Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011690

Physical Location & Seq

Genomic Coordinates Forward (+)

54732202 .. 54735729

Gene Structure 3528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGATTACTATAATGAATTCTGTGAGGGAGCCAATGAAGAACAACAGCAACAACTCAGAGAAAGGTTTGGATTCTCAGTTCTGGCATGCCTGTGCTGGTGGCATGGTTCAAATGCCACCTATTAACTCTAAGGTCTTCTACTTCCCTCAAGGGCATGCAGAGTATGCCCAAGGGGATGTGGATTTCGGGAATTCTCGAATTCCAGCACTCATTCTTTCTAGGATATCTGCTATTAGGTACATGGCAGATCCTGAAACCGATGAGGTTTATGCAAAAATGAGGCTGGTTCCGGTGAGAGAGAGTGATTTTGATTTTGAGGATGATGGGGTTGTGGGGAATAACAATGGAGTAGTTGAGAATCCTGAGAAACCCACATCTTTTGCTAAGACTTTGACTCAATCTGATGCTAACAATGGGGGAGGGTTCTCTGTGCCTCGCTTCTGCGCGGAGACTATCTTTCCGCGCTTGGATTACTCGGCTGAGCCTCCGGTTCAGACCATTCTTGCAAAGGATGTGCATGGTGAGATTTGGAAGTTTAGGCATATCTATAGAGGTACTCCTCGCCGTCACCTTTTGACAACGGGATGGAGTAATTTTGTGAACAATAAAAAGCTTGTTGCTGGGGATTCGATTGTTTTTTTCCGAGCAGAAAATGGGGATCTTTGTGTGGGGATTAGGAGGGCTAAAAGGGGGATTGGTGGTGGACCTGAGTACCCTTGTGGATGGAACACTCCATCCGGAAATTCTTGCTCTCAGTATGGTGGTTATTCTGGCTTTTCAAGGGAGAATGGAAACAAGTCAATGGAGAAAAATTCTAGTGGGACTATGAGAGGAAGAGTCAGGGCTGAACATGTCATAGAAGCTGCAACTCTTGCTGTCAGTGGCCAGCCCTTTGAGGTTGTGTACTATCCACGTGCAAGCACACCAGAGTTTTGTGTCAAGGCCTCATCTGTGAGAGCTGCAATGCAAATTCGCTGGTGCTCGGGAATAAGGTTCAAAATGCCTTTTGAAACTGAGGATTCTTCTCGGATAAGCTGGTTCATGGGAACCATATCTTCTGTTCATCATGCAGATCCCCGTTGGCCTGATTCTCCATGGCGCATATTACAGGTTGCATGGGATGAGCCAGATCTGCTCCAAAATGTGAGATGTGTTAGTCCATGGTTGGTCGAATTGGTATCAAGCATACCAGCTATCGATCTCTCTCCCTACTCGCCTCCAAGAAAGAAGTTGCGGCTTCAACAGTATCCAGATTATTCTCTTATTGGCCAGCTGCCAATGCCGTCTGTTTATGGCAACTTCCTAAATTCCAGCAACACTTTATGTCATCTATCAGACAACATTCCTGCAGGCATACAGGGAGCCAGGCAAGCTCATTTTGGACTATCTTCATCGAATCTTTTCAACAAACGGCACTCAGGTTTAATTCCAGTTGGCTTTCAACAACTTGGTCATGTTGTCCCTCCTGGAATCCCTGGAGGTAACTTCATGCGCATTGCTGAAACCAATGAGGACAGCCCTTGCTGCGTTACTGAGGGTATTCCTTACCACAATTTAAAGGATAATGACGAGATAAAGACACCTCACATATTCTTGTTTGGACAGCTAATTGTTTCGGGGCAGCAGATGTCAAAGAGCTCCTCTGGTGATGATAGTTCATCAGATCCAGAGAAAACAGGAAATTCTTCTGATGGCTCTGGTTCTGCATTACATCGCAACGGTTCAGTGGAAAATTGCTCTGATGGAGGGTCTCCCTGGGACAAAGACCACCAGAAAAGTGACCACAACTTGGAGACTGGTCTTTGCAAAGTGTATGTTGAATCTGGAGATGCGGGGACCCTTGATCTCTCAGTCTTTAGATCATACCAAGAATTGTACCGAAAGCTGGCCAACATGTTTGGCAAAGAAAGTTCAGAGATGCTGAGTAATGTACTGTACCGGGATGCAACAGGTGCTGTTAGACACACTGGAGATGAACCCTTCAGTGAGTTTTTGAAGACAGCAAGAGGACTTTATATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035198 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0061980 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

