Rmu_sc0002556.1_g000003

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002556.1
OG0017387
Physical Location & Seq
Reverse (-)
12332 .. 12907
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002556.1_g000003.1.cds

Sequence Viewer

Length: 576 bp
atgaaagccaagctcatagtggaggtgacatcaagtgcttccccatcaacaattgccttagcagctgctgcaaaacacaccggaggcaaattggtttgcatccttccggagccagatctagctgaatcgaagaaagttatcaaagactcaggcctaaaagacttggtagaattcaagacaggtgacccttttgagctattgacgaattacgagaacattgatttctctctggttgattgcaagaatgatgagtacacagggttgctgaagttgctggatgttaatccgagaaaatcagtggttgtggctactaacttggttggggaaagaaaaggattcgaaggacatgtgaagggagtgaaggaggagagggttgtcgtgaggcctatgaagcaccccattggaaaaggtatggaggtcaccatgatcggaaaggaagattggggcggaggaagagtttcgaatgaagcagaaaaaagaggtggtttcaagaagaggaatggtaataagagcaaatggcttgtcaaggttgatgagaagagtggtgaggaacatatctttaggattcgtggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

191

Amino Acids

20.99

Weight (kDa)

9.21

Isoelectric Point (pI)

18.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017387)

Species Orthologous Gene IDs
malus_domestica MD01G1080700.v1.1 MD07G1149600.v1.1 MD07G1149700.v1.1
prunus_persica Prupe.2G188300_v2.0.a1
pyrus_communis pycom07g14830
rosa_chinensis RchiOBHm_Chr1g0359471
rosa_laevigata RLG00000027868
rosa_multiflora Rmu_sc0002556.1_g000003
rosa_roxburghii Rroxscaffold_4G00296980
rosa_samantha Rh1AG284800 Rh1BG250800 Rh1DG279900
rosa_wichuraiana Rw1G025320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 1 cut(s) 447
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 2 cut(s) 175, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 4 cut(s) 13, 65, 122, 196
AluI AGCT 4 cut(s) 13, 65, 122, 196
AlwNI CAGNNNCTG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 2 cut(s) 151, 383
ApeKI GCWGC 3 cut(s) 62, 65, 68
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
Asp700I GAANNNNTTC 1 cut(s) 457
AsuHPI GGTGA 4 cut(s) 37, 194, 412, 557
AsuII TTCGAA 2 cut(s) 339, 461
BbvI GCAGC 3 cut(s) 52, 55, 74
BccI CCATC 1 cut(s) 52
BfaI CTAG 1 cut(s) 119
BglII AGATCT 1 cut(s) 115
BisI GCNGC 3 cut(s) 63, 66, 69
BlsI GCNGC 3 cut(s) 64, 67, 70
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 58
Bpu14I TTCGAA 2 cut(s) 339, 461
BsaBI GATNNNNATC 1 cut(s) 282
BsaWI WCCGGW 2 cut(s) 80, 106
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 106
BseGI GGATG 2 cut(s) 99, 283
BseJI GATNNNNATC 1 cut(s) 282
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 3 cut(s) 52, 55, 74
BshFI GGCC 2 cut(s) 153, 385
BsiSI CCGG 2 cut(s) 81, 107
BsnI GGCC 2 cut(s) 153, 385
Bsp119I TTCGAA 2 cut(s) 339, 461
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 115, 426
BspACI CCGC 1 cut(s) 447
BspANI GGCC 2 cut(s) 153, 385
BspCNI CTCAG 1 cut(s) 161
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 111
BspT104I TTCGAA 2 cut(s) 339, 461
BssMI GATC 2 cut(s) 115, 426
Bst6I CTCTTC 3 cut(s) 448, 488, 533
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBI TTCGAA 2 cut(s) 339, 461
BstDEI CTNAG 2 cut(s) 58, 148
BstEII GGTNACC 2 cut(s) 182, 418
BstF5I GGATG 2 cut(s) 99, 283
BstKTI GATC 2 cut(s) 118, 429
BstMBI GATC 2 cut(s) 115, 426
BstMWI GCNNNNNNNGC 4 cut(s) 62, 68, 271, 391
BstNSI RCATGY 1 cut(s) 350
BstPI GGTNACC 2 cut(s) 182, 418
BstV1I GCAGC 3 cut(s) 52, 55, 74
