pycom07g14830

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017387
Physical Location & Seq
Reverse (-)
16882735 .. 16883983
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g14830.2

Sequence Viewer

Length: 903 bp
ATGAACAGTAGATCACAAACATTAAACCAGGACTGCACTAAGCGTTTTAATTCTAGTCCTGAACGTCACGAGAGAAAAACACGTTCTAATCCCTTGTCCTTGATTGTTATTGCTCAAGTTTTATTGCATCTTCTATCATTTGTGGTTAGTGCAAACTTAGGAATTGGAACAATTTATACGAATCAGATCATTGGGGCTATGAGGATGATGGAATGGTCCGCAGCATCTGCTACAAACGCTTATTTTGACACCCTAAAACTGTGTAATGACCGCAGAAGACAATGTGGCTCATGGAAAACACAAGAGCCAGGCAGCAATGAATTTGTATCGGCCTTGGCTGCTGGCATGAAAGCCAAACTTATAGTGGAGGTCACCTCAAGTGTTTCGCCATCAACGATAGCCCTAGCAGCTGCTGCAAAACACACAGGTGGAAAATTGGTTTGCATTCTTCCGGAGCCAGTCCTTGATGAATCAAAGAAAGTAATCAGAGACTTAGGCCTTAAAGACTTGGTAGAGTTCAAGACCGGTGACCCTTTTGAGCTCTTGTCAAATTACGAGAACATTGATTTTTCTCTGGTTGATTGCAAGAACGATGAGTACACAAGGCTGTTGAAGTTGCTTGATGTTAACCCTAGAAAATCAGTGGTTGTGGCTAATAACTTGGTTGGTGAAAGAAAAGGATTGGAAGGGAATTTAGGAGTGAAAGAGAAGAGGGTTCCAGTAAGGTCTACGAAGCATCCGATAGGAAAAGGAATGGAGGTCACAATGATTGGTAAGAATAGTGATCAGAGAGGAAATGAAAATTGGGGTGGAGGAAGAAAGAAGACGAGTGGTAAGAGCAAATGGGTTGTCAAGGTTGATGAGAAGAGTGGTGAGGAACATATCTTTAGGGTTCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

301

Amino Acids

33.1

Weight (kDa)

9.48

Isoelectric Point (pI)

26.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017387)

