Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011690

Physical Location & Seq

Genomic Coordinates Forward (+)

22105451 .. 22108921

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1108100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGTGTCTCTTGTCGTCTAAATCTCTCTTCTCCTTACGCACACTCACAGTCTGCTCTGGTCGGCAACGAAGCTTCAGCCTCGGCACCTTCCAACAGCAACAACTGCCTCCTTTTTCACCCTTCTTCTGCGTTCACTGTTGTTGTTGTTGTGTGTCTGAGAAAACCCTGTTCAGTTTTCTTGAGAGAGAGAGAGAGAGAGGAGAGAGACCGGCCCTTTACAGTTTACATTCACAAAGTCACAGGAGCCACACCAACCCTCTTGGTATTTCAGGGAAATTCCAAATCCTGTTGGACTTTTTGTCTCTCATATCTCAGCTTGTTCTGAAAAACAGGTCAATTATATGCACTCGTCTTATGGATTCTGTGAGAGGACCTTTGAGGAGCAACTCAGAGAAATGGTTGGATTCTCAATTTTGGCATGCCTGTGCCGGCGGCATGGTTCAATTGCCGCCCATTAACACGAAAGTCTTCTACTTTCCTCAGGGCCATGCTGAGTACGCCCATGGGAGAGTAGATTTTGGGAATTCCAGAATTCCACCACTCATTCTCTCCAAGATATCTGCTATTAGATACATGGCAGATCCCGAAACAGATGAGGTTTTTGCGAAAATGAGGCTGATTCCGGTGAGAGAGAGTGGTTTTGATCTTGAGGATGATGGGTTTGTGGGAAACAATGGTACAGTTGAGAATCCCGAGAAACCCACATCTTTTGCAAAGACATTGACCCAATCTGATGCCAACAATGGGGGAGGCTTCTCTGTGCCTCGTTACTGTGCGGAGACTCTCTTCCCGCGCTTGAATTACTCGGCTGAGCCACCAGTTCAGAACATTCTTGCAAAGGATGTGCACGGAGAGATTTGGGATTTTAGGCATATTTATAGAGGTACTCCTCGGCGTCACCTTCTGACAACGGGGTGGAGTAATTTTGTGAACCACAAGAAGCTTGTTGCTGGGGATTCAATTGTCTTTTTCAGAGCGGAAAATGGGGATCTTTGTGTTGGGATTAGAAGGGCTAAGAGGGGAATTGGCGGTGGACCTGAAAACGCATCTGGAAATTCTGGCTCTGAATATGGGGTTTATTCAAGCTCTTCAAGGGAGAATGGCAATAAAGTGATGGAAAAGACTTCTAGTGGTGACGCGAAGGGAAAAATCAGGGCTGAATATGTTATAGAAGCTGCAACTCTTGCTGCCAGTGGCCAGCCCTTTGAGGTTGCGTACTATCCCCGTGCAAGCACACCGGAGTTTTGTGTTAAGGCCTCAGCTGTAAGAGCTGCAATGCGAATACGGTGGTGCTCAGGAATGAGGTTCAAAATGCCCTTTGAAACTGAGGATTCTTCTCGGATAAGCTGGTTCATGGGAACCATATCTTCTGTTCAGGTTGCAGATCCTATCTGTTGGCCCGAGTCTCCATGGCGTCTTCTACAGGTTTCATGGGATGAACCAGATCTGCTCCAAAATGTGAAACGTGTTAGCCCATGGTTGGTTGAATTGGTATCGAGCATACCAGCCATCCATCTCTCCCCCTTCTCGCTTCCAAGAAAGAAGTTGCGGCTTCAACATATCCCAGACTATTCCCTTGTTGGACAACTTCCCATGCCATCAGTTTATAGCAACTCCCTAAATTCGAGCAACCTCTTATGTAATGTATCAGACAACCTATCTGCAGGCATACAGGGAGCCAGGCATGCTCAGTTTGGACTATCTTCATCGGGGCTCTTCTTCAACAAACTGCAATCGGGTTTGTTTTCAATTGGTTTTCAACAACATGGTCACTTTGCGCCTCTTGAAACCACTGGGGGCAACTTCATGCGCAAGGCTGAAAGCAATGATAATATCTCTTGTTGTCTGAAAAAGGGAATTCCCACCCAGAGTTTGAAGGATAATGATGAGATAAAGGCACCTCACATATTATTATTTGGTCAACTAATTTTTACAGGAGAACAGATATCTAAGAGCTCATCCGGTGATGATAGTTCATCAGATGGACATTCAAAGAAAACAACAAATTGTTCTGATGGCTCTGGTTCTATATCACATGGTCATGGTTCAGTGGAAAACTGTTCTGATGGAGGGTCTCCTTGGAAGACAGACTACCATAAAAGTGATCTTAGTTTGGACACTGGTTATTGCAAAGTGTTTATTGATTCAGGGGAAGTGGGGACACTTGATCTTTCTGTCCTTAGATCATACCAAGAACTGTATGGAAAGCTGGCCAATATGTTTGGCAAAGAAAGTTCAAAGAAGTTAAGAAATGTGCTCTACCGAGATGCATCAGGTGTTGTTAAACACACGGGAGACGAGCCATTCTGTGAGTTTTCGAAGACAGCAAAAAGACTTTATATGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035198 