Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011690

Physical Location & Seq

Genomic Coordinates Forward (+)

53589638 .. 53592021

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG308900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGATTACTATAATGAATTCTGTGAGGGAGCCAATGAAGAACAACAACAACTCAGAGAAAGGTTTGGATTCTCAGTTCTGGCATGCCTGTGCTGGTGGCATGGTTCAAATGCCACCTATTAACTCTAAGGTCTTCTACTTCCCTCAAGGGCATGCAGAGTATGCCCAAGGGGATGTGGATTTCGGGAATTCTCGAATTCCAGCAGTCATTCTTTCTAGGATATCTGCTATTAGGTACATGGCAGATCCTGAAACCGATGAGGTTTATGCGAAAATGAGGCTGGTTCCAGTGAGAGAGAGTGGTTTTGATTTTGAGGATGATGGGGTTGTGGGGAATAACAATGGAGTAGTTGAGAATCCTGAGAAACCCACATCTTTTGCTAAGACTTTGACTCAATCTGATGCTAACAATGGGGGAGGGTTCTCTGTGCCTCGCTTCTGCGCGGAGACTATCTTTCCGCGCTTGGATTACTCGGCTGAGCCTCCGGTTCAGACCATTCTTGCAAAGGATGTGCATGGTGAGATTTGGAAGTTTAGGCATATCTATAGAGGTACTCCTCGTCGTCACCTTTTGACAACAGGATGGAGTAATTTTGTGAACAATAAAAAGCTTGTTGCTGGGGATTCGATTGTGTTTTTCCGAGCAGAAAATGGGGATCTTTGTGTGGGGATTAGGAGGGCTAAAAGGGGGATTGGTGGTGGACCTGAGTACCCTTGTGGATGGAACACTCCATCCGGAAATTCTTGCTCTCAGTATGGTGGTTATTCTGGCTTTTCAAGGGAGAATGGAAACAAGTCAATGGAGAAAAATTCTAGTGGGACTACGAGAGGAAGAGTCAGGGCTGAACATGTTATAGAAGCTGCAACTCTTGCTGTCAGTGGCCAGCCCTTTGAGGTTGTGTACTATCCACGTGCAAGCACACCGGAGTTTTGTGTTAAGGCCTCATCTGTGAGAGCTGCAATGCAAATTCGCTGGTGCTCGGGAATAAGGTTCAAAATGCCTTTTGAAACTGAGGATTCTTCTCGGATAAGCTGGTTCATGGGAACCGTATCTTCTGTTCATCATGCAGATCCCCGTTGGCCTGATTCTCCATGGCGCATATTACAGGTTGCATGGGATGAGCCTGATCTGCTCCAAAATGTGAGATGTGTTAGCCCATGGTTGGTCGAATTGGTATCAAGCATACCAGCTATCGATCTCTCTCCCTACTCGCCTCCAAGAAAGAAGTTGCGGCTTCAACAGAACCCAGATTATTCTCTTATTGACCAACTGCCAATGCCGTCTGTTTACGGCAACTTCCTAAATTCCAGCAACACTTTATATCATTTATCAAACAACATTCCTGCAGGCATACAGGGAGCCAGGCAAGCTCATTTTGGACTATCTTCATCGAATCTTTTCAACAAACGGCACTCAGGTCTAATTCCAGTTGGCTTTCAGCAACTTGGTCATGTTGTCCCTCCTGGAATCCCTGGAGGTAACTTCATGCGCATTGCTGAAACCAATGAGGACAGCCCTTGCTGCATTACCGAGGGTATTCCTTACCACAATTTAAAGGATAATGACGAGATAAAGACACCTCACATATTCTTGTTCGGACAGCTAATTGTTTCGGGGCAGCAGATGTCAAAGAGTTCCTCTGGTGATGATAGTTCATCAGATCCAGAGAAAACAGGAAATTCTTCTGATGGCTCTGGTTCTGCATTACATCGCAACGGTTCAGTGGAAAATTGCTCTGATGGAGGGTCTCCCTGGGACAAAGACCACCAGAAAAGTGACCACAACTTGGAGACTGGTCTTTGCAAAGTGTATGTTGAATCTGGAGATGCGGGGACCCTTGATCTCTCAGTCTTTAGATCATACCAAGAATTGTACCGAAAGCTGGCCAACATGTTTGGCAAAGAAAATTCAGAGATGCTGAGTAATGTACTGTACCGGGATGCAACAGGTGCTGTTAGACACACTGGAGATGAACCCTTCAGTGAGTTTTTGAAGACAGCAAGAGGACTTTATATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035198 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0061980 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

673

Amino Acids

74.35

Weight (kDa)

6.33

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	126 - 227	2.5e-22	B3 DNA binding domain