Species Orthologous Gene IDs
malus_domestica MD01G1080700.v1.1 MD07G1149600.v1.1 MD07G1149700.v1.1
prunus_persica Prupe.2G188300_v2.0.a1
pyrus_communis pycom07g14830
rosa_chinensis RchiOBHm_Chr1g0359471
rosa_laevigata RLG00000027868
rosa_multiflora Rmu_sc0002556.1_g000003
rosa_roxburghii Rroxscaffold_4G00296980
rosa_samantha Rh1AG284800 Rh1BG250800 Rh1DG279900
rosa_wichuraiana Rw1G025320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 728
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 2 cut(s) 219, 271
AcsI RAATTY 2 cut(s) 320, 691
AfaI GTAC 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 80
AgeI ACCGGT 1 cut(s) 524
AgsI TTSAA 2 cut(s) 520, 613
AjnI CCWGG 3 cut(s) 27, 307, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 787, 819
AleI CACNNNNGTG 1 cut(s) 426
AluBI AGCT 2 cut(s) 410, 541
AluI AGCT 2 cut(s) 410, 541
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 1 cut(s) 483
AlwNI CAGNNNCTG 2 cut(s) 227, 413
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 2 cut(s) 330, 496
ApeKI GCWGC 6 cut(s) 221, 312, 338, 407, 410, 413
ApoI RAATTY 2 cut(s) 320, 691
ArsI GACNNNNNNTTYG 2 cut(s) 834, 866
AsiGI ACCGGT 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 4 cut(s) 364, 539, 680, 884
AvaII GGWCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 543
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 283, 830
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 6 cut(s) 233, 324, 325, 397, 400, 419
BccI CCATC 2 cut(s) 202, 397
BciT130I CCWGG 3 cut(s) 29, 309, 897
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 3 cut(s) 54, 404, 633
BisI GCNGC 6 cut(s) 222, 313, 339, 408, 411, 414
BlsI GCNGC 6 cut(s) 223, 314, 340, 409, 412, 415
Bme1390I CCNGG 3 cut(s) 29, 309, 897
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 3 cut(s) 456, 717, 894
BmrFI CCNGG 3 cut(s) 29, 309, 897
BmsI GCATC 3 cut(s) 136, 233, 745
BpiI GAAGAC 2 cut(s) 283, 830
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpuEI CTTGAG 2 cut(s) 99, 361
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 2 cut(s) 451, 524
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 2 cut(s) 458, 719
Bse3DI GCAATG 1 cut(s) 322
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 3 cut(s) 29, 309, 897
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 210, 736
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 2 cut(s) 458, 719
BseXI GCAGC 6 cut(s) 233, 324, 325, 397, 400, 419
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 2 cut(s) 332, 498
BshTI ACCGGT 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 2 cut(s) 452, 525
BsmAI GTCTC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 2 cut(s) 332, 498
Bsp1286I GDGCHC 1 cut(s) 543
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 3 cut(s) 11, 186, 784
BspACI CCGC 2 cut(s) 219, 271
BspANI GGCC 2 cut(s) 332, 498
BspEI TCCGGA 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 456, 717, 894
BsrDI GCAATG 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 524
BsrI ACTGG 2 cut(s) 458, 719
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 3 cut(s) 11, 186, 784
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 3 cut(s) 29, 309, 897
Bst4CI ACNGT 2 cut(s) 8, 261
Bst6I CTCTTC 2 cut(s) 704, 860
BstAPI GCANNNNNTGC 2 cut(s) 227, 413
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 39, 157, 493
BstEII GGTNACC 2 cut(s) 370, 527
BstF5I GGATG 2 cut(s) 210, 736
BstKTI GATC 3 cut(s) 14, 189, 787
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 3 cut(s) 11, 186, 784
BstMWI GCNNNNNNNGC 5 cut(s) 227, 236, 338, 407, 413
BstNI CCWGG 3 cut(s) 29, 309, 897
BstPI GGTNACC 2 cut(s) 370, 527
BstSCI CCNGG 3 cut(s) 27, 307, 895
BstV1I GCAGC 6 cut(s) 233, 324, 325, 397, 400, 419
BstV2I GAAGAC 2 cut(s) 283, 830
BsuRI GGCC 2 cut(s) 332, 498
BtsCI GGATG 2 cut(s) 210, 736
BtsIMutI CAGTG 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 2 cut(s) 227, 413
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 598
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 2 cut(s) 291, 346
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 3 cut(s) 39, 157, 493
DpnI GATC 3 cut(s) 13, 188, 786
DpnII GATC 3 cut(s) 11, 186, 784
Eam1104I CTCTTC 2 cut(s) 704, 860
EarI CTCTTC 2 cut(s) 704, 860
Ecl136II GAGCTC 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 541