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0061980 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

783

Amino Acids

86.53

Weight (kDa)

8.69

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	237 - 338	4e-21	B3 DNA binding domain
BRWD_AD	PF25313	394 - 497	8.4e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	415 - 498	1.9e-33	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30080
fragaria_vesca	FvH4_7g19350 FvH4_7g19350
malus_domestica	MD01G1108100.v1.1 MD07G1174000.v1.1
prunus_persica	Prupe.2G213000_v2.0.a1 Prupe.2G213000_v2.0.a1
pyrus_communis	pycom01g13500 pycom07g16840
rosa_chinensis	RchiOBHm_Chr1g0363241
rosa_laevigata	RLG00000027580
rosa_multiflora	Rmu_sc0004027.1_g000014
rosa_roxburghii	Rroxscaffold_4G00293300
rosa_rugosa	Rorug01G0305700
rosa_samantha	Rh1AG314600 Rh1BG278100 Rh1CG294500 Rh1DG308900
rosa_wichuraiana	Rw1G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1811
AccB1I	GGYRCC	2 cut(s)	83, 1897
AccBSI	CCGCTC	1 cut(s)	977
AccII	CGCG	2 cut(s)	793, 1139
AciI	CCGC	7 cut(s)	432, 449, 776, 791, 977, 1029, 1549
AclWI	GGATC	3 cut(s)	575, 996, 1379
AcoI	YGGCCR	2 cut(s)	1195, 2211
AcsI	RAATTY	6 cut(s)	275, 523, 531, 1054, 1621, 1857
AcuI	CTGAAG	1 cut(s)	58
AcyI	GRCGYC	2 cut(s)	895, 1414
AfaI	GTAC	4 cut(s)	497, 679, 886, 1217
AfiI	CCNNNNNNNGG	2 cut(s)	744, 1480
AflIII	ACRYGT	1 cut(s)	1465
AhdI	GACNNNNNGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	1679
Alw21I	GWGCWC	4 cut(s)	849, 1295, 1958, 2259
Alw26I	GTCTC	7 cut(s)	11, 199, 306, 773, 1410, 2079, 2289
Alw44I	GTGCAC	1 cut(s)	845
AlwI	GGATC	3 cut(s)	575, 996, 1379
Ama87I	CYCGRG	2 cut(s)	692, 1400
AoxI	GGCC	6 cut(s)	210, 484, 1195, 1254, 1397, 2211
ApaLI	GTGCAC	1 cut(s)	845
ApeKI	GCWGC	3 cut(s)	1175, 1187, 1271
ApoI	RAATTY	6 cut(s)	275, 523, 531, 1054, 1621, 1857
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	3 cut(s)	795, 1780, 1812
AspS9I	GGNCC	5 cut(s)	211, 371, 484, 1034, 1398
AsuHPI	GGTGA	5 cut(s)	108, 637, 890, 1145, 1976
AsuII	TTCGAA	1 cut(s)	2318
AvaI	CYCGRG	2 cut(s)	692, 1400
AvaII	GGWCC	2 cut(s)	371, 1034
