, 568, 714, 2914
Bme1390I CCNGG 8 cut(s) 326, 346, 549, 750, 1061, 1827, 2038, 2553
Bme18I GGWCC 5 cut(s) 272, 647, 1583, 2034, 2072
BmeRI GACNNNNNGTC 1 cut(s) 1572
BmgT120I GGNCC 8 cut(s) 255, 272, 647, 1583, 2034, 2072, 2752, 2753
BmiI GGNNCC 5 cut(s) 649, 681, 1416, 2754, 2770
BmrFI CCNGG 8 cut(s) 326, 346, 549, 750, 1061, 1827, 2038, 2553
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 3 cut(s) 1690, 2695, 3069
BmtI GCTAGC 2 cut(s) 486, 530
BmuI ACTGGG 1 cut(s) 627
BoxI GACNNNNGTC 1 cut(s) 2077
BpiI GAAGAC 5 cut(s) 696, 1412, 1632, 2014, 2366
Bpu10I CCTNAGC 1 cut(s) 1767
BpuEI CTTGAG 2 cut(s) 935, 1923
BpuMI CCSGG 2 cut(s) 346, 1061
BsaBI GATNNNNATC 1 cut(s) 1141
BsaHI GRCGYC 1 cut(s) 136
BsaI GGTCTC 2 cut(s) 402, 1050
BsaJI CCNNGG 7 cut(s) 345, 584, 1826, 2037, 2552, 2738, 3203
BsaWI WCCGGW 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bse118I RCCGGY 3 cut(s) 202, 206, 495
Bse1I ACTGG 3 cut(s) 622, 1796, 2667
Bse8I GATNNNNATC 1 cut(s) 1141
BseBI CCWGG 6 cut(s) 326, 549, 750, 1827, 2038, 2553
BseDI CCNNGG 7 cut(s) 345, 584, 1826, 2037, 2552, 2738, 3203
BseGI GGATG 9 cut(s) 50, 101, 1142, 1186, 2577, 2725, 2840, 2983, 3213
BseJI GATNNNNATC 1 cut(s) 1141
BseMII CTCAG 9 cut(s) 735, 1236, 1284, 1332, 1452, 1883, 2627, 2636, 3122
BseNI ACTGG 3 cut(s) 622, 1796, 2667
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 2756
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 4 cut(s) 319, 553, 724, 2899
BseYI CCCAGC 2 cut(s) 2437, 2749
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 206, 257, 583, 669, 2754
BshNI GGYRCC 1 cut(s) 1414
BshTI ACCGGT 1 cut(s) 495
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 2436
BsiSI CCGG 5 cut(s) 203, 207, 345, 496, 1060
BslFI GGGAC 3 cut(s) 633, 1579, 3085
BsmAI GTCTC 7 cut(s) 402, 882, 1050, 2085, 2577, 2870, 3043
BsmBI CGTCTC 1 cut(s) 2577
BsmFI GGGAC 3 cut(s) 633, 1579, 3085
BsmI GAATGC 2 cut(s) 238, 2162
BsnI GGCC 5 cut(s) 206, 257, 583, 669, 2754
Bso31I GGTCTC 2 cut(s) 402, 1050
Bsp120I GGGCCC 1 cut(s) 2752
Bsp1286I GDGCHC 2 cut(s) 2436, 2756
Bsp19I CCATGG 1 cut(s) 2738
BspACI CCGC 7 cut(s) 31, 245, 916, 1545, 2327, 2441, 2678
BspANI GGCC 5 cut(s) 206, 257, 583, 669, 2754
BspCNI CTCAG 9 cut(s) 736, 1237, 1285, 1331, 1453, 1884, 2626, 2637, 3121
