Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0018486

Physical Location & Seq

Genomic Coordinates Forward (+)

3053635 .. 3057517

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1041400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCGGAAACATTCGTACTCGCTTTTCAGCACTATATTGTGATGCTCGGATCCATAGTTATAATTGCCACTAGTTTCGTGCCTCGGATGGGTGGGGATCATGGTGACAAGGCACGCGTGATTCAGACGATGCTGTTTATGGCAGCAATAAACACTTTGATCCAAACATTCACGGGACAAGGCTTCCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

65

Amino Acids

7.06

Weight (kDa)

6.7

Isoelectric Point (pI)

22.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xan_ur_permease	PF00860	3 - 60	1.7e-06	Permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018486)

Species	Orthologous Gene IDs
malus_domestica	MD01G1113000.v1.1 MD03G1180200.v1.1 MD06G1066300.v1.1 MD08G1041400.v1.1 MD09G1038800.v1.1 MD15G1304300.v1.1
prunus_persica	Prupe.2G272900_v2.0.a1 Prupe.3G166200_v2.0.a1 Prupe.7G028200_v2.0.a1
rosa_multiflora	Rmu_sc0002990.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	4 cut(s)	45, 58, 105, 154
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	115
AhlI	ACTAGT	1 cut(s)	71
AlwI	GGATC	4 cut(s)	45, 58, 105, 154
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	82
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	2 cut(s)	33, 120
BsaJI	CCNNGG	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	50, 97, 159
BspACI	CCGC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	4 cut(s)	45, 58, 105, 154
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	3 cut(s)	50, 97, 159
Bst4CI	ACNGT	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	53, 100, 162
BstMBI	GATC	3 cut(s)	50, 97, 159
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	1 cut(s)	183
CviKI_1	RGCY	1 cut(s)	183
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	3 cut(s)	52, 99, 161
DpnII	GATC	3 cut(s)	50, 97, 159
EciI	GGCGGA	1 cut(s)	20
FaeI	CATG	1 cut(s)	104
FaiI	YATR	5 cut(s)	36, 56, 62, 102, 140
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	50, 87, 126
HpyCH4III	ACNGT	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	50, 97, 159
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	2 cut(s)	33, 120
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	3 cut(s)	52, 99, 161
MboI	GATC	3 cut(s)	50, 97, 159
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	63
MluI	ACGCGT	1 cut(s)	115
MnlI	CCTC	1 cut(s)	93
MvnI	CGCG	1 cut(s)	117
NdeII	GATC	3 cut(s)	50, 97, 159
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	50, 97, 159
SfaNI	GCATC	2 cut(s)	33, 120
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	192
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	104
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.