AxyI	CCTNAGG	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	849
BalI	TGGCCA	2 cut(s)	1197, 2213
BanI	GGYRCC	2 cut(s)	83, 1897
BanII	GRGCYC	2 cut(s)	1716, 1958
BarI	GAAGNNNNNNTAC	2 cut(s)	2075, 2107
BbsI	GAAGAC	4 cut(s)	460, 1409, 2090, 2327
Bbv12I	GWGCWC	4 cut(s)	849, 1295, 1958, 2259
BbvCI	CCTCAGC	1 cut(s)	1258
BbvI	GCAGC	3 cut(s)	1162, 1174, 1258
BccI	CCATC	8 cut(s)	650, 1108, 1517, 1521, 1606, 1976, 2009, 2060
BciT130I	CCWGG	1 cut(s)	1681
BcoDI	GTCTC	7 cut(s)	11, 199, 306, 773, 1410, 2079, 2289
BfaI	CTAG	1 cut(s)	1128
BfmI	CTRYAG	2 cut(s)	1421, 1662
BglII	AGATCT	1 cut(s)	1444
BisI	GCNGC	6 cut(s)	433, 449, 1176, 1188, 1272, 1550
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	6 cut(s)	434, 450, 1177, 1189, 1273, 1551
Bme1390I	CCNGG	1 cut(s)	1681
Bme18I	GGWCC	2 cut(s)	371, 1034
BmeRI	GACNNNNNGTC	1 cut(s)	298
BmeT110I	CYCGRG	2 cut(s)	692, 1400
BmgT120I	GGNCC	5 cut(s)	211, 371, 484, 1034, 1398
BmiI	GGNNCC	5 cut(s)	85, 245, 1360, 1678, 1899
BmrFI	CCNGG	1 cut(s)	1681
BmrI	ACTGGG	1 cut(s)	1803
BmsI	GCATC	4 cut(s)	724, 1055, 2257, 2279
BmuI	ACTGGG	1 cut(s)	1803
BpiI	GAAGAC	4 cut(s)	460, 1409, 2090, 2327
Bpu10I	CCTNAGC	2 cut(s)	1258, 1294
Bpu1102I	GCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	2318
BpuEI	CTTGAG	2 cut(s)	200, 668
BsaHI	GRCGYC	2 cut(s)	895, 1414
BsaI	GGTCTC	2 cut(s)	199, 2079
BsaJI	CCNNGG	6 cut(s)	79, 502, 890, 1409, 1475, 2078
BsaWI	WCCGGW	3 cut(s)	622, 1237, 1961
Bsc4I	CCNNNNNNNGG	2 cut(s)	744, 1480
Bse118I	RCCGGY	2 cut(s)	208, 428
Bse1I	ACTGG	4 cut(s)	818, 1191, 1798, 2125
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	1281, 1831
BseBI	CCWGG	1 cut(s)	1681
BseDI	CCNNGG	6 cut(s)	79, 502, 890, 1409, 1475, 2078
BseGI	GGATG	5 cut(s)	658, 847, 1441, 1509, 1958
BseLI	CCNNNNNNNGG	2 cut(s)	744, 1480
BseMI	GCAATG	2 cut(s)	1281, 1831
BseNI	ACTGG	4 cut(s)	818, 1191, 1798, 2125
BseRI	GAGGAG	3 cut(s)	213, 394, 879
BseSI	GKGCMC	1 cut(s)	849
BseXI	GCAGC	3 cut(s)	1162, 1174, 1258
BseYI	CCCAGC	1 cut(s)	950
Bsh1236I	CGCG	2 cut(s)	793, 1139
BshFI	GGCC	6 cut(s)	212, 486, 1197, 1256, 1399, 2213
BshNI	GGYRCC	2 cut(s)	83, 1897
BsiHKAI	GWGCWC	4 cut(s)	849, 1295, 1958, 2259
BsiHKCI	CYCGRG	2 cut(s)	692, 1400
BsiSI	CCGG	5 cut(s)	209, 429, 623, 1238, 1962
BslFI	GGGAC	1 cut(s)	2173
BslI	CCNNNNNNNGG	2 cut(s)	744, 1480
BsmAI	GTCTC	7 cut(s)	11, 199, 306, 773, 1410, 2079, 2289
BsmBI	CGTCTC	1 cut(s)	2289
BsmFI	GGGAC	1 cut(s)	2173
