MD07G1149600.v1.1

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017387
Physical Location & Seq
Reverse (-)
21808925 .. 21809479
555 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1149600.v1.1.491

Sequence Viewer

Length: 555 bp
ATGAATGCCAAACTCATAGTCGAGGTGACCTCAACTGTTTCGCCATCTACAATAGCCTTAGGAGCTGCTGCAAAACAGACAGGAGGAAAACTGGTTTGCATTCTTCCCGAGCCAGTCCTTGATGAATCAAAGAAAGTAATCAGAGACACAGGCCTTAAAGACTCAGTCGAGTTCAAGATCGGTAACCCTTCTGAGCTATTGTCGAATTACGAGAACATTGATTTCTCTCTGGTTGATTGCAAGAATGATGAGTACACAAGGCTGCTGAAGTTGCTAGATGTTAACCCTAGAAAATCAGTGTTTGTGGCTAATAACTTGGTTGGTGAAAGAAAAGGGCTGGAAGGGCATTTGGGAGTGAGGGGAAAGAGGGTTCCGGAGAGGTCTACGAAGAATTCCATAGGAAAAGGAATGGAGGTCACCATGATTGGGAAGAACACTGACGTTGGTAAGGGAAATTGGCGTGGAGGAAGTAAGAGGAGGAGTGGTAAGAGTAAATGGATTGTTAAGGTTGATAAGCAGAGTGGTGAGGAACATATCTTTAGGGTGCCTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

185

Amino Acids

20.1

Weight (kDa)

9.67

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 2 - 181 4e-19 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017387)

