MD07G1149700.v1.1

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017387
Physical Location & Seq
Reverse (-)
21815226 .. 21815783
558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1149700.v1.1.491

Sequence Viewer

Length: 558 bp
ATGAAAGCCAAACTCATAGTGGAGGTCACCTCAAGTGTTTCCCCGTCAACGATAGCCCTAGCAGCTGCTGCAAAACACACAGGTGGAAAATTGGTTTGCATTCTTCCGGAGCCAGTCCTTAATGAATCAAAGAAAGTTATCAGAGACTCAGGCCTTAAAGACTTGGTAGAGTTCAAGACCGGTGACCCTTTTGAGCTCTTGTTGAATTACGAGAACATTGATTTTTCTCTGGTTGATTGCAAGAACGATGAGTACACAAGGCTGTTGAAGTTGCTTGATGTTAACCCTAGAAAATCAGTGGTTGTGGCTAATAACTTGGTTGGTGAAAGAAAAGGATTGGAAGGGAATTTAGGAGAGAAAAAGAAGAGGGTTCCGGTAAGGTCTACGAAGCATCCGATAGGAAAAGGAATGGAGGTCACAATGATTGGGAAGAATATTGATCAGAGAGGAAATGAAAATTGGGGTGGAGGAAGAAAGAAGACGAGTGGTAAGAGCAAATGGGTTGTCAAGGTTGATGAGAAGAGTGGTGAGGAACATATCTTTAGGGTTCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

186

Amino Acids

20.35

Weight (kDa)

9.52

Isoelectric Point (pI)

22.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 3 - 182 4.5e-20 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017387)

Species Orthologous Gene IDs
malus_domestica MD01G1080700.v1.1 MD07G1149600.v1.1 MD07G1149700.v1.1
prunus_persica Prupe.2G188300_v2.0.a1
pyrus_communis pycom07g14830
rosa_chinensis RchiOBHm_Chr1g0359471
rosa_laevigata RLG00000027868
rosa_multiflora Rmu_sc0002556.1_g000003
rosa_roxburghii Rroxscaffold_4G00296980
rosa_samantha Rh1AG284800 Rh1BG250800 Rh1DG279900
rosa_wichuraiana Rw1G025320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 383
AccIII TCCGGA 1 cut(s) 106
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 1 cut(s) 254
AgeI ACCGGT 1 cut(s) 179
AgsI TTSAA 3 cut(s) 175, 205, 268
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 2 cut(s) 65, 196
AluI AGCT 2 cut(s) 65, 196
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 62, 65, 68
ApoI RAATTY 1 cut(s) 346
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
AsiGI ACCGGT 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 19, 194, 335, 539
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 52, 55, 74
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 59, 288
BisI GCNGC 3 cut(s) 63, 66, 69
BlsI GCNGC 3 cut(s) 64, 67, 70
Bme1390I CCNGG 1 cut(s) 552
BmiI GGNNCC 3 cut(s) 111, 372, 549
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpuEI CTTGAG 1 cut(s) 16
BsaWI WCCGGW 3 cut(s) 106, 179, 373
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 552
BseGI GGATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 52, 55, 74
BshFI GGCC 1 cut(s) 153
BshTI ACCGGT 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 107, 180, 374
BsmAI GTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 439
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 161
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 111, 372, 549
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 179
BssMI GATC 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 552
Bst6I CTCTTC 2 cut(s) 359, 515
BstAPI GCANNNNNTGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 148
BstEII GGTNACC 2 cut(s) 25, 182
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 62, 68
BstNI CCWGG 1 cut(s) 552
BstPI GGTNACC 2 cut(s) 25, 182
BstSCI CCNGG 1 cut(s) 550
BstV1I GCAGC 3 cut(s) 52, 55, 74
BstV2I GAAGAC 1 cut(s) 485
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 179
Csp6I GTAC 1 cut(s) 253
CspAI ACCGGT 1 cut(s) 179
CviJI RGCY 9 cut(s) 8, 56, 65, 112, 153, 196, 262, 308, 555
CviKI_1 RGCY 9 cut(s) 8, 56, 65, 112, 153, 196, 262, 308, 555
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 148
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
Eam1104I CTCTTC 2 cut(s) 359, 515
EarI CTCTTC 2 cut(s) 359, 515
Ecl136II GAGCTC 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco91I GGTNACC 2 cut(s) 25, 182
EcoICRI GAGCTC 1 cut(s) 196
EcoO65I GGTNACC 2 cut(s) 25, 182
EcoRII CCWGG 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 198
FaiI YATR 2 cut(s) 17, 537
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 3 cut(s) 63, 66, 69
FokI GGATG 1 cut(s) 378
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 3 cut(s) 63, 66, 69
FspBI CTAG 2 cut(s) 59, 288
GluI GCNGC 3 cut(s) 63, 66, 69
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 107, 180, 374
HincII GTYRAC 2 cut(s) 48, 283
HindII GTYRAC 2 cut(s) 48, 283
HinfI GANTC 2 cut(s) 125, 146
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 3 cut(s) 107, 180, 374
HphI GGTGA 4 cut(s) 19, 194, 335, 539
Hpy166II GTNNAC 4 cut(s) 48, 255, 283, 384
Hpy188I TCNGA 3 cut(s) 143, 396, 444
Hpy188III TCNNGA 2 cut(s) 107, 175
Hpy8I GTNNAC 4 cut(s) 48, 255, 283, 384
HpyAV CCTTC 1 cut(s) 335
HpyCH4V TGCA 3 cut(s) 71, 99, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 68
HpyF3I CTNAG 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 439
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 66, 120, 126, 135, 193, 215, 387, 537
Lsp1109I GCAGC 3 cut(s) 52, 55, 74
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 59, 288
MaeIII GTNAC 3 cut(s) 25, 182, 415
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 6 cut(s) 95, 376, 442, 483, 490, 532
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 4 cut(s) 89, 205, 346, 457
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 7 cut(s) 16, 40, 360, 406, 440, 461, 523
MroI TCCGGA 1 cut(s) 106
MseI TTAA 3 cut(s) 120, 156, 282
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 3 cut(s) 107, 180, 374
MspR9I CCNGG 1 cut(s) 552
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 62, 68
NdeII GATC 1 cut(s) 439
NlaIV GGNNCC 3 cut(s) 111, 372, 549
NmuCI GTSAC 3 cut(s) 25, 182, 415
OliI CACNNNNGTG 1 cut(s) 81
PceI AGGCCT 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 392
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 179
PkrI GCNGC 3 cut(s) 64, 67, 70
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 550
PspEI GGTNACC 2 cut(s) 25, 182
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 3 cut(s) 111, 372, 549
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PstNI CAGNNNCTG 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 120, 156, 282
SatI GCNGC 3 cut(s) 63, 66, 69
Sau3AI GATC 1 cut(s) 439
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 198
SetI ASST 8 cut(s) 27, 32, 67, 85, 198, 383, 417, 513
SfaNI GCATC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 4 cut(s) 89, 205, 346, 457
SseBI AGGCCT 1 cut(s) 153
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 59, 288
SstI GAGCTC 1 cut(s) 198
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 550
TasI AATT 4 cut(s) 89, 205, 346, 457
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 120, 156, 282
Tru9I TTAA 3 cut(s) 120, 156, 282
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 3 cut(s) 25, 182, 415
TseI GCWGC 3 cut(s) 62, 65, 68
Tsp45I GTSAC 3 cut(s) 25, 182, 415
TspDTI ATGAA 3 cut(s) 17, 138, 468
TspRI CASTG 1 cut(s) 303
XapI RAATTY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 2 cut(s) 59, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.