674

Amino Acids

74.44

Weight (kDa)

6.24

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	127 - 228	2.5e-22	B3 DNA binding domain
BRWD_AD	PF25313	289 - 391	1.3e-10	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	311 - 393	1.4e-31	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30080
fragaria_vesca	FvH4_7g19350 FvH4_7g19350
malus_domestica	MD01G1108100.v1.1 MD07G1174000.v1.1
prunus_persica	Prupe.2G213000_v2.0.a1 Prupe.2G213000_v2.0.a1
pyrus_communis	pycom01g13500 pycom07g16840
rosa_chinensis	RchiOBHm_Chr1g0363241
rosa_laevigata	RLG00000027580
rosa_multiflora	Rmu_sc0004027.1_g000014
rosa_roxburghii	Rroxscaffold_4G00293300
rosa_rugosa	Rorug01G0305700
rosa_samantha	Rh1AG314600 Rh1BG278100 Rh1CG294500 Rh1DG308900
rosa_wichuraiana	Rw1G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1493
AccB7I	CCANNNNNTGG	1 cut(s)	1789
AccII	CGCG	2 cut(s)	446, 463
AccIII	TCCGGA	1 cut(s)	737
AciI	CCGC	4 cut(s)	446, 461, 1234, 1832
AclWI	GGATC	4 cut(s)	242, 666, 1067, 1658
AcoI	YGGCCR	3 cut(s)	883, 1267, 1887
AcsI	RAATTY	8 cut(s)	16, 190, 198, 742, 811, 969, 1306, 1681
AcuI	CTGAAG	1 cut(s)	1966
AcvI	CACGTG	1 cut(s)	914
AfaI	GTAC	7 cut(s)	239, 556, 713, 905, 1877, 1932, 1937
AfiI	CCNNNNNNNGG	2 cut(s)	1789, 1885
AflIII	ACRYGT	2 cut(s)	850, 1893
AgsI	TTSAA	9 cut(s)	110, 780, 997, 1010, 1241, 1405, 1442, 1820, 1996
AjnI	CCWGG	4 cut(s)	1364, 1465, 1474, 1754
AloI	GAACNNNNNNTCC	4 cut(s)	62, 94, 719, 751
Alw21I	GWGCWC	2 cut(s)	983, 1640
Alw26I	GTCTC	3 cut(s)	443, 1755, 1787
AlwI	GGATC	4 cut(s)	242, 666, 1067, 1658
AlwNI	CAGNNNCTG	2 cut(s)	251, 1955
Ama87I	CYCGRG	1 cut(s)	982
Aor13HI	TCCGGA	1 cut(s)	737
AoxI	GGCC	5 cut(s)	883, 942, 1082, 1267, 1887
ApeKI	GCWGC	5 cut(s)	863, 959, 1273, 1524, 1621
ApoI	RAATTY	8 cut(s)	16, 190, 198, 742, 811, 969, 1306, 1681
Asp700I	GAANNNNTTC	2 cut(s)	1400, 1684
AspLEI	GCGC	4 cut(s)	446, 465, 1101, 1494
AspS9I	GGNCC	2 cut(s)	704, 1836
AsuC2I	CCSGG	1 cut(s)	1940
AsuHPI	GGTGA	4 cut(s)	304, 533, 560, 1658
AvaI	CYCGRG	1 cut(s)	982
AvaII	GGWCC	2 cut(s)	704, 1836
BaeI	ACNNNNGTAYC	2 cut(s)	695, 728