BspLI GGNNCC 5 cut(s) 649, 681, 1416, 2754, 2770
BspOI GCTAGC 2 cut(s) 486, 530
BspQI GCTCTTC 2 cut(s) 2739, 3107
BspT107I GGYRCC 1 cut(s) 1414
BspTNI GGTCTC 2 cut(s) 402, 1050
BsrFI RCCGGY 3 cut(s) 202, 206, 495
BsrI ACTGG 3 cut(s) 622, 1796, 2667
BssAI RCCGGY 3 cut(s) 202, 206, 495
BssECI CCNNGG 7 cut(s) 345, 584, 1826, 2037, 2552, 2738, 3203
BssNI GRCGYC 1 cut(s) 136
BssSI CACGAG 3 cut(s) 2289, 3064, 3136
BssT1I CCWWGG 2 cut(s) 2738, 3203
Bst2BI CACGAG 3 cut(s) 2289, 3064, 3136
Bst2UI CCWGG 6 cut(s) 326, 549, 750, 1827, 2038, 2553
Bst4CI ACNGT 6 cut(s) 374, 386, 1083, 1230, 1278, 2402
Bst6I CTCTTC 7 cut(s) 100, 130, 405, 1422, 2739, 2868, 3107
BstACI GRCGYC 1 cut(s) 136
BstAPI GCANNNNNTGC 3 cut(s) 242, 595, 3089
BstC8I GCNNGC 6 cut(s) 204, 484, 528, 591, 861, 2993
BstDSI CCRYGG 2 cut(s) 584, 2738
BstENI CCTNNNNNAGG 1 cut(s) 2063
BstF5I GGATG 9 cut(s) 50, 101, 1142, 1186, 2577, 2725, 2840, 2983, 3213
BstH2I RGCGCY 1 cut(s) 1238
BstHHI GCGC 1 cut(s) 1237
BstMAI GTCTC 7 cut(s) 402, 882, 1050, 2085, 2577, 2870, 3043
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 242, 254, 595, 1733, 2988, 3089
BstNI CCWGG 6 cut(s) 326, 549, 750, 1827, 2038, 2553
BstNSI RCATGY 2 cut(s) 593, 2281
BstPAI GACNNNNGTC 1 cut(s) 2077
BstSCI CCNGG 8 cut(s) 324, 344, 547, 748, 1059, 1825, 2036, 2551
BstSFI CTRYAG 2 cut(s) 1032, 1446
BstSLI GKGCMC 1 cut(s) 2756
BstV1I GCAGC 4 cut(s) 319, 553, 724, 2899
BstV2I GAAGAC 5 cut(s) 696, 1412, 1632, 2014, 2366
BstX2I RGATCY 7 cut(s) 409, 1063, 1100, 2087, 2243, 2768, 2949
BstXI CCANNNNNNTGG 1 cut(s) 2254
BstYI RGATCY 7 cut(s) 409, 1063, 1100, 2087, 2243, 2768, 2949
BstZI CGGCCG 1 cut(s) 204
BsuI GTATCC 1 cut(s) 2660
BsuRI GGCC 5 cut(s) 206, 257, 583, 669, 2754
BtgI CCRYGG 2 cut(s) 584, 2738
BtgZI GCGATG 1 cut(s) 2865
BtsCI GGATG 9 cut(s) 50, 101, 1142, 1186, 2577, 2725, 2840, 2983, 3213
BtsI GCAGTG 2 cut(s) 240, 568
BtsIMutI CAGTG 4 cut(s) 240, 391, 568, 1803
Cac8I GCNNGC 6 cut(s) 204, 484, 528, 591, 861, 2993
CaiI CAGNNNCTG 3 cut(s) 1040, 1802, 2018
CfoI GCGC 1 cut(s) 1237
Cfr10I RCCGGY 3 cut(s) 202, 206, 495
Cfr13I GGNCC 8 cut(s) 255, 272, 647, 1583, 2034, 2072, 2752, 2753
CseI GACGC 2 cut(s) 144, 2697
Csp6I GTAC 5 cut(s) 980, 1015, 1026, 2673, 2965
CspAI ACCGGT 1 cut(s) 495
CviQI GTAC 5 cut(s) 980, 1015, 1026, 2673, 2965
