Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0018486

Physical Location & Seq

Genomic Coordinates Reverse (-)

29584223 .. 29585162

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1304300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAATGTTTCAACCAGAAGGCAATGGTTACCAGTTTCTGAAGCCGTTAAAGGTGTGCAGTGTGATCTCCCATTTGAGTTTCAAGTTCTGGAGATTGCACTAGAAGTTGTCTGTACATACTTGAATTCAAGTGTGGCAGACCTTGAGAGAGAATCCTACCCTGTTTTAGATGAATTGGCCAGAAATGTGGCAGCGCTTAATCTATCTCGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

72

Amino Acids

8.03

Weight (kDa)

4.53

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018486)

Species	Orthologous Gene IDs
malus_domestica	MD01G1113000.v1.1 MD03G1180200.v1.1 MD06G1066300.v1.1 MD08G1041400.v1.1 MD09G1038800.v1.1 MD15G1304300.v1.1
prunus_persica	Prupe.2G272900_v2.0.a1 Prupe.3G166200_v2.0.a1 Prupe.7G028200_v2.0.a1
rosa_multiflora	Rmu_sc0002990.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	115
AfeI	AGCGCT	1 cut(s)	195
AgsI	TTSAA	4 cut(s)	12, 83, 124, 129
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	207
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	113
BstEII	GGTNACC	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	203
BstXI	CCANNNNNNTGG	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	65
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	2 cut(s)	44, 179
CviKI_1	RGCY	2 cut(s)	44, 179
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	177
Eco47III	AGCGCT	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	124
FaiI	YATR	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	89, 207, 209
HpyAV	CCTTC	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	58, 98
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	28, 45, 74, 174, 193
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	2 cut(s)	124, 173
MluNI	TGGCCA	1 cut(s)	179
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	2 cut(s)	48, 198
Msp20I	TGGCCA	1 cut(s)	179
NdeII	GATC	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	48, 198
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	64
SetI	ASST	2 cut(s)	55, 144
Sfr274I	CTCGAG	1 cut(s)	207
SlaI	CTCGAG	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	143, 207
SmoI	CTYRAG	2 cut(s)	143, 207
Sse9I	AATT	2 cut(s)	124, 173
SspMI	CTAG	1 cut(s)	101
TaqI	TCGA	1 cut(s)	208
TasI	AATT	2 cut(s)	124, 173
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	2 cut(s)	48, 198
Tru9I	TTAA	2 cut(s)	48, 198
TscAI	CASTG	1 cut(s)	65
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	17, 186
TspRI	CASTG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	207
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.