BalI	TGGCCA	3 cut(s)	885, 1269, 1889
BanII	GRGCYC	1 cut(s)	1640
BbrPI	CACGTG	1 cut(s)	914
BbsI	GAAGAC	2 cut(s)	127, 2003
Bbv12I	GWGCWC	2 cut(s)	983, 1640
BbvI	GCAGC	5 cut(s)	850, 946, 1260, 1511, 1633
BccI	CCATC	6 cut(s)	317, 579, 717, 742, 1685, 1736
BceAI	ACGGC	3 cut(s)	549, 1267, 1427
BciT130I	CCWGG	4 cut(s)	1366, 1467, 1476, 1756
BciVI	GTATCC	1 cut(s)	1257
BcnI	CCSGG	1 cut(s)	1940
BcoDI	GTCTC	3 cut(s)	443, 1755, 1787
BfaI	CTAG	2 cut(s)	219, 816
BfmI	CTRYAG	2 cut(s)	547, 1347
BfuI	GTATCC	1 cut(s)	1257
BglII	AGATCT	1 cut(s)	1129
BisI	GCNGC	6 cut(s)	864, 960, 1235, 1274, 1525, 1622
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	6 cut(s)	865, 961, 1236, 1275, 1526, 1623
Bme1390I	CCNGG	5 cut(s)	1366, 1467, 1476, 1756, 1940
Bme18I	GGWCC	2 cut(s)	704, 1836
BmeT110I	CYCGRG	1 cut(s)	982
BmgT120I	GGNCC	2 cut(s)	704, 1836
BmiI	GGNNCC	6 cut(s)	30, 288, 1048, 1363, 1837, 1838
BmrFI	CCNGG	5 cut(s)	1366, 1467, 1476, 1756, 1940
BmsI	GCATC	4 cut(s)	394, 1819, 1908, 1933
BpiI	GAAGAC	2 cut(s)	127, 2003
BpmI	CTGGAG	3 cut(s)	1497, 1845, 1989
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	1940
Bsa29I	ATCGAT	1 cut(s)	1197
BsaAI	YACGTR	1 cut(s)	914
BsaI	GGTCTC	1 cut(s)	1755
BsaJI	CCNNGG	6 cut(s)	169, 1094, 1160, 1474, 1754, 1755
BsaWI	WCCGGW	3 cut(s)	289, 487, 737
Bsc4I	CCNNNNNNNGG	2 cut(s)	1789, 1885
Bse1I	ACTGG	3 cut(s)	1430, 1801, 1972
Bse3DI	GCAATG	2 cut(s)	969, 1494
BseAI	TCCGGA	1 cut(s)	737
BseBI	CCWGG	4 cut(s)	1366, 1467, 1476, 1756
BseCI	ATCGAT	1 cut(s)	1197
BseDI	CCNNGG	6 cut(s)	169, 1094, 1160, 1474, 1754, 1755
BseGI	GGATG	8 cut(s)	181, 325, 517, 590, 728, 734, 1126, 1948
BseLI	CCNNNNNNNGG	2 cut(s)	1789, 1885
BseMI	GCAATG	2 cut(s)	969, 1494
BseNI	ACTGG	3 cut(s)	1430, 1801, 1972
BseRI	GAGGAG	2 cut(s)	549, 1630
BseXI	GCAGC	5 cut(s)	850, 946, 1260, 1511, 1633
BseYI	CCCAGC	1 cut(s)	620
Bsh1236I	CGCG	2 cut(s)	446, 463
BshFI	GGCC	5 cut(s)	885, 944, 1084, 1269, 1889
BshVI	ATCGAT	1 cut(s)	1197
BsiHKAI	GWGCWC	2 cut(s)	983, 1640
BsiHKCI	CYCGRG	1 cut(s)	982
BsiSI	CCGG	4 cut(s)	290, 488, 738, 1939
BslFI	GGGAC	4 cut(s)	835, 1445, 1772, 1849
BslI	CCNNNNNNNGG	2 cut(s)	1789, 1885
BsmAI	GTCTC	3 cut(s)	443, 1755, 1787
BsmFI	GGGAC	4 cut(s)	835, 1445, 1772, 1849
BsnI	GGCC	5 cut(s)	885, 944, 1084, 1269, 1889