DraI TTTAAA 1 cut(s) 945
DriI GACNNNNNGTC 1 cut(s) 1572
EaeI YGGCCR 3 cut(s) 204, 581, 667
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 7 cut(s) 100, 130, 405, 1422, 2739, 2868, 3107
Eam1105I GACNNNNNGTC 1 cut(s) 1572
EarI CTCTTC 7 cut(s) 100, 130, 405, 1422, 2739, 2868, 3107
EclXI CGGCCG 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 2738, 3203
Eco24I GRGCYC 1 cut(s) 2756
Eco31I GGTCTC 2 cut(s) 402, 1050
Eco47I GGWCC 5 cut(s) 272, 647, 1583, 2034, 2072
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 3 cut(s) 56, 115, 833
EcoNI CCTNNNNNAGG 1 cut(s) 2063
EcoO109I RGGNCCY 3 cut(s) 272, 2072, 2753
EcoRII CCWGG 6 cut(s) 324, 547, 748, 1825, 2036, 2551
EcoT14I CCWWGG 2 cut(s) 2738, 3203
EcoT22I ATGCAT 1 cut(s) 3094
EcoT38I GRGCYC 1 cut(s) 2756
ErhI CCWWGG 2 cut(s) 2738, 3203
Esp3I CGTCTC 1 cut(s) 2577
FalI AAGNNNNNCTT 2 cut(s) 2091, 2123
FaqI GGGAC 3 cut(s) 633, 1579, 3085
FauI CCCGC 2 cut(s) 923, 2434
FauNDI CATATG 2 cut(s) 1501, 2508
FbaI TGATCA 3 cut(s) 1720, 1897, 2191
FblI GTMKAC 1 cut(s) 2121
Fnu4HI GCNGC 5 cut(s) 246, 308, 567, 713, 2913
FokI GGATG 8 cut(s) 37, 88, 1129, 1173, 2564, 2732, 2827, 2990
FriOI GRGCYC 1 cut(s) 2756
Fsp4HI GCNGC 5 cut(s) 246, 308, 567, 713, 2913
FspBI CTAG 5 cut(s) 483, 527, 2393, 3176, 3217
GlaI GCGC 1 cut(s) 1236
GluI GCNGC 5 cut(s) 246, 308, 567, 713, 2913
GsaI CCCAGC 2 cut(s) 2441, 2753
HaeII RGCGCY 1 cut(s) 1238
HaeIII GGCC 5 cut(s) 206, 257, 583, 669, 2754
HapII CCGG 5 cut(s) 203, 207, 345, 496, 1060
HgaI GACGC 2 cut(s) 144, 2697
HhaI GCGC 1 cut(s) 1237
Hin1I GRCGYC 1 cut(s) 136
Hin6I GCGC 1 cut(s) 1235
HinP1I GCGC 1 cut(s) 1235
HincII GTYRAC 1 cut(s) 2122
HindII GTYRAC 1 cut(s) 2122
HindIII AAGCTT 1 cut(s) 2408
HpaII CCGG 5 cut(s) 203, 207, 345, 496, 1060
HphI GGTGA 9 cut(s) 349, 479, 617, 974, 1619, 1654, 2166, 2569, 2727
Hpy166II GTNNAC 4 cut(s) 342, 1945, 2122, 2923
Hpy8I GTNNAC 4 cut(s) 342, 1945, 2122, 2923
HpyCH4III ACNGT 6 cut(s) 374, 386, 1083, 1230, 1278, 2402
HpyCH4IV ACGT 2 cut(s) 363, 2908
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 254, 595, 1733, 2988, 3089
HpySE526I ACGT 2 cut(s) 363, 2908
Hsp92I GRCGYC 1 cut(s) 136
HspAI GCGC 1 cut(s) 1235
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
Ksp22I TGATCA 3 cut(s) 1720, 1897, 2191