BRWD_AD	PF25313	288 - 390	1.7e-10	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	310 - 392	2.2e-31	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30080
fragaria_vesca	FvH4_7g19350 FvH4_7g19350
malus_domestica	MD01G1108100.v1.1 MD07G1174000.v1.1
prunus_persica	Prupe.2G213000_v2.0.a1 Prupe.2G213000_v2.0.a1
pyrus_communis	pycom01g13500 pycom07g16840
rosa_chinensis	RchiOBHm_Chr1g0363241
rosa_laevigata	RLG00000027580
rosa_multiflora	Rmu_sc0004027.1_g000014
rosa_roxburghii	Rroxscaffold_4G00293300
rosa_rugosa	Rorug01G0305700
rosa_samantha	Rh1AG314600 Rh1BG278100 Rh1CG294500 Rh1DG308900
rosa_wichuraiana	Rw1G027880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1490
AccB7I	CCANNNNNTGG	1 cut(s)	1786
AccII	CGCG	2 cut(s)	443, 460
AccIII	TCCGGA	1 cut(s)	734
AciI	CCGC	4 cut(s)	443, 458, 1231, 1829
AclWI	GGATC	4 cut(s)	239, 663, 1064, 1655
AcoI	YGGCCR	2 cut(s)	880, 1884
AcsI	RAATTY	9 cut(s)	16, 187, 195, 739, 808, 966, 1303, 1678, 1906
AcuI	CTGAAG	1 cut(s)	1963
AcvI	CACGTG	1 cut(s)	911
AfaI	GTAC	7 cut(s)	236, 553, 710, 902, 1874, 1929, 1934
AfiI	CCNNNNNNNGG	3 cut(s)	1162, 1786, 1882
AflIII	ACRYGT	2 cut(s)	847, 1890
AgsI	TTSAA	8 cut(s)	107, 777, 994, 1007, 1238, 1402, 1817, 1993
AjnI	CCWGG	4 cut(s)	1361, 1462, 1471, 1751
AloI	GAACNNNNNNTCC	4 cut(s)	59, 91, 716, 748
AluBI	AGCT	8 cut(s)	610, 860, 956, 1032, 1190, 1370, 1603, 1882
AluI	AGCT	8 cut(s)	610, 860, 956, 1032, 1190, 1370, 1603, 1882
Alw21I	GWGCWC	1 cut(s)	980
Alw26I	GTCTC	3 cut(s)	440, 1752, 1784
AlwI	GGATC	4 cut(s)	239, 663, 1064, 1655
AlwNI	CAGNNNCTG	2 cut(s)	248, 1952
Ama87I	CYCGRG	1 cut(s)	979
Aor13HI	TCCGGA	1 cut(s)	734
AoxI	GGCC	4 cut(s)	880, 939, 1079, 1884
ApeKI	GCWGC	4 cut(s)	860, 956, 1521, 1618
ApoI	RAATTY	9 cut(s)	16, 187, 195, 739, 808, 966, 1303, 1678, 1906
Asp700I	GAANNNNTTC	2 cut(s)	1397, 1681
AspLEI	GCGC	4 cut(s)	443, 462, 1098, 1491
AspS9I	GGNCC	2 cut(s)	701, 1833
AsuC2I	CCSGG	1 cut(s)	1937
AsuHPI	GGTGA	3 cut(s)	530, 557, 1655
AvaI	CYCGRG	1 cut(s)	979
AvaII	GGWCC	2 cut(s)	701, 1833
BaeI	ACNNNNGTAYC	2 cut(s)	692, 725
BalI	TGGCCA	2 cut(s)	882, 1886
BbrPI	CACGTG	1 cut(s)	911
BbsI	GAAGAC	2 cut(s)	124, 2000
Bbv12I	GWGCWC	1 cut(s)	980
BbvI	GCAGC	4 cut(s)	847, 943, 1508, 1630
BccI	CCATC	6 cut(s)	314, 576, 714, 739, 1682, 1733
BceAI	ACGGC	3 cut(s)	1264, 1306, 1424
BciT130I	CCWGG	4 cut(s)	1363, 1464, 1473, 1753
BcnI	CCSGG	1 cut(s)	1937
BcoDI	GTCTC	3 cut(s)	440, 1752, 1784
BfaI	CTAG	2 cut(s)	216, 813
BfmI	CTRYAG	2 cut(s)	544, 1344
BisI	GCNGC	5 cut(s)	861, 957, 1232, 1522, 1619