BsnI	GGCC	6 cut(s)	212, 486, 1197, 1256, 1399, 2213
Bso31I	GGTCTC	2 cut(s)	199, 2079
BsoBI	CYCGRG	2 cut(s)	692, 1400
Bsp119I	TTCGAA	1 cut(s)	2318
Bsp1286I	GDGCHC	5 cut(s)	849, 1295, 1716, 1958, 2259
Bsp143I	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
Bsp1720I	GCTNAGC	1 cut(s)	810
Bsp19I	CCATGG	3 cut(s)	502, 1409, 1475
BspACI	CCGC	7 cut(s)	432, 449, 776, 791, 977, 1029, 1549
BspANI	GGCC	6 cut(s)	212, 486, 1197, 1256, 1399, 2213
BspFNI	CGCG	2 cut(s)	793, 1139
BspLI	GGNNCC	5 cut(s)	85, 245, 1360, 1678, 1899
BspMAI	CTGCAG	1 cut(s)	1666
BspPI	GGATC	3 cut(s)	575, 996, 1379
BspQI	GCTCTTC	2 cut(s)	1093, 1721
BspT104I	TTCGAA	1 cut(s)	2318
BspT107I	GGYRCC	2 cut(s)	83, 1897
BspTNI	GGTCTC	2 cut(s)	199, 2079
BsrBI	CCGCTC	1 cut(s)	977
BsrDI	GCAATG	2 cut(s)	1281, 1831
BsrFI	RCCGGY	2 cut(s)	208, 428
BsrI	ACTGG	4 cut(s)	818, 1191, 1798, 2125
BssAI	RCCGGY	2 cut(s)	208, 428
BssECI	CCNNGG	6 cut(s)	79, 502, 890, 1409, 1475, 2078
BssMI	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
BssNI	GRCGYC	2 cut(s)	895, 1414
BssT1I	CCWWGG	4 cut(s)	502, 1409, 1475, 2078
Bst2UI	CCWGG	1 cut(s)	1681
Bst4CI	ACNGT	8 cut(s)	49, 137, 221, 682, 773, 1287, 2060, 2199
Bst6I	CTCTTC	4 cut(s)	32, 791, 1093, 1721
BstACI	GRCGYC	2 cut(s)	895, 1414
BstAPI	GCANNNNNTGC	2 cut(s)	103, 1184
BstBI	TTCGAA	1 cut(s)	2318
BstC8I	GCNNGC	7 cut(s)	420, 430, 1199, 1231, 1666, 1686, 2211
BstDSI	CCRYGG	3 cut(s)	502, 1409, 1475
BstF5I	GGATG	5 cut(s)	658, 847, 1441, 1509, 1958
BstFNI	CGCG	2 cut(s)	793, 1139
BstHHI	GCGC	3 cut(s)	795, 1780, 1812
BstKTI	GATC	8 cut(s)	583, 646, 991, 1387, 1447, 2107, 2170, 2186
BstMAI	GTCTC	7 cut(s)	11, 199, 306, 773, 1410, 2079, 2289
BstMBI	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 497, 1184, 1268, 1685
BstNI	CCWGG	1 cut(s)	1681
BstNSI	RCATGY	2 cut(s)	422, 1688
BstSCI	CCNGG	1 cut(s)	1679
BstSFI	CTRYAG	2 cut(s)	1421, 1662
BstSLI	GKGCMC	1 cut(s)	849
BstUI	CGCG	2 cut(s)	793, 1139
BstV1I	GCAGC	3 cut(s)	1162, 1174, 1258
BstV2I	GAAGAC	4 cut(s)	460, 1409, 2090, 2327
BstX2I	RGATCY	4 cut(s)	580, 988, 1384, 1444
BstYI	RGATCY	4 cut(s)	580, 988, 1384, 1444
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	6 cut(s)	212, 486, 1197, 1256, 1399, 2213
BtgI	CCRYGG	3 cut(s)	502, 1409, 1475
BtsCI	GGATG	5 cut(s)	658, 847, 1441, 1509, 1958
BtsIMutI	CAGTG	5 cut(s)	133, 1198, 1791, 2055, 2118
Cac8I	GCNNGC	7 cut(s)	420, 430, 1199, 1231, 1666, 1686, 2211