LguI GCTCTTC 2 cut(s) 2739, 3107
LmnI GCTCC 2 cut(s) 856, 2942
Lsp1109I GCAGC 4 cut(s) 319, 553, 724, 2899
LweI GCATC 3 cut(s) 1690, 2695, 3069
MaeI CTAG 5 cut(s) 483, 527, 2393, 3176, 3217
MaeII ACGT 2 cut(s) 363, 2908
MaeIII GTNAC 8 cut(s) 467, 723, 816, 1224, 1574, 1907, 2172, 3127
MflI RGATCY 7 cut(s) 409, 1063, 1100, 2087, 2243, 2768, 2949
MhlI GDGCHC 2 cut(s) 2436, 2756
MlsI TGGCCA 1 cut(s) 669
MluNI TGGCCA 1 cut(s) 669
MlyI GAGTC 6 cut(s) 1628, 2576, 2726, 2804, 2951, 3128
MmeI TCCRAC 1 cut(s) 2796
Mox20I TGGCCA 1 cut(s) 669
Mph1103I ATGCAT 1 cut(s) 3094
MroNI GCCGGC 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 2206
MscI TGGCCA 1 cut(s) 669
MseI TTAA 9 cut(s) 458, 500, 630, 944, 1107, 1518, 2129, 2699, 3161
MslI CAYNNNNRTG 1 cut(s) 825
Msp20I TGGCCA 1 cut(s) 669
MspA1I CMGCKG 3 cut(s) 310, 2441, 2678
MspI CCGG 5 cut(s) 203, 207, 345, 496, 1060
MspR9I CCNGG 8 cut(s) 326, 346, 549, 750, 1061, 1827, 2038, 2553
Mva1269I GAATGC 2 cut(s) 238, 2162
MvaI CCWGG 6 cut(s) 326, 549, 750, 1827, 2038, 2553
MwoI GCNNNNNNNGC 6 cut(s) 242, 254, 595, 1733, 2988, 3089
NaeI GCCGGC 1 cut(s) 204
NciI CCSGG 2 cut(s) 346, 1061
NcoI CCATGG 1 cut(s) 2738
NdeI CATATG 2 cut(s) 1501, 2508
NgoMIV GCCGGC 1 cut(s) 202
NheI GCTAGC 2 cut(s) 482, 526
NlaIV GGNNCC 5 cut(s) 649, 681, 1416, 2754, 2770
NmuCI GTSAC 7 cut(s) 467, 723, 816, 1224, 1574, 1907, 2172
NsiI ATGCAT 1 cut(s) 3094
NspI RCATGY 2 cut(s) 593, 2281
PaeI GCATGC 1 cut(s) 593
PciSI GCTCTTC 2 cut(s) 2739, 3107
PctI GAATGC 2 cut(s) 238, 2162
PdiI GCCGGC 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 2206
PflMI CCANNNNNTGG 2 cut(s) 644, 1802
PinAI ACCGGT 1 cut(s) 495
PkrI GCNGC 5 cut(s) 247, 309, 568, 714, 2914
PleI GAGTC 6 cut(s) 1628, 2575, 2726, 2803, 2951, 3128
PpsI GAGTC 6 cut(s) 1628, 2575, 2726, 2803, 2951, 3128
PpuMI RGGWCCY 2 cut(s) 272, 2072
PshAI GACNNNNGTC 1 cut(s) 2077
PshBI ATTAAT 1 cut(s) 1107
Psp5II RGGWCCY 2 cut(s) 272, 2072
Psp6I CCWGG 6 cut(s) 324, 547, 748, 1825, 2036, 2551
PspFI CCCAGC 2 cut(s) 2437, 2749
PspGI CCWGG 6 cut(s) 324, 547, 748, 1825, 2036, 2551
PspN4I GGNNCC 5 cut(s) 649, 681, 1416, 2754, 2770
PspOMI GGGCCC 1 cut(s) 2752
PspPI GGNCC 8 cut(s) 255, 272, 647, 1583, 2034, 2072, 2752, 2753
PspPPI RGGWCCY 2 cut(s) 272, 2072