Species Orthologous Gene IDs
malus_domestica MD01G1080700.v1.1 MD07G1149600.v1.1 MD07G1149700.v1.1
prunus_persica Prupe.2G188300_v2.0.a1
pyrus_communis pycom07g14830
rosa_chinensis RchiOBHm_Chr1g0359471
rosa_laevigata RLG00000027868
rosa_multiflora Rmu_sc0002556.1_g000003
rosa_roxburghii Rroxscaffold_4G00296980
rosa_samantha Rh1AG284800 Rh1BG250800 Rh1DG279900
rosa_wichuraiana Rw1G025320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 544
AccI GTMKAC 1 cut(s) 383
AccIII TCCGGA 1 cut(s) 373
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 547
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 2 cut(s) 65, 196
AluI AGCT 2 cut(s) 65, 196
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 373
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 65, 68, 262
ApoI RAATTY 1 cut(s) 391
ArsI GACNNNNNNTTYG 1 cut(s) 35
AsuHPI GGTGA 4 cut(s) 37, 335, 409, 536
AvaI CYCGRG 1 cut(s) 107
AxyI CCTNAGG 1 cut(s) 58
BanI GGYRCC 1 cut(s) 544
BbvI GCAGC 3 cut(s) 52, 55, 249
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 549
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 275, 288
BisI GCNGC 3 cut(s) 66, 69, 263
BlsI GCNGC 3 cut(s) 67, 70, 264
Bme1390I CCNGG 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 372, 546
BmrFI CCNGG 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 96, 113
Bse21I CCTNAGG 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 373
BseBI CCWGG 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 177, 183
BseNI ACTGG 2 cut(s) 96, 113
BseRI GAGGAG 2 cut(s) 490, 493
BseXI GCAGC 3 cut(s) 52, 55, 249
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 544
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 138
BsmI GAATGC 2 cut(s) 10, 99
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 373
Bsp143I GATC 1 cut(s) 177
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 176, 184
BspEI TCCGGA 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 372, 546
BspT107I GGYRCC 1 cut(s) 544
BsrI ACTGG 2 cut(s) 96, 113
BssMI GATC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 58, 163, 192
BstEII GGTNACC 3 cut(s) 25, 182, 415
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 62, 271, 343
BstNI CCWGG 1 cut(s) 549
BstPI GGTNACC 3 cut(s) 25, 182, 415
BstSCI CCNGG 1 cut(s) 547
BstV1I GCAGC 3 cut(s) 52, 55, 249
Bsu36I CCTNAGG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 303, 435
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 421
CviJI RGCY 9 cut(s) 56, 65, 112, 153, 196, 262, 308, 337, 552
CviKI_1 RGCY 9 cut(s) 56, 65, 112, 153, 196, 262, 308, 337, 552
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 3 cut(s) 58, 163, 192
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 107
Eco91I GGTNACC 3 cut(s) 25, 182, 415
EcoO65I GGTNACC 3 cut(s) 25, 182, 415
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 547
FaeI CATG 1 cut(s) 424
FaiI YATR 4 cut(s) 17, 398, 422, 534
FatI CATG 1 cut(s) 420
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 3 cut(s) 66, 69, 263
Fsp4HI GCNGC 3 cut(s) 66, 69, 263
FspBI CTAG 2 cut(s) 275, 288
GluI GCNGC 3 cut(s) 66, 69, 263
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 374
Hin1II CATG 1 cut(s) 424
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 125, 161
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 374
HphI GGTGA 4 cut(s) 37, 335, 409, 536
Hpy166II GTNNAC 3 cut(s) 255, 283, 384
Hpy188I TCNGA 2 cut(s) 143, 193
Hpy188III TCNNGA 3 cut(s) 107, 175, 374
Hpy8I GTNNAC 3 cut(s) 255, 283, 384
HpyAV CCTTC 2 cut(s) 198, 335
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 3 cut(s) 71, 99, 240
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 271, 343
HpyF3I CTNAG 3 cut(s) 58, 163, 192
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 1 cut(s) 424
Kpn2I TCCGGA 1 cut(s) 373
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 8 cut(s) 66, 77, 126, 135, 215, 323, 387, 534
Lsp1109I GCAGC 3 cut(s) 52, 55, 249
MaeI CTAG 2 cut(s) 275, 288
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 3 cut(s) 25, 182, 415
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 3 cut(s) 95, 400, 442
MluCI AATT 3 cut(s) 205, 391, 454
MlyI GAGTC 1 cut(s) 155
MroI TCCGGA 1 cut(s) 373
MseI TTAA 3 cut(s) 156, 282, 504
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 549
Mva1269I GAATGC 2 cut(s) 10, 99
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 62, 271, 343
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 2 cut(s) 372, 546
NmuCI GTSAC 2 cut(s) 25, 415
PceI AGGCCT 1 cut(s) 153
PctI GAATGC 2 cut(s) 10, 99
PfeI GAWTC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 3 cut(s) 67, 70, 264
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 547
PspEI GGTNACC 3 cut(s) 25, 182, 415
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 372, 546
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 156, 282, 504
SatI GCNGC 3 cut(s) 66, 69, 263
Sau3AI GATC 1 cut(s) 177
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 549
SetI ASST 8 cut(s) 27, 32, 67, 198, 383, 417, 444, 510
Sse9I AATT 3 cut(s) 205, 391, 454
SseBI AGGCCT 1 cut(s) 153
SspMI CTAG 2 cut(s) 275, 288
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 444
TaqI TCGA 3 cut(s) 21, 168, 203
TasI AATT 3 cut(s) 205, 391, 454
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 156, 282, 504
Tru9I TTAA 3 cut(s) 156, 282, 504
TscAI CASTG 2 cut(s) 303, 442
TseFI GTSAC 2 cut(s) 25, 415
TseI GCWGC 3 cut(s) 65, 68, 262
Tsp45I GTSAC 2 cut(s) 25, 415
TspDTI ATGAA 2 cut(s) 17, 138
TspRI CASTG 2 cut(s) 303, 442
Tth111I GACNNNGTC 1 cut(s) 164
XapI RAATTY 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 2 cut(s) 275, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.