CfoI	GCGC	3 cut(s)	795, 1780, 1812
Cfr10I	RCCGGY	2 cut(s)	208, 428
Cfr13I	GGNCC	5 cut(s)	211, 371, 484, 1034, 1398
CseI	GACGC	3 cut(s)	884, 1145, 1403
Csp6I	GTAC	4 cut(s)	496, 678, 885, 1216
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviQI	GTAC	4 cut(s)	496, 678, 885, 1216
DpnI	GATC	8 cut(s)	582, 645, 990, 1386, 1446, 2106, 2169, 2185
DpnII	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
DriI	GACNNNNNGTC	1 cut(s)	298
EaeI	YGGCCR	2 cut(s)	1195, 2211
Eam1104I	CTCTTC	4 cut(s)	32, 791, 1093, 1721
Eam1105I	GACNNNNNGTC	1 cut(s)	298
EarI	CTCTTC	4 cut(s)	32, 791, 1093, 1721
Ecl136II	GAGCTC	1 cut(s)	1956
Eco130I	CCWWGG	4 cut(s)	502, 1409, 1475, 2078
Eco147I	AGGCCT	1 cut(s)	1256
Eco24I	GRGCYC	2 cut(s)	1716, 1958
Eco31I	GGTCTC	2 cut(s)	199, 2079
Eco32I	GATATC	2 cut(s)	558, 1947
Eco47I	GGWCC	2 cut(s)	371, 1034
Eco53kI	GAGCTC	1 cut(s)	1956
Eco57I	CTGAAG	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	2 cut(s)	692, 1400
EcoICRI	GAGCTC	1 cut(s)	1956
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRI	GAATTC	3 cut(s)	523, 531, 1857
EcoRII	CCWGG	1 cut(s)	1679
EcoRV	GATATC	2 cut(s)	558, 1947
EcoT14I	CCWWGG	4 cut(s)	502, 1409, 1475, 2078
EcoT22I	ATGCAT	1 cut(s)	2272
EcoT38I	GRGCYC	2 cut(s)	1716, 1958
ErhI	CCWWGG	4 cut(s)	502, 1409, 1475, 2078
Esp3I	CGTCTC	1 cut(s)	2289
FaqI	GGGAC	1 cut(s)	2173
FauI	CCCGC	1 cut(s)	798
Fnu4HI	GCNGC	6 cut(s)	433, 449, 1176, 1188, 1272, 1550
FokI	GGATG	5 cut(s)	665, 854, 1448, 1496, 1945
FriOI	GRGCYC	2 cut(s)	1716, 1958
Fsp4HI	GCNGC	6 cut(s)	433, 449, 1176, 1188, 1272, 1550
FspBI	CTAG	1 cut(s)	1128
FspI	TGCGCA	1 cut(s)	1811
GlaI	GCGC	3 cut(s)	794, 1779, 1811
GluI	GCNGC	6 cut(s)	433, 449, 1176, 1188, 1272, 1550
GsaI	CCCAGC	1 cut(s)	954
HaeIII	GGCC	6 cut(s)	212, 486, 1197, 1256, 1399, 2213
HapII	CCGG	5 cut(s)	209, 429, 623, 1238, 1962
HgaI	GACGC	3 cut(s)	884, 1145, 1403
HhaI	GCGC	3 cut(s)	795, 1780, 1812
Hin1I	GRCGYC	2 cut(s)	895, 1414
Hin6I	GCGC	3 cut(s)	793, 1778, 1810
HinP1I	GCGC	3 cut(s)	793, 1778, 1810
HincII	GTYRAC	1 cut(s)	1922
HindII	GTYRAC	1 cut(s)	1922
HindIII	AAGCTT	2 cut(s)	70, 941
HinfI	GANTC	9 cut(s)	359, 404, 619, 688, 781, 956, 1331, 1403, 2144
HpaII	CCGG	5 cut(s)	209, 429, 623, 1238, 1962
HphI	GGTGA	5 cut(s)	108, 637, 890, 1145, 1976
Hpy166II	GTNNAC	6 cut(s)	133, 224, 847, 931, 1034, 1922
Hpy188III	TCNNGA	8 cut(s)	179, 528, 584, 647, 692, 1050, 1296, 1784
