MD01G1080700.v1.1

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017387
Physical Location & Seq
Reverse (-)
18787499 .. 18788588
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1080700.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGGGGCTATGAGGGTGATGGAATGGTCTGCAGAATCTGCTACAAAAGCTTATTTTGATACCCTAAAACTGTGCAATGACCGTGGGAGACAATGTGTCTCATGGAAAACACAAGAGCCAGGCAGCAATGAATTTGTTTCAGCTTTGGCTGCCGGCATGAAAGCCAAACTCATAGTGGAGGTGACCTCGACAGTTTCGCCATCAACGATAGCCTTAGCAGTTGCTGCAAAACACACAGGAGGAAAACTGGTTTGCATTCTTCCCGAGCCAGTCCTCAATGAATCAAAGAAAGTAATCAGAGACTTAGGCCTTAAAGACTTGGTGGAGTTCAAGACCAGTGACCCTTCTGAGCTGTTGTCGAATTACAAGAACATTGATTTCTCTGTGGTTGATTGCAAGAATGATGATTACACAAGGCTGCTGAAGTTGCTAGATGTTAACCCTAGAAAATCAGTGGTTGTGGCTAATAACTTGGTTGGTGAAAGAAAGGGGTTGGAAGGGCATTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

171

Amino Acids

18.7

Weight (kDa)

7.63

Isoelectric Point (pI)

14.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 8 - 158 3.3e-23 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017387)