Bso31I	GGTCTC	1 cut(s)	1755
BsoBI	CYCGRG	1 cut(s)	982
Bsp1286I	GDGCHC	2 cut(s)	983, 1640
Bsp13I	TCCGGA	1 cut(s)	737
Bsp143I	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
Bsp1720I	GCTNAGC	1 cut(s)	480
Bsp19I	CCATGG	2 cut(s)	1094, 1160
BspACI	CCGC	4 cut(s)	446, 461, 1234, 1832
BspANI	GGCC	5 cut(s)	885, 944, 1084, 1269, 1889
BspDI	ATCGAT	1 cut(s)	1197
BspEI	TCCGGA	1 cut(s)	737
BspFNI	CGCG	2 cut(s)	446, 463
BspLI	GGNNCC	6 cut(s)	30, 288, 1048, 1363, 1837, 1838
BspMAI	CTGCAG	1 cut(s)	1351
BspPI	GGATC	4 cut(s)	242, 666, 1067, 1658
BspTNI	GGTCTC	1 cut(s)	1755
BsrDI	GCAATG	2 cut(s)	969, 1494
BsrI	ACTGG	3 cut(s)	1430, 1801, 1972
BssECI	CCNNGG	6 cut(s)	169, 1094, 1160, 1474, 1754, 1755
BssMI	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
BssT1I	CCWWGG	3 cut(s)	169, 1094, 1160
Bst2UI	CCWGG	4 cut(s)	1366, 1467, 1476, 1756
Bst4CI	ACNGT	3 cut(s)	1245, 1721, 1935
Bst6I	CTCTTC	1 cut(s)	829
BstAPI	GCANNNNNTGC	3 cut(s)	164, 872, 1952
BstBAI	YACGTR	1 cut(s)	914
BstC8I	GCNNGC	8 cut(s)	87, 156, 887, 919, 1271, 1351, 1371, 1887
BstDSI	CCRYGG	2 cut(s)	1094, 1160
BstF5I	GGATG	8 cut(s)	181, 325, 517, 590, 728, 734, 1126, 1948
BstFNI	CGCG	2 cut(s)	446, 463
BstHHI	GCGC	4 cut(s)	446, 465, 1101, 1494
BstKTI	GATC	8 cut(s)	250, 661, 1075, 1132, 1201, 1666, 1846, 1862
BstMAI	GTCTC	3 cut(s)	443, 1755, 1787
BstMBI	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 872, 1132, 1279, 1370, 1524, 1952
BstNI	CCWGG	4 cut(s)	1366, 1467, 1476, 1756
BstNSI	RCATGY	4 cut(s)	89, 158, 854, 1897
BstSCI	CCNGG	5 cut(s)	1364, 1465, 1474, 1754, 1938
BstSFI	CTRYAG	2 cut(s)	547, 1347
BstUI	CGCG	2 cut(s)	446, 463
BstV1I	GCAGC	5 cut(s)	850, 946, 1260, 1511, 1633
BstV2I	GAAGAC	2 cut(s)	127, 2003
BstX2I	RGATCY	5 cut(s)	247, 658, 1072, 1129, 1663
BstYI	RGATCY	5 cut(s)	247, 658, 1072, 1129, 1663
Bsu15I	ATCGAT	1 cut(s)	1197
BsuI	GTATCC	1 cut(s)	1257
BsuRI	GGCC	5 cut(s)	885, 944, 1084, 1269, 1889
BsuTUI	ATCGAT	1 cut(s)	1197
BtgI	CCRYGG	2 cut(s)	1094, 1160
BtgZI	GCGATG	1 cut(s)	1697
BtsCI	GGATG	8 cut(s)	181, 325, 517, 590, 728, 734, 1126, 1948
BtsIMutI	CAGTG	4 cut(s)	886, 1731, 1965, 1990
Cac8I	GCNNGC	8 cut(s)	87, 156, 887, 919, 1271, 1351, 1371, 1887
CaiI	CAGNNNCTG	2 cut(s)	251, 1955