Hpy8I	GTNNAC	6 cut(s)	133, 224, 847, 931, 1034, 1922
HpyAV	CCTTC	7 cut(s)	97, 130, 911, 1002, 1135, 1534, 1870
HpyCH4III	ACNGT	8 cut(s)	49, 137, 221, 682, 773, 1287, 2060, 2199
HpyCH4IV	ACGT	1 cut(s)	1465
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 497, 1184, 1268, 1685
HpySE526I	ACGT	1 cut(s)	1465
Hsp92I	GRCGYC	2 cut(s)	895, 1414
HspAI	GCGC	3 cut(s)	793, 1778, 1810
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Kzo9I	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
LguI	GCTCTTC	2 cut(s)	1093, 1721
LmnI	GCTCC	4 cut(s)	243, 381, 1455, 1676
Lsp1109I	GCAGC	3 cut(s)	1162, 1174, 1258
LweI	GCATC	4 cut(s)	724, 1055, 2257, 2279
MaeI	CTAG	1 cut(s)	1128
MaeII	ACGT	1 cut(s)	1465
MaeIII	GTNAC	5 cut(s)	236, 767, 896, 1133, 1769
MalI	GATC	8 cut(s)	582, 645, 990, 1386, 1446, 2106, 2169, 2185
MbiI	CCGCTC	1 cut(s)	977
MboI	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
MfeI	CAATTG	3 cut(s)	443, 960, 1749
MflI	RGATCY	4 cut(s)	580, 988, 1384, 1444
MhlI	GDGCHC	5 cut(s)	849, 1295, 1716, 1958, 2259
MlsI	TGGCCA	2 cut(s)	1197, 2213
MluNI	TGGCCA	2 cut(s)	1197, 2213
MlyI	GAGTC	2 cut(s)	775, 1412
MmeI	TCCRAC	4 cut(s)	115, 270, 381, 1561
Mox20I	TGGCCA	2 cut(s)	1197, 2213
Mph1103I	ATGCAT	1 cut(s)	2272
MroNI	GCCGGC	1 cut(s)	428
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	2 cut(s)	1197, 2213
MseI	TTAA	4 cut(s)	456, 1251, 2246, 2283
MslI	CAYNNNNRTG	3 cut(s)	423, 2040, 2100
Msp20I	TGGCCA	2 cut(s)	1197, 2213
MspA1I	CMGCKG	1 cut(s)	1262
MspI	CCGG	5 cut(s)	209, 429, 623, 1238, 1962
MspR9I	CCNGG	1 cut(s)	1681
MunI	CAATTG	3 cut(s)	443, 960, 1749
MvaI	CCWGG	1 cut(s)	1681
MvnI	CGCG	2 cut(s)	793, 1139
MwoI	GCNNNNNNNGC	5 cut(s)	103, 497, 1184, 1268, 1685
NaeI	GCCGGC	1 cut(s)	430
NcoI	CCATGG	3 cut(s)	502, 1409, 1475
NdeII	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
NgoMIV	GCCGGC	1 cut(s)	428
NlaIV	GGNNCC	5 cut(s)	85, 245, 1360, 1678, 1899
NmeAIII	GCCGAG	3 cut(s)	60, 785, 871
NmuCI	GTSAC	4 cut(s)	236, 896, 1133, 1769
NsbI	TGCGCA	1 cut(s)	1811
NsiI	ATGCAT	1 cut(s)	2272
NspI	RCATGY	2 cut(s)	422, 1688
NspV	TTCGAA	1 cut(s)	2318
PaeI	GCATGC	2 cut(s)	422, 1688
PceI	AGGCCT	1 cut(s)	1256
PciSI	GCTCTTC	2 cut(s)	1093, 1721
PdiI	GCCGGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	7 cut(s)	359, 404, 619, 688, 956, 1331, 2144
PkrI	GCNGC	6 cut(s)	434, 450, 1177, 1189, 1273, 1551
PleI	GAGTC	2 cut(s)	775, 1411
PpsI	GAGTC	2 cut(s)	775, 1411