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	5 cut(s)	862, 958, 1233, 1523, 1620
Bme1390I	CCNGG	5 cut(s)	1363, 1464, 1473, 1753, 1937
Bme18I	GGWCC	2 cut(s)	701, 1833
BmeT110I	CYCGRG	1 cut(s)	979
BmgT120I	GGNCC	2 cut(s)	701, 1833
BmiI	GGNNCC	6 cut(s)	30, 285, 1045, 1360, 1834, 1835
BmrFI	CCNGG	5 cut(s)	1363, 1464, 1473, 1753, 1937
BmsI	GCATC	4 cut(s)	391, 1816, 1905, 1930
BpiI	GAAGAC	2 cut(s)	124, 2000
BpmI	CTGGAG	3 cut(s)	1494, 1842, 1986
Bpu1102I	GCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	1937
Bsa29I	ATCGAT	1 cut(s)	1194
BsaAI	YACGTR	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	1752
BsaJI	CCNNGG	7 cut(s)	166, 1091, 1157, 1471, 1530, 1751, 1752
BsaWI	WCCGGW	3 cut(s)	484, 734, 922
Bsc4I	CCNNNNNNNGG	3 cut(s)	1162, 1786, 1882
Bse1I	ACTGG	4 cut(s)	287, 1427, 1798, 1969
Bse3DI	GCAATG	2 cut(s)	966, 1491
BseAI	TCCGGA	1 cut(s)	734
BseBI	CCWGG	4 cut(s)	1363, 1464, 1473, 1753
BseCI	ATCGAT	1 cut(s)	1194
BseDI	CCNNGG	7 cut(s)	166, 1091, 1157, 1471, 1530, 1751, 1752
BseGI	GGATG	8 cut(s)	178, 322, 514, 587, 725, 731, 1123, 1945
BseLI	CCNNNNNNNGG	3 cut(s)	1162, 1786, 1882
BseMI	GCAATG	2 cut(s)	966, 1491
BseNI	ACTGG	4 cut(s)	287, 1427, 1798, 1969
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	4 cut(s)	847, 943, 1508, 1630
BseYI	CCCAGC	1 cut(s)	617
Bsh1236I	CGCG	2 cut(s)	443, 460
BshFI	GGCC	4 cut(s)	882, 941, 1081, 1886
BshVI	ATCGAT	1 cut(s)	1194
BsiHKAI	GWGCWC	1 cut(s)	980
BsiHKCI	CYCGRG	1 cut(s)	979
BsiSI	CCGG	4 cut(s)	485, 735, 923, 1936
BslFI	GGGAC	4 cut(s)	832, 1442, 1769, 1846
BslI	CCNNNNNNNGG	3 cut(s)	1162, 1786, 1882
BsmAI	GTCTC	3 cut(s)	440, 1752, 1784
BsmFI	GGGAC	4 cut(s)	832, 1442, 1769, 1846
BsnI	GGCC	4 cut(s)	882, 941, 1081, 1886
Bso31I	GGTCTC	1 cut(s)	1752
BsoBI	CYCGRG	1 cut(s)	979
Bsp1286I	GDGCHC	1 cut(s)	980
Bsp13I	TCCGGA	1 cut(s)	734
Bsp143I	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
Bsp1720I	GCTNAGC	1 cut(s)	477
Bsp19I	CCATGG	2 cut(s)	1091, 1157
BspACI	CCGC	4 cut(s)	443, 458, 1231, 1829
BspANI	GGCC	4 cut(s)	882, 941, 1081, 1886
BspDI	ATCGAT	1 cut(s)	1194
BspEI	TCCGGA	1 cut(s)	734
BspFNI	CGCG	2 cut(s)	443, 460
BspLI	GGNNCC	6 cut(s)	30, 285, 1045, 1360, 1834, 1835
BspMAI	CTGCAG	1 cut(s)	1348
BspPI	GGATC	4 cut(s)	239, 663, 1064, 1655
BspTNI	GGTCTC	1 cut(s)	1752
BsrDI	GCAATG	2 cut(s)	966, 1491
BsrI	ACTGG	4 cut(s)	287, 1427, 1798, 1969
BssECI	CCNNGG	7 cut(s)	166, 1091, 1157, 1471, 1530, 1751, 1752
BssMI	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
BssT1I	CCWWGG	3 cut(s)	166, 1091, 1157
Bst2UI	CCWGG	4 cut(s)	1363, 1464, 1473, 1753
Bst4CI	ACNGT	3 cut(s)	1048, 1718, 1932