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 2 cut(s) 153, 385
BtsCI GGATG 2 cut(s) 99, 283
BtsIMutI CAGTG 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 68
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 347, 424
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 58, 148
DpnI GATC 2 cut(s) 117, 428
DpnII GATC 2 cut(s) 115, 426
Eam1104I CTCTTC 3 cut(s) 448, 488, 533
EarI CTCTTC 3 cut(s) 448, 488, 533
EciI GGCGGA 1 cut(s) 462
Eco147I AGGCCT 2 cut(s) 153, 385
Eco57I CTGAAG 1 cut(s) 287
Eco91I GGTNACC 2 cut(s) 182, 418
EcoO65I GGTNACC 2 cut(s) 182, 418
EcoRI GAATTC 1 cut(s) 170
FaeI CATG 2 cut(s) 350, 427
FaiI YATR 6 cut(s) 17, 348, 389, 413, 425, 555
FatI CATG 2 cut(s) 346, 423
Fnu4HI GCNGC 3 cut(s) 63, 66, 69
FokI GGATG 2 cut(s) 86, 290
Fsp4HI GCNGC 3 cut(s) 63, 66, 69
FspBI CTAG 1 cut(s) 119
GluI GCNGC 3 cut(s) 63, 66, 69
HaeIII GGCC 2 cut(s) 153, 385
HapII CCGG 2 cut(s) 81, 107
Hin1II CATG 2 cut(s) 350, 427
HinfI GANTC 4 cut(s) 125, 146, 336, 565
HpaII CCGG 2 cut(s) 81, 107
HphI GGTGA 4 cut(s) 37, 194, 412, 557
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 288, 431
Hpy188III TCNNGA 4 cut(s) 107, 175, 379, 490
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 4 cut(s) 113, 335, 346, 355
HpyCH4V TGCA 3 cut(s) 71, 99, 240
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 68, 271, 391
HpyF3I CTNAG 2 cut(s) 58, 148
Hsp92II CATG 2 cut(s) 350, 427
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 115, 426
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 94, 120, 126, 135, 165, 215, 243, 260
Lsp1109I GCAGC 3 cut(s) 52, 55, 74
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 3 cut(s) 25, 182, 418
MalI GATC 2 cut(s) 117, 428
MboI GATC 2 cut(s) 115, 426
MboII GAAGA 5 cut(s) 142, 449, 465, 505, 550
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 1 cut(s) 115
MluCI AATT 4 cut(s) 51, 89, 170, 205
MlyI GAGTC 1 cut(s) 140
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 81, 107
MunI CAATTG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 62, 68, 271, 391
NdeII GATC 2 cut(s) 115, 426
NlaIII CATG 2 cut(s) 350, 427
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 3 cut(s) 25, 182, 418
NspI RCATGY 1 cut(s) 350
NspV TTCGAA 2 cut(s) 339, 461
PceI AGGCCT 2 cut(s) 153, 385
PciI ACATGT 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 125, 336, 565
PkrI GCNGC 3 cut(s) 64, 67, 70
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 346
PspEI GGTNACC 2 cut(s) 182, 418
PspN4I GGNNCC 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 3 cut(s) 63, 66, 69
Sau3AI GATC 2 cut(s) 115, 426
SchI GAGTC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 108
SfuI TTCGAA 2 cut(s) 339, 461
Sse9I AATT 4 cut(s) 51, 89, 170, 205
SseBI AGGCCT 2 cut(s) 153, 385
SsiI CCGC 1 cut(s) 447
SspMI CTAG 1 cut(s) 119
StuI AGGCCT 2 cut(s) 153, 385
TaqI TCGA 3 cut(s) 128, 339, 461
TasI AATT 4 cut(s) 51, 89, 170, 205
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 3 cut(s) 125, 336, 565
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 3 cut(s) 25, 182, 418
TseI GCWGC 3 cut(s) 62, 65, 68
Tsp45I GTSAC 3 cut(s) 25, 182, 418
TspDTI ATGAA 3 cut(s) 17, 404, 480
TspRI CASTG 1 cut(s) 303
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.