PpuMI	RGGWCCY	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	1958
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	1679
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	1 cut(s)	1679
PspN4I	GGNNCC	5 cut(s)	85, 245, 1360, 1678, 1899
PspPI	GGNCC	5 cut(s)	211, 371, 484, 1034, 1398
PspPPI	RGGWCCY	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	1666
PsuI	RGATCY	4 cut(s)	580, 988, 1384, 1444
PvuII	CAGCTG	1 cut(s)	1262
RsaI	GTAC	4 cut(s)	497, 679, 886, 1217
RsaNI	GTAC	4 cut(s)	496, 678, 885, 1216
RseI	CAYNNNNRTG	3 cut(s)	423, 2040, 2100
SacI	GAGCTC	1 cut(s)	1958
SapI	GCTCTTC	2 cut(s)	1093, 1721
SaqAI	TTAA	4 cut(s)	456, 1251, 2246, 2283
SatI	GCNGC	6 cut(s)	433, 449, 1176, 1188, 1272, 1550
Sau3AI	GATC	8 cut(s)	580, 643, 988, 1384, 1444, 2104, 2167, 2183
Sau96I	GGNCC	5 cut(s)	211, 371, 484, 1034, 1398
SchI	GAGTC	2 cut(s)	775, 1412
ScrFI	CCNGG	1 cut(s)	1681
SduI	GDGCHC	5 cut(s)	849, 1295, 1716, 1958, 2259
SfaNI	GCATC	4 cut(s)	724, 1055, 2257, 2279
SfcI	CTRYAG	2 cut(s)	1421, 1662
SfuI	TTCGAA	1 cut(s)	2318
SinI	GGWCC	2 cut(s)	371, 1034
SmiMI	CAYNNNNRTG	3 cut(s)	423, 2040, 2100
SmlI	CTYRAG	2 cut(s)	179, 647
SmoI	CTYRAG	2 cut(s)	179, 647
SphI	GCATGC	2 cut(s)	422, 1688
SseBI	AGGCCT	1 cut(s)	1256
SsiI	CCGC	7 cut(s)	432, 449, 776, 791, 977, 1029, 1549
SspMI	CTAG	1 cut(s)	1128
SstI	GAGCTC	1 cut(s)	1958
StuI	AGGCCT	1 cut(s)	1256
StyD4I	CCNGG	1 cut(s)	1679
StyI	CCWWGG	4 cut(s)	502, 1409, 1475, 2078
TaaI	ACNGT	8 cut(s)	49, 137, 221, 682, 773, 1287, 2060, 2199
TaiI	ACGT	1 cut(s)	1468
TaqI	TCGA	3 cut(s)	1496, 1625, 2318
TauI	GCSGC	3 cut(s)	435, 451, 1552
TfiI	GAWTC	7 cut(s)	359, 404, 619, 688, 956, 1331, 2144
Tru1I	TTAA	4 cut(s)	456, 1251, 2246, 2283
Tru9I	TTAA	4 cut(s)	456, 1251, 2246, 2283
TscAI	CASTG	5 cut(s)	140, 1198, 1798, 2055, 2125
TseFI	GTSAC	4 cut(s)	236, 896, 1133, 1769
TseI	GCWGC	3 cut(s)	1175, 1187, 1271
Tsp45I	GTSAC	4 cut(s)	236, 896, 1133, 1769
TspDTI	ATGAA	6 cut(s)	1342, 1419, 1452, 1695, 1795, 1965
TspGWI	ACGGA	1 cut(s)	864
TspRI	CASTG	5 cut(s)	140, 1198, 1798, 2055, 2125
VneI	GTGCAC	1 cut(s)	845
VpaK11BI	GGWCC	2 cut(s)	371, 1034
XapI	RAATTY	6 cut(s)	275, 523, 531, 1054, 1621, 1857
XceI	RCATGY	2 cut(s)	422, 1688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2198
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	1 cut(s)	1128
Zsp2I	ATGCAT	1 cut(s)	2272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.