Bst6I	CTCTTC	1 cut(s)	826
BstAPI	GCANNNNNTGC	3 cut(s)	161, 869, 1949
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	7 cut(s)	84, 153, 884, 916, 1348, 1368, 1884
BstDSI	CCRYGG	2 cut(s)	1091, 1157
BstF5I	GGATG	8 cut(s)	178, 322, 514, 587, 725, 731, 1123, 1945
BstFNI	CGCG	2 cut(s)	443, 460
BstHHI	GCGC	4 cut(s)	443, 462, 1098, 1491
BstKTI	GATC	8 cut(s)	247, 658, 1072, 1129, 1198, 1663, 1843, 1859
BstMAI	GTCTC	3 cut(s)	440, 1752, 1784
BstMBI	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 869, 1129, 1367, 1521, 1949
BstNI	CCWGG	4 cut(s)	1363, 1464, 1473, 1753
BstNSI	RCATGY	4 cut(s)	86, 155, 851, 1894
BstSCI	CCNGG	5 cut(s)	1361, 1462, 1471, 1751, 1935
BstSFI	CTRYAG	2 cut(s)	544, 1344
BstUI	CGCG	2 cut(s)	443, 460
BstV1I	GCAGC	4 cut(s)	847, 943, 1508, 1630
BstV2I	GAAGAC	2 cut(s)	124, 2000
BstX2I	RGATCY	4 cut(s)	244, 655, 1069, 1660
BstYI	RGATCY	4 cut(s)	244, 655, 1069, 1660
Bsu15I	ATCGAT	1 cut(s)	1194
BsuRI	GGCC	4 cut(s)	882, 941, 1081, 1886
BsuTUI	ATCGAT	1 cut(s)	1194
BtgI	CCRYGG	2 cut(s)	1091, 1157
BtgZI	GCGATG	1 cut(s)	1694
BtsCI	GGATG	8 cut(s)	178, 322, 514, 587, 725, 731, 1123, 1945
BtsIMutI	CAGTG	5 cut(s)	294, 883, 1728, 1962, 1987
Cac8I	GCNNGC	7 cut(s)	84, 153, 884, 916, 1348, 1368, 1884
CaiI	CAGNNNCTG	2 cut(s)	248, 1952
CfoI	GCGC	4 cut(s)	443, 462, 1098, 1491
Cfr13I	GGNCC	2 cut(s)	701, 1833
ClaI	ATCGAT	1 cut(s)	1194
Csp6I	GTAC	7 cut(s)	235, 552, 709, 901, 1873, 1928, 1933
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviQI	GTAC	7 cut(s)	235, 552, 709, 901, 1873, 1928, 1933
DpnI	GATC	8 cut(s)	246, 657, 1071, 1128, 1197, 1662, 1842, 1858
DpnII	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
DraI	TTTAAA	1 cut(s)	1554
EaeI	YGGCCR	2 cut(s)	880, 1884
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Eco130I	CCWWGG	3 cut(s)	166, 1091, 1157
Eco147I	AGGCCT	1 cut(s)	941
Eco31I	GGTCTC	1 cut(s)	1752
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	701, 1833
Eco57I	CTGAAG	1 cut(s)	1963
Eco72I	CACGTG	1 cut(s)	911
Eco88I	CYCGRG	1 cut(s)	979
EcoO109I	RGGNCCY	1 cut(s)	1833
EcoRI	GAATTC	3 cut(s)	16, 187, 195
EcoRII	CCWGG	4 cut(s)	1361, 1462, 1471, 1751
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	3 cut(s)	166, 1091, 1157
ErhI	CCWWGG	3 cut(s)	166, 1091, 1157
FaqI	GGGAC	4 cut(s)	832, 1442, 1769, 1846
FauI	CCCGC	1 cut(s)	1822
Fnu4HI	GCNGC	5 cut(s)	861, 957, 1232, 1522, 1619
FokI	GGATG	8 cut(s)	185, 329, 521, 594, 718, 732, 1130, 1952
Fsp4HI	GCNGC	5 cut(s)	861, 957, 1232, 1522, 1619
FspAI	RTGCGCAY	1 cut(s)	1490
FspBI	CTAG	2 cut(s)	216, 813
FspI	TGCGCA	1 cut(s)	1490