PstNI CAGNNNCTG 3 cut(s) 1040, 1802, 2018
PsuI RGATCY 7 cut(s) 409, 1063, 1100, 2087, 2243, 2768, 2949
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 5 cut(s) 981, 1016, 1027, 2674, 2966
RsaNI GTAC 5 cut(s) 980, 1015, 1026, 2673, 2965
RseI CAYNNNNRTG 1 cut(s) 825
SalI GTCGAC 1 cut(s) 2120
SapI GCTCTTC 2 cut(s) 2739, 3107
SaqAI TTAA 9 cut(s) 458, 500, 630, 944, 1107, 1518, 2129, 2699, 3161
SatI GCNGC 5 cut(s) 246, 308, 567, 713, 2913
Sau96I GGNCC 8 cut(s) 255, 272, 647, 1583, 2034, 2072, 2752, 2753
SchI GAGTC 6 cut(s) 1628, 2576, 2726, 2804, 2951, 3128
ScrFI CCNGG 8 cut(s) 326, 346, 549, 750, 1061, 1827, 2038, 2553
SduI GDGCHC 2 cut(s) 2436, 2756
SfaNI GCATC 3 cut(s) 1690, 2695, 3069
SfcI CTRYAG 2 cut(s) 1032, 1446
SinI GGWCC 5 cut(s) 272, 647, 1583, 2034, 2072
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 2 cut(s) 950, 1938
SmoI CTYRAG 2 cut(s) 950, 1938
SphI GCATGC 1 cut(s) 593
SsiI CCGC 7 cut(s) 31, 245, 916, 1545, 2327, 2441, 2678
SspI AATATT 1 cut(s) 2323
SspMI CTAG 5 cut(s) 483, 527, 2393, 3176, 3217
StyD4I CCNGG 8 cut(s) 324, 344, 547, 748, 1059, 1825, 2036, 2551
StyI CCWWGG 2 cut(s) 2738, 3203
TaaI ACNGT 6 cut(s) 374, 386, 1083, 1230, 1278, 2402
TaiI ACGT 2 cut(s) 366, 2911
TaqI TCGA 3 cut(s) 2121, 2317, 2404
TatI WGTACW 1 cut(s) 1014
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 9 cut(s) 458, 500, 630, 944, 1107, 1518, 2129, 2699, 3161
Tru9I TTAA 9 cut(s) 458, 500, 630, 944, 1107, 1518, 2129, 2699, 3161
TscAI CASTG 4 cut(s) 247, 391, 568, 1803
TseFI GTSAC 7 cut(s) 467, 723, 816, 1224, 1574, 1907, 2172
TseI GCWGC 4 cut(s) 307, 566, 712, 2912
Tsp45I GTSAC 7 cut(s) 467, 723, 816, 1224, 1574, 1907, 2172
TspDTI ATGAA 9 cut(s) 521, 791, 1164, 1457, 1728, 1773, 2645, 2796, 2850
TspGWI ACGGA 2 cut(s) 2316, 2781
TspRI CASTG 4 cut(s) 247, 391, 568, 1803
Van91I CCANNNNNTGG 2 cut(s) 644, 1802
VpaK11BI GGWCC 5 cut(s) 272, 647, 1583, 2034, 2072
VspI ATTAAT 1 cut(s) 1107
XagI CCTNNNNNAGG 1 cut(s) 2063
XapI RAATTY 7 cut(s) 541, 798, 831, 971, 1353, 1592, 1859
XceI RCATGY 2 cut(s) 593, 2281
XcmI CCANNNNNNNNNTGG 2 cut(s) 641, 2044
XmiI GTMKAC 1 cut(s) 2121
XmnI GAANNNNTTC 1 cut(s) 2206
XspI CTAG 5 cut(s) 483, 527, 2393, 3176, 3217
Zsp2I ATGCAT 1 cut(s) 3094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.