Eco91I GGTNACC 2 cut(s) 370, 527
EcoICRI GAGCTC 1 cut(s) 541
EcoO65I GGTNACC 2 cut(s) 370, 527
EcoRII CCWGG 3 cut(s) 27, 307, 895
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 2 cut(s) 294, 349
FaiI YATR 6 cut(s) 177, 200, 292, 347, 362, 882
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 2 cut(s) 290, 345
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 1 cut(s) 728
Fnu4HI GCNGC 6 cut(s) 222, 313, 339, 408, 411, 414
FokI GGATG 2 cut(s) 217, 723
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 6 cut(s) 222, 313, 339, 408, 411, 414
FspBI CTAG 3 cut(s) 54, 404, 633
GluI GCNGC 6 cut(s) 222, 313, 339, 408, 411, 414
HaeIII GGCC 2 cut(s) 332, 498
HapII CCGG 2 cut(s) 452, 525
Hin1II CATG 2 cut(s) 294, 349
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 2 cut(s) 181, 470
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 2 cut(s) 452, 525
HphI GGTGA 4 cut(s) 364, 539, 680, 884
Hpy166II GTNNAC 3 cut(s) 600, 628, 729
Hpy188I TCNGA 4 cut(s) 186, 488, 741, 789
Hpy188III TCNNGA 4 cut(s) 59, 68, 452, 520
Hpy8I GTNNAC 3 cut(s) 600, 628, 729
HpyAV CCTTC 1 cut(s) 680
HpyCH4III ACNGT 2 cut(s) 8, 261
HpyCH4IV ACGT 2 cut(s) 64, 82
HpyCH4V TGCA 6 cut(s) 36, 127, 152, 416, 444, 585
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 236, 338, 407, 413
HpyF3I CTNAG 3 cut(s) 39, 157, 493
HpySE526I ACGT 2 cut(s) 64, 82
Hsp92II CATG 2 cut(s) 294, 349
Kpn2I TCCGGA 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 784
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 3 cut(s) 11, 186, 784
LmnI GCTCC 1 cut(s) 454
Lsp1109I GCAGC 6 cut(s) 233, 324, 325, 397, 400, 419
LweI GCATC 3 cut(s) 136, 233, 745
MaeI CTAG 3 cut(s) 54, 404, 633
MaeII ACGT 2 cut(s) 64, 82
MaeIII GTNAC 4 cut(s) 65, 370, 527, 760
MalI GATC 3 cut(s) 13, 188, 786
MboI GATC 3 cut(s) 11, 186, 784
MboII GAAGA 7 cut(s) 122, 288, 440, 721, 828, 835, 877
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 8 cut(s) 49, 162, 171, 320, 434, 550, 691, 802
MnlI CCTC 8 cut(s) 195, 361, 385, 705, 751, 785, 806, 868
MroI TCCGGA 1 cut(s) 451
MseI TTAA 4 cut(s) 23, 48, 501, 627
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 452, 525
MspR9I CCNGG 3 cut(s) 29, 309, 897
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 3 cut(s) 29, 309, 897
MwoI GCNNNNNNNGC 5 cut(s) 227, 236, 338, 407, 413
NdeII GATC 3 cut(s) 11, 186, 784
NlaIII CATG 2 cut(s) 294, 349
NlaIV GGNNCC 3 cut(s) 456, 717, 894
NmuCI GTSAC 4 cut(s) 65, 370, 527, 760
OliI CACNNNNGTG 1 cut(s) 426
PceI AGGCCT 1 cut(s) 498
PcsI WCGNNNNNNNCGW 2 cut(s) 392, 737
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 181, 470
PinAI ACCGGT 1 cut(s) 524
PkrI GCNGC 6 cut(s) 223, 314, 340, 409, 412, 415
Psp124BI GAGCTC 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 27, 307, 895
PspEI GGTNACC 2 cut(s) 370, 527
PspGI CCWGG 3 cut(s) 27, 307, 895
PspN4I GGNNCC 3 cut(s) 456, 717, 894
PspPI GGNCC 1 cut(s) 216
PsrI GAACNNNNNNTAC 4 cut(s) 160, 192, 581, 613
PstNI CAGNNNCTG 2 cut(s) 227, 413
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 23, 48, 501, 627
SatI GCNGC 6 cut(s) 222, 313, 339, 408, 411, 414
Sau3AI GATC 3 cut(s) 11, 186, 784
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 3 cut(s) 29, 309, 897
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 3 cut(s) 136, 233, 745
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 114, 376
SmoI CTYRAG 2 cut(s) 114, 376
Sse9I AATT 8 cut(s) 49, 162, 171, 320, 434, 550, 691, 802
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 2 cut(s) 219, 271
SspMI CTAG 3 cut(s) 54, 404, 633
SstI GAGCTC 1 cut(s) 543
StuI AGGCCT 1 cut(s) 498
StyD4I CCNGG 3 cut(s) 27, 307, 895
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 8, 261
TaiI ACGT 2 cut(s) 67, 85
TasI AATT 8 cut(s) 49, 162, 171, 320, 434, 550, 691, 802
TatI WGTACW 1 cut(s) 597
TfiI GAWTC 2 cut(s) 181, 470
Tru1I TTAA 4 cut(s) 23, 48, 501, 627
Tru9I TTAA 4 cut(s) 23, 48, 501, 627
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 4 cut(s) 65, 370, 527, 760
TseI GCWGC 6 cut(s) 221, 312, 338, 407, 410, 413
Tsp45I GTSAC 4 cut(s) 65, 370, 527, 760
TspDTI ATGAA 5 cut(s) 17, 333, 362, 483, 813
TspRI CASTG 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 2 cut(s) 320, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 728
XspI CTAG 3 cut(s) 54, 404, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.