GlaI	GCGC	4 cut(s)	442, 461, 1097, 1490
GluI	GCNGC	5 cut(s)	861, 957, 1232, 1522, 1619
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	3 cut(s)	1494, 1842, 1986
HaeIII	GGCC	4 cut(s)	882, 941, 1081, 1886
HapII	CCGG	4 cut(s)	485, 735, 923, 1936
HhaI	GCGC	4 cut(s)	443, 462, 1098, 1491
Hin6I	GCGC	4 cut(s)	441, 460, 1096, 1489
HinP1I	GCGC	4 cut(s)	441, 460, 1096, 1489
HindIII	AAGCTT	1 cut(s)	608
HpaII	CCGG	4 cut(s)	485, 735, 923, 1936
HphI	GGTGA	3 cut(s)	530, 557, 1655
Hpy166II	GTNNAC	4 cut(s)	598, 701, 901, 1288
Hpy188III	TCNNGA	8 cut(s)	184, 192, 248, 359, 735, 981, 1664, 1821
Hpy8I	GTNNAC	4 cut(s)	598, 701, 901, 1288
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	1 cut(s)	1987
HpyCH4III	ACNGT	3 cut(s)	1048, 1718, 1932
HpyCH4IV	ACGT	1 cut(s)	910
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 869, 1129, 1367, 1521, 1949
HpySE526I	ACGT	1 cut(s)	910
HspAI	GCGC	4 cut(s)	441, 460, 1096, 1489
KflI	GGGWCCC	1 cut(s)	1833
Kpn2I	TCCGGA	1 cut(s)	734
Kzo9I	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
LmnI	GCTCC	3 cut(s)	28, 1137, 1358
Lsp1109I	GCAGC	4 cut(s)	847, 943, 1508, 1630
LweI	GCATC	4 cut(s)	391, 1816, 1905, 1930
MaeI	CTAG	2 cut(s)	216, 813
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	3 cut(s)	563, 1478, 1775
MalI	GATC	8 cut(s)	246, 657, 1071, 1128, 1197, 1662, 1842, 1858
MboI	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
MboII	GAAGA	8 cut(s)	49, 124, 843, 1011, 1044, 1377, 1674, 2005
MflI	RGATCY	4 cut(s)	244, 655, 1069, 1660
MhlI	GDGCHC	1 cut(s)	980
MlsI	TGGCCA	2 cut(s)	882, 1886
MluNI	TGGCCA	2 cut(s)	882, 1886
MlyI	GAGTC	2 cut(s)	385, 843
Mox20I	TGGCCA	2 cut(s)	882, 1886
MroI	TCCGGA	1 cut(s)	734
MroXI	GAANNNNTTC	2 cut(s)	1397, 1681
MscI	TGGCCA	2 cut(s)	882, 1886
MseI	TTAA	3 cut(s)	120, 936, 1553
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	2 cut(s)	882, 1886
MspI	CCGG	4 cut(s)	485, 735, 923, 1936
MspR9I	CCNGG	5 cut(s)	1363, 1464, 1473, 1753, 1937
MvaI	CCWGG	4 cut(s)	1363, 1464, 1473, 1753
MvnI	CGCG	2 cut(s)	443, 460
MwoI	GCNNNNNNNGC	6 cut(s)	161, 869, 1129, 1367, 1521, 1949
NciI	CCSGG	1 cut(s)	1937
NcoI	CCATGG	2 cut(s)	1091, 1157
NdeII	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
NlaIV	GGNNCC	6 cut(s)	30, 285, 1045, 1360, 1834, 1835
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	563, 1775
NsbI	TGCGCA	1 cut(s)	1490
NspI	RCATGY	4 cut(s)	86, 155, 851, 1894
PaeI	GCATGC	2 cut(s)	86, 155
PasI	CCCWGGG	1 cut(s)	1752
PceI	AGGCCT	1 cut(s)	941
PciI	ACATGT	2 cut(s)	847, 1890
PdmI	GAANNNNTTC	2 cut(s)	1397, 1681
PfeI	GAWTC	8 cut(s)	68, 355, 623, 1016, 1085, 1393, 1467, 1817