CfoI	GCGC	4 cut(s)	446, 465, 1101, 1494
Cfr13I	GGNCC	2 cut(s)	704, 1836
ClaI	ATCGAT	1 cut(s)	1197
Csp6I	GTAC	7 cut(s)	238, 555, 712, 904, 1876, 1931, 1936
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviQI	GTAC	7 cut(s)	238, 555, 712, 904, 1876, 1931, 1936
DpnI	GATC	8 cut(s)	249, 660, 1074, 1131, 1200, 1665, 1845, 1861
DpnII	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
DraI	TTTAAA	1 cut(s)	1557
EaeI	YGGCCR	3 cut(s)	883, 1267, 1887
Eam1104I	CTCTTC	1 cut(s)	829
EarI	CTCTTC	1 cut(s)	829
Ecl136II	GAGCTC	1 cut(s)	1638
Eco130I	CCWWGG	3 cut(s)	169, 1094, 1160
Eco147I	AGGCCT	1 cut(s)	944
Eco24I	GRGCYC	1 cut(s)	1640
Eco31I	GGTCTC	1 cut(s)	1755
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	704, 1836
Eco53kI	GAGCTC	1 cut(s)	1638
Eco57I	CTGAAG	1 cut(s)	1966
Eco72I	CACGTG	1 cut(s)	914
Eco88I	CYCGRG	1 cut(s)	982
EcoICRI	GAGCTC	1 cut(s)	1638
EcoO109I	RGGNCCY	1 cut(s)	1836
EcoRI	GAATTC	3 cut(s)	16, 190, 198
EcoRII	CCWGG	4 cut(s)	1364, 1465, 1474, 1754
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	3 cut(s)	169, 1094, 1160
EcoT38I	GRGCYC	1 cut(s)	1640
ErhI	CCWWGG	3 cut(s)	169, 1094, 1160
FaqI	GGGAC	4 cut(s)	835, 1445, 1772, 1849
FauI	CCCGC	1 cut(s)	1825
Fnu4HI	GCNGC	6 cut(s)	864, 960, 1235, 1274, 1525, 1622
FokI	GGATG	8 cut(s)	188, 332, 524, 597, 721, 735, 1133, 1955
FriOI	GRGCYC	1 cut(s)	1640
Fsp4HI	GCNGC	6 cut(s)	864, 960, 1235, 1274, 1525, 1622
FspAI	RTGCGCAY	1 cut(s)	1493
FspBI	CTAG	2 cut(s)	219, 816
FspI	TGCGCA	1 cut(s)	1493
GlaI	GCGC	4 cut(s)	445, 464, 1100, 1493
GluI	GCNGC	6 cut(s)	864, 960, 1235, 1274, 1525, 1622
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	3 cut(s)	1497, 1845, 1989
HaeIII	GGCC	5 cut(s)	885, 944, 1084, 1269, 1889
HapII	CCGG	4 cut(s)	290, 488, 738, 1939
HhaI	GCGC	4 cut(s)	446, 465, 1101, 1494
Hin6I	GCGC	4 cut(s)	444, 463, 1099, 1492
HinP1I	GCGC	4 cut(s)	444, 463, 1099, 1492
HindIII	AAGCTT	1 cut(s)	611
HpaII	CCGG	4 cut(s)	290, 488, 738, 1939
HphI	GGTGA	4 cut(s)	304, 533, 560, 1658
Hpy166II	GTNNAC	3 cut(s)	601, 704, 904
Hpy188III	TCNNGA	9 cut(s)	187, 195, 251, 362, 738, 984, 1250, 1667, 1824
Hpy8I	GTNNAC	3 cut(s)	601, 704, 904
HpyAV	CCTTC	1 cut(s)	1990
HpyCH4III	ACNGT	3 cut(s)	1245, 1721, 1935
HpyCH4IV	ACGT	1 cut(s)	913