Species Orthologous Gene IDs
malus_domestica MD01G1080700.v1.1 MD07G1149600.v1.1 MD07G1149700.v1.1
prunus_persica Prupe.2G188300_v2.0.a1
pyrus_communis pycom07g14830
rosa_chinensis RchiOBHm_Chr1g0359471
rosa_laevigata RLG00000027868
rosa_multiflora Rmu_sc0002556.1_g000003
rosa_roxburghii Rroxscaffold_4G00296980
rosa_samantha Rh1AG284800 Rh1BG250800 Rh1DG279900
rosa_wichuraiana Rw1G025320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 443
AgsI TTSAA 1 cut(s) 331
AhdI GACNNNNNGTC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 3 cut(s) 50, 143, 352
AluI AGCT 3 cut(s) 50, 143, 352
Alw26I GTCTC 3 cut(s) 82, 103, 294
AlwNI CAGNNNCTG 2 cut(s) 38, 224
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 4 cut(s) 123, 149, 224, 418
ApoI RAATTY 1 cut(s) 131
AsuHPI GGTGA 3 cut(s) 28, 193, 491
AvaI CYCGRG 1 cut(s) 263
BbvI GCAGC 4 cut(s) 135, 136, 211, 405
BccI CCATC 2 cut(s) 13, 208
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 82, 103, 294
BfaI CTAG 2 cut(s) 431, 444
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 4 cut(s) 124, 150, 225, 419
BlsI GCNGC 4 cut(s) 125, 151, 226, 420
Bme1390I CCNGG 1 cut(s) 120
BmeRI GACNNNNNGTC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 252, 269, 336
Bse3DI GCAATG 2 cut(s) 82, 133
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 82
BseMI GCAATG 2 cut(s) 82, 133
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 3 cut(s) 252, 269, 336
BseXI GCAGC 4 cut(s) 135, 136, 211, 405
BshFI GGCC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 153
BsmAI GTCTC 3 cut(s) 82, 103, 294
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 263
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 34
BsrDI GCAATG 2 cut(s) 82, 133
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 3 cut(s) 252, 269, 336
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 72, 83, 193
BstAPI GCANNNNNTGC 2 cut(s) 38, 224
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 214, 304, 348
BstDSI CCRYGG 1 cut(s) 82
BstEII GGTNACC 1 cut(s) 181
BstMAI GTCTC 3 cut(s) 82, 103, 294
BstMWI GCNNNNNNNGC 5 cut(s) 38, 47, 149, 224, 427
BstNI CCWGG 1 cut(s) 120
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 4 cut(s) 135, 136, 211, 405
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 343, 459
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 2 cut(s) 38, 224
Cfr10I RCCGGY 1 cut(s) 152
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 2 cut(s) 102, 157
DdeI CTNAG 3 cut(s) 214, 304, 348
DriI GACNNNNNGTC 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 1 cut(s) 263
Eco91I GGTNACC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 118
FaeI CATG 2 cut(s) 105, 160
FaiI YATR 4 cut(s) 11, 103, 158, 173
FatI CATG 2 cut(s) 101, 156
Fnu4HI GCNGC 4 cut(s) 124, 150, 225, 419
Fsp4HI GCNGC 4 cut(s) 124, 150, 225, 419
FspBI CTAG 2 cut(s) 431, 444
GluI GCNGC 4 cut(s) 124, 150, 225, 419
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 105, 160
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 2 cut(s) 35, 281
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 1 cut(s) 153
HphI GGTGA 3 cut(s) 28, 193, 491
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 2 cut(s) 299, 349
Hpy188III TCNNGA 2 cut(s) 263, 331
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 354, 491
HpyCH4III ACNGT 3 cut(s) 72, 83, 193
HpyCH4V TGCA 5 cut(s) 32, 75, 227, 255, 396
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 47, 149, 224, 427
HpyF3I CTNAG 3 cut(s) 214, 304, 348
Hsp92II CATG 2 cut(s) 105, 160
KroI GCCGGC 1 cut(s) 152
KroNI GCCGGC 1 cut(s) 154
KspAI GTTAAC 1 cut(s) 439
LpnPI CCDG 7 cut(s) 105, 132, 166, 222, 233, 282, 349
Lsp1109I GCAGC 4 cut(s) 135, 136, 211, 405
MaeI CTAG 2 cut(s) 431, 444
MaeIII GTNAC 2 cut(s) 181, 338
MboII GAAGA 1 cut(s) 251
MluCI AATT 2 cut(s) 131, 361
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 5 cut(s) 6, 172, 196, 233, 284
MroNI GCCGGC 1 cut(s) 152
MseI TTAA 2 cut(s) 312, 438
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 5 cut(s) 38, 47, 149, 224, 427
NaeI GCCGGC 1 cut(s) 154
NgoMIV GCCGGC 1 cut(s) 152
NlaIII CATG 2 cut(s) 105, 160
NmuCI GTSAC 2 cut(s) 181, 338
PceI AGGCCT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PctI GAATGC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 154
PfeI GAWTC 2 cut(s) 35, 281
PkrI GCNGC 4 cut(s) 125, 151, 226, 420
Psp6I CCWGG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 118
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 2 cut(s) 38, 224
SaqAI TTAA 2 cut(s) 312, 438
SatI GCNGC 4 cut(s) 124, 150, 225, 419
ScrFI CCNGG 1 cut(s) 120
SetI ASST 5 cut(s) 52, 145, 183, 188, 354
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 131, 361
SseBI AGGCCT 1 cut(s) 309
SspMI CTAG 2 cut(s) 431, 444
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 72, 83, 193
TaqI TCGA 2 cut(s) 188, 359
TasI AATT 2 cut(s) 131, 361
TfiI GAWTC 2 cut(s) 35, 281
Tru1I TTAA 2 cut(s) 312, 438
Tru9I TTAA 2 cut(s) 312, 438
TscAI CASTG 2 cut(s) 343, 459
TseFI GTSAC 2 cut(s) 181, 338
TseI GCWGC 4 cut(s) 123, 149, 224, 418
Tsp45I GTSAC 2 cut(s) 181, 338
TspDTI ATGAA 3 cut(s) 144, 173, 294
TspRI CASTG 2 cut(s) 343, 459
XapI RAATTY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 2 cut(s) 431, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.