Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0018486

Physical Location & Seq

Genomic Coordinates Forward (+)

22698383 .. 22700285

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1113000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCCTTCTCTCCTTCCTCTATCTACGACAAATCGAACAACCAGGGCTTGGATGGAGGGTTTGGCAGGTCCGACGATCCGATTTTTCCGCCTCCGTCGGCGATGCTGCCTGAGGAAGGCTTCGCTCTTGGAGGATGGAGGAGGTGTGCAATGTGATCTCCCATTTGAGTTTCAGGTTCTGGATATTGCACTAGAAGTTGTCTGTACATACTTGACTTCAAGTGTGGCATACCTTGAGAAAGAATCCTACCCTGTTTTAGATGAACTGGCCAGAAATGTGGCAGCGCTTAATCTATCTAGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

102

Amino Acids

11.37

Weight (kDa)

6.28

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018486)

Species	Orthologous Gene IDs
malus_domestica	MD01G1113000.v1.1 MD03G1180200.v1.1 MD06G1066300.v1.1 MD08G1041400.v1.1 MD09G1038800.v1.1 MD15G1304300.v1.1
prunus_persica	Prupe.2G272900_v2.0.a1 Prupe.3G166200_v2.0.a1 Prupe.7G028200_v2.0.a1
rosa_multiflora	Rmu_sc0002990.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	48
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	267
AfaI	GTAC	1 cut(s)	205
AfeI	AGCGCT	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	48, 115
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	41
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	1 cut(s)	178
Aor51HI	AGCGCT	1 cut(s)	285
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	105, 281
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	68
AxyI	CCTNAGG	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	92, 293
BccI	CCATC	2 cut(s)	46, 128
BciT130I	CCWGG	1 cut(s)	43
BfaI	CTAG	2 cut(s)	191, 297
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	106, 282
BlsI	GCNGC	2 cut(s)	107, 283
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 115
Bse1I	ACTGG	1 cut(s)	270
Bse21I	CCTNAGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	57, 139
BseLI	CCNNNNNNNGG	2 cut(s)	48, 115
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	92, 293
BshFI	GGCC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	48, 115
BsnI	GGCC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	75, 154
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	75, 154
Bst2UI	CCWGG	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	57, 139
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	2 cut(s)	78, 157
BstMBI	GATC	2 cut(s)	75, 154
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	92, 293
BstXI	CCANNNNNNTGG	1 cut(s)	277
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	57, 139
BveI	ACCTGC	1 cut(s)	56
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	204
CviJI	RGCY	3 cut(s)	47, 119, 269
CviKI_1	RGCY	3 cut(s)	47, 119, 269
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	77, 156
DpnII	GATC	2 cut(s)	75, 154
EaeI	YGGCCR	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	41
FaiI	YATR	2 cut(s)	208, 229
Fnu4HI	GCNGC	2 cut(s)	106, 282
FokI	GGATG	2 cut(s)	64, 146
Fsp4HI	GCNGC	2 cut(s)	106, 282
FspBI	CTAG	2 cut(s)	191, 297
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	106, 282
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	72, 80
Hpy188III	TCNNGA	2 cut(s)	179, 297
Hpy99I	CGWCG	2 cut(s)	76, 99
HpyAV	CCTTC	3 cut(s)	15, 23, 109
HpyCH4V	TGCA	2 cut(s)	148, 188
HpyF3I	CTNAG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	75, 154
LpnPI	CCDG	9 cut(s)	28, 51, 55, 122, 158, 164, 251, 264, 283
Lsp1109I	GCAGC	2 cut(s)	92, 293
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	191, 297
MalI	GATC	2 cut(s)	77, 156
MboI	GATC	2 cut(s)	75, 154
MlsI	TGGCCA	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	7 cut(s)	27, 49, 101, 105, 124, 131, 134
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	75, 154
PfeI	GAWTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	107, 283
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	106, 282
Sau3AI	GATC	2 cut(s)	75, 154
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	4 cut(s)	70, 145, 177, 234
SfaNI	GCATC	1 cut(s)	92
SinI	GGWCC	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	2 cut(s)	191, 297
StyD4I	CCNGG	1 cut(s)	41
TaqI	TCGA	1 cut(s)	34
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	2 cut(s)	105, 281
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	68
XagI	CCTNNNNNAGG	1 cut(s)	113
XbaI	TCTAGA	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	191, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.