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 872, 1132, 1279, 1370, 1524, 1952
HpySE526I	ACGT	1 cut(s)	913
HspAI	GCGC	4 cut(s)	444, 463, 1099, 1492
KflI	GGGWCCC	1 cut(s)	1836
Kpn2I	TCCGGA	1 cut(s)	737
Kzo9I	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
LmnI	GCTCC	4 cut(s)	28, 1140, 1361, 1643
Lsp1109I	GCAGC	5 cut(s)	850, 946, 1260, 1511, 1633
LweI	GCATC	4 cut(s)	394, 1819, 1908, 1933
MaeI	CTAG	2 cut(s)	219, 816
MaeII	ACGT	1 cut(s)	913
MaeIII	GTNAC	4 cut(s)	566, 1481, 1528, 1778
MalI	GATC	8 cut(s)	249, 660, 1074, 1131, 1200, 1665, 1845, 1861
MboI	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
MboII	GAAGA	8 cut(s)	49, 127, 846, 1014, 1047, 1380, 1677, 2008
MflI	RGATCY	5 cut(s)	247, 658, 1072, 1129, 1663
MhlI	GDGCHC	2 cut(s)	983, 1640
MlsI	TGGCCA	3 cut(s)	885, 1269, 1889
MluNI	TGGCCA	3 cut(s)	885, 1269, 1889
MlyI	GAGTC	2 cut(s)	388, 846
Mox20I	TGGCCA	3 cut(s)	885, 1269, 1889
MroI	TCCGGA	1 cut(s)	737
MroXI	GAANNNNTTC	2 cut(s)	1400, 1684
MscI	TGGCCA	3 cut(s)	885, 1269, 1889
MseI	TTAA	3 cut(s)	123, 1424, 1556
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	3 cut(s)	885, 1269, 1889
MspA1I	CMGCKG	1 cut(s)	1273
MspI	CCGG	4 cut(s)	290, 488, 738, 1939
MspR9I	CCNGG	5 cut(s)	1366, 1467, 1476, 1756, 1940
MvaI	CCWGG	4 cut(s)	1366, 1467, 1476, 1756
MvnI	CGCG	2 cut(s)	446, 463
MwoI	GCNNNNNNNGC	7 cut(s)	164, 872, 1132, 1279, 1370, 1524, 1952
NciI	CCSGG	1 cut(s)	1940
NcoI	CCATGG	2 cut(s)	1094, 1160
NdeII	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
NlaIV	GGNNCC	6 cut(s)	30, 288, 1048, 1363, 1837, 1838
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	2 cut(s)	566, 1778
NsbI	TGCGCA	1 cut(s)	1493
NspI	RCATGY	4 cut(s)	89, 158, 854, 1897
PaeI	GCATGC	2 cut(s)	89, 158
PasI	CCCWGGG	1 cut(s)	1755
PceI	AGGCCT	1 cut(s)	944
PciI	ACATGT	2 cut(s)	850, 1893
PdmI	GAANNNNTTC	2 cut(s)	1400, 1684
PfeI	GAWTC	8 cut(s)	71, 358, 626, 1019, 1088, 1396, 1470, 1820
PflMI	CCANNNNNTGG	1 cut(s)	1789
PfoI	TCCNGGA	1 cut(s)	1465
PkrI	GCNGC	6 cut(s)	865, 961, 1236, 1275, 1526, 1623
PleI	GAGTC	2 cut(s)	388, 845
PmaCI	CACGTG	1 cut(s)	914
PmlI	CACGTG	1 cut(s)	914
PpsI	GAGTC	2 cut(s)	388, 845
Ppu21I	YACGTR	1 cut(s)	914
PpuMI	RGGWCCY	1 cut(s)	1836
PscI	ACATGT	2 cut(s)	850, 1893
Psp124BI	GAGCTC	1 cut(s)	1640
Psp5II	RGGWCCY	1 cut(s)	1836