PflMI	CCANNNNNTGG	1 cut(s)	1786
PfoI	TCCNGGA	1 cut(s)	1462
PkrI	GCNGC	5 cut(s)	862, 958, 1233, 1523, 1620
PleI	GAGTC	2 cut(s)	385, 842
PmaCI	CACGTG	1 cut(s)	911
PmlI	CACGTG	1 cut(s)	911
PpsI	GAGTC	2 cut(s)	385, 842
Ppu21I	YACGTR	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	1833
PscI	ACATGT	2 cut(s)	847, 1890
Psp5II	RGGWCCY	1 cut(s)	1833
Psp6I	CCWGG	4 cut(s)	1361, 1462, 1471, 1751
PspCI	CACGTG	1 cut(s)	911
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	4 cut(s)	1361, 1462, 1471, 1751
PspN4I	GGNNCC	6 cut(s)	30, 285, 1045, 1360, 1834, 1835
PspPI	GGNCC	2 cut(s)	701, 1833
PspPPI	RGGWCCY	1 cut(s)	1833
PsrI	GAACNNNNNNTAC	2 cut(s)	1041, 1073
PstI	CTGCAG	1 cut(s)	1348
PstNI	CAGNNNCTG	2 cut(s)	248, 1952
PsuI	RGATCY	4 cut(s)	244, 655, 1069, 1660
RsaI	GTAC	7 cut(s)	236, 553, 710, 902, 1874, 1929, 1934
RsaNI	GTAC	7 cut(s)	235, 552, 709, 901, 1873, 1928, 1933
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	120, 936, 1553
SatI	GCNGC	5 cut(s)	861, 957, 1232, 1522, 1619
Sau3AI	GATC	8 cut(s)	244, 655, 1069, 1126, 1195, 1660, 1840, 1856
Sau96I	GGNCC	2 cut(s)	701, 1833
SbfI	CCTGCAGG	1 cut(s)	1348
SchI	GAGTC	2 cut(s)	385, 843
ScrFI	CCNGG	5 cut(s)	1363, 1464, 1473, 1753, 1937
SdaI	CCTGCAGG	1 cut(s)	1348
SduI	GDGCHC	1 cut(s)	980
SfaNI	GCATC	4 cut(s)	391, 1816, 1905, 1930
SfcI	CTRYAG	2 cut(s)	544, 1344
SinI	GGWCC	2 cut(s)	701, 1833
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SphI	GCATGC	2 cut(s)	86, 155
Sse8387I	CCTGCAGG	1 cut(s)	1348
SseBI	AGGCCT	1 cut(s)	941
SsiI	CCGC	4 cut(s)	443, 458, 1231, 1829
SspMI	CTAG	2 cut(s)	216, 813
StuI	AGGCCT	1 cut(s)	941
StyD4I	CCNGG	5 cut(s)	1361, 1462, 1471, 1751, 1935
StyI	CCWWGG	3 cut(s)	166, 1091, 1157
TaaI	ACNGT	3 cut(s)	1048, 1718, 1932
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	5 cut(s)	193, 626, 1167, 1194, 1391
TatI	WGTACW	2 cut(s)	900, 1927
TauI	GCSGC	1 cut(s)	1234
TfiI	GAWTC	8 cut(s)	68, 355, 623, 1016, 1085, 1393, 1467, 1817
Tru1I	TTAA	3 cut(s)	120, 936, 1553
Tru9I	TTAA	3 cut(s)	120, 936, 1553
TscAI	CASTG	5 cut(s)	294, 883, 1728, 1969, 1987
TseFI	GTSAC	2 cut(s)	563, 1775
TseI	GCWGC	4 cut(s)	860, 956, 1521, 1618
Tsp45I	GTSAC	2 cut(s)	563, 1775
TspDTI	ATGAA	8 cut(s)	29, 50, 1027, 1049, 1377, 1474, 1644, 1986
TspRI	CASTG	5 cut(s)	294, 883, 1728, 1969, 1987
Van91I	CCANNNNNTGG	1 cut(s)	1786
VpaK11BI	GGWCC	2 cut(s)	701, 1833
XapI	RAATTY	9 cut(s)	16, 187, 195, 739, 808, 966, 1303, 1678, 1906
XceI	RCATGY	4 cut(s)	86, 155, 851, 1894
XmnI	GAANNNNTTC	2 cut(s)	1397, 1681
XspI	CTAG	2 cut(s)	216, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.