MD02G1122600.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0019126
Physical Location & Seq
Forward (+)
9976622 .. 9976840
219 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1122600.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGGTCAATGCATATCTAGGCAAGTGAAGAGAAGAGGGCTGGGTGGTGGTTCTTCAAGTTGTTCTTCTTCTGGAGGCAGCGGCGGCGGAGGCGGCGGTGCTGGGTGTGCAGTGGGGCAAGGATGTTGGAGCATGATAAGAGAGAAAAGGTCCAGGTTCTATATTGCTAGGAGATGTGTGGTGATGCTACTTTGTTGGCAGAAGTATGGCAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

73

Amino Acids

7.57

Weight (kDa)

10.19

Isoelectric Point (pI)

79.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 47 - 65 1e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18518 AT4G35783
malus_domestica MD02G1122600.v1.1
prunus_persica Prupe.7G175900_v2.0.a1
pyrus_communis pycom02g09560
rosa_chinensis RchiOBHm_Chr2g0098221
rosa_roxburghii Rroxscaffold_2G00144150
rosa_wichuraiana Rw2G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 81, 84, 87, 93, 96
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 154
BfaI CTAG 2 cut(s) 18, 168
BisI GCNGC 4 cut(s) 79, 82, 85, 94
BlsI GCNGC 4 cut(s) 80, 83, 86, 95
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 2 cut(s) 40, 101
BsgI GTGCAG 1 cut(s) 129
BspACI CCGC 5 cut(s) 81, 84, 87, 93, 96
Bst2UI CCWGG 1 cut(s) 154
Bst6I CTCTTC 2 cut(s) 23, 28
BstF5I GGATG 1 cut(s) 128
BstMWI GCNNNNNNNGC 4 cut(s) 84, 90, 93, 107
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 150
CviAII CATG 1 cut(s) 133
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 23, 28
EarI CTCTTC 2 cut(s) 23, 28
EciI GGCGGA 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 14
FaeI CATG 1 cut(s) 136
FaiI YATR 4 cut(s) 14, 134, 162, 207
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 79, 82, 85, 94
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 79, 82, 85, 94
FspBI CTAG 2 cut(s) 18, 168
GluI GCNGC 4 cut(s) 79, 82, 85, 94
GsaI CCCAGC 2 cut(s) 44, 105
GsuI CTGGAG 1 cut(s) 93
Hin1II CATG 1 cut(s) 136
HphI GGTGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 12, 110
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 90, 93, 107
Hsp92II CATG 1 cut(s) 136
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 5 cut(s) 26, 57, 87, 139, 166
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 174
MaeI CTAG 2 cut(s) 18, 168
MboII GAAGA 5 cut(s) 40, 45, 45, 57, 60
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 3 cut(s) 29, 68, 83
Mph1103I ATGCAT 1 cut(s) 14
MseI TTAA 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 4 cut(s) 84, 90, 93, 107
NlaIII CATG 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 14
PkrI GCNGC 4 cut(s) 80, 83, 86, 95
Psp6I CCWGG 1 cut(s) 152
PspFI CCCAGC 2 cut(s) 40, 101
PspGI CCWGG 1 cut(s) 152
PspPI GGNCC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 217
SatI GCNGC 4 cut(s) 79, 82, 85, 94
Sau96I GGNCC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 154
SetI ASST 2 cut(s) 152, 158
SfaNI GCATC 1 cut(s) 174
SinI GGWCC 1 cut(s) 150
SsiI CCGC 5 cut(s) 81, 84, 87, 93, 96
SspMI CTAG 2 cut(s) 18, 168
StyD4I CCNGG 1 cut(s) 152
TauI GCSGC 3 cut(s) 84, 87, 96
Tru1I TTAA 1 cut(s) 217
Tru9I TTAA 1 cut(s) 217
TscAI CASTG 1 cut(s) 117
TseI GCWGC 1 cut(s) 78
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 150
XspI CTAG 2 cut(s) 18, 168
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.