Psp6I	CCWGG	4 cut(s)	1364, 1465, 1474, 1754
PspCI	CACGTG	1 cut(s)	914
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	4 cut(s)	1364, 1465, 1474, 1754
PspN4I	GGNNCC	6 cut(s)	30, 288, 1048, 1363, 1837, 1838
PspPI	GGNCC	2 cut(s)	704, 1836
PspPPI	RGGWCCY	1 cut(s)	1836
PstI	CTGCAG	1 cut(s)	1351
PstNI	CAGNNNCTG	2 cut(s)	251, 1955
PsuI	RGATCY	5 cut(s)	247, 658, 1072, 1129, 1663
PvuII	CAGCTG	1 cut(s)	1273
RsaI	GTAC	7 cut(s)	239, 556, 713, 905, 1877, 1932, 1937
RsaNI	GTAC	7 cut(s)	238, 555, 712, 904, 1876, 1931, 1936
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	1640
SaqAI	TTAA	3 cut(s)	123, 1424, 1556
SatI	GCNGC	6 cut(s)	864, 960, 1235, 1274, 1525, 1622
Sau3AI	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
Sau96I	GGNCC	2 cut(s)	704, 1836
SbfI	CCTGCAGG	1 cut(s)	1351
SchI	GAGTC	2 cut(s)	388, 846
ScrFI	CCNGG	5 cut(s)	1366, 1467, 1476, 1756, 1940
SdaI	CCTGCAGG	1 cut(s)	1351
SduI	GDGCHC	2 cut(s)	983, 1640
SfaNI	GCATC	4 cut(s)	394, 1819, 1908, 1933
SfcI	CTRYAG	2 cut(s)	547, 1347
SinI	GGWCC	2 cut(s)	704, 1836
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SphI	GCATGC	2 cut(s)	89, 158
Sse8387I	CCTGCAGG	1 cut(s)	1351
SseBI	AGGCCT	1 cut(s)	944
SsiI	CCGC	4 cut(s)	446, 461, 1234, 1832
SspMI	CTAG	2 cut(s)	219, 816
SstI	GAGCTC	1 cut(s)	1640
StuI	AGGCCT	1 cut(s)	944
StyD4I	CCNGG	5 cut(s)	1364, 1465, 1474, 1754, 1938
StyI	CCWWGG	3 cut(s)	169, 1094, 1160
TaaI	ACNGT	3 cut(s)	1245, 1721, 1935
TaiI	ACGT	1 cut(s)	916
TaqI	TCGA	5 cut(s)	196, 629, 1170, 1197, 1394
TatI	WGTACW	2 cut(s)	903, 1930
TauI	GCSGC	1 cut(s)	1237
TfiI	GAWTC	8 cut(s)	71, 358, 626, 1019, 1088, 1396, 1470, 1820
Tru1I	TTAA	3 cut(s)	123, 1424, 1556
Tru9I	TTAA	3 cut(s)	123, 1424, 1556
TscAI	CASTG	4 cut(s)	886, 1731, 1972, 1990
TseFI	GTSAC	2 cut(s)	566, 1778
TseI	GCWGC	5 cut(s)	863, 959, 1273, 1524, 1621
Tsp45I	GTSAC	2 cut(s)	566, 1778
TspDTI	ATGAA	8 cut(s)	29, 50, 1030, 1052, 1380, 1477, 1647, 1989
TspRI	CASTG	4 cut(s)	886, 1731, 1972, 1990
Van91I	CCANNNNNTGG	1 cut(s)	1789
VpaK11BI	GGWCC	2 cut(s)	704, 1836
XapI	RAATTY	8 cut(s)	16, 190, 198, 742, 811, 969, 1306, 1681
XceI	RCATGY	4 cut(s)	89, 158, 854, 1897
XmnI	GAANNNNTTC	2 cut(s)	1400, 1684
XspI	CTAG	2 cut(s)	219, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.