pycom02g09560

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0019126
Physical Location & Seq
Forward (+)
6611881 .. 6612105
225 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09560.1

Sequence Viewer

Length: 225 bp
ATGGGCCAATGCATATCTAGGCAAGTGAAGAGAAGAGGGCTGGGTAGTGGTTCTTCAAGTTGTTCTTCTTCTGGAGGCAGCAGTGGCGGCGGAGGTGGCGGTGCTGGGTGTGCAGTGGGGAAAGGATGTTGGAGCATGATAAGAGAGAAAAGGTCCAGGTTCTATATTGCTAGGAGATGTGTGGTGATGCTACTTTGTTGGCATAAATATGGCAAGTATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

75

Amino Acids

7.83

Weight (kDa)

10.32

Isoelectric Point (pI)

81.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 48 - 66 1.1e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18518 AT4G35783
malus_domestica MD02G1122600.v1.1
prunus_persica Prupe.7G175900_v2.0.a1
pyrus_communis pycom02g09560
rosa_chinensis RchiOBHm_Chr2g0098221
rosa_roxburghii Rroxscaffold_2G00144150
rosa_wichuraiana Rw2G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 90, 99
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 1 cut(s) 155
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 4, 153
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 153
BarI GAAGNNNNNNTAC 2 cut(s) 37, 69
BbvI GCAGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 157
BfaI CTAG 2 cut(s) 18, 171
BisI GCNGC 2 cut(s) 79, 88
BlsI GCNGC 2 cut(s) 80, 89
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 4, 153
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 90
BseYI CCCAGC 2 cut(s) 40, 104
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 1 cut(s) 6
BsnI GGCC 1 cut(s) 6
BspACI CCGC 3 cut(s) 87, 90, 99
BspANI GGCC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 157
Bst6I CTCTTC 2 cut(s) 23, 28
BstF5I GGATG 1 cut(s) 131
BstMWI GCNNNNNNNGC 4 cut(s) 84, 87, 96, 110
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 2 cut(s) 88, 120
BtsIMutI CAGTG 2 cut(s) 88, 120
Cfr13I GGNCC 2 cut(s) 4, 153
CviAII CATG 1 cut(s) 136
CviJI RGCY 2 cut(s) 6, 40
CviKI_1 RGCY 2 cut(s) 6, 40
Eam1104I CTCTTC 2 cut(s) 23, 28
EarI CTCTTC 2 cut(s) 23, 28
EciI GGCGGA 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 14
FaeI CATG 1 cut(s) 139
FaiI YATR 6 cut(s) 14, 137, 165, 204, 210, 219
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 79, 88
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 79, 88
FspBI CTAG 2 cut(s) 18, 171
GluI GCNGC 2 cut(s) 79, 88
GsaI CCCAGC 2 cut(s) 44, 108
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 6
Hin1II CATG 1 cut(s) 139
HphI GGTGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 12, 113
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 87, 96, 110
Hsp92II CATG 1 cut(s) 139
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 5 cut(s) 26, 57, 90, 142, 169
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 18, 171
MboII GAAGA 5 cut(s) 40, 45, 45, 57, 60
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 3 cut(s) 29, 68, 86
Mph1103I ATGCAT 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 4 cut(s) 84, 87, 96, 110
NlaIII CATG 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 14
PkrI GCNGC 2 cut(s) 80, 89
Psp6I CCWGG 1 cut(s) 155
PspFI CCCAGC 2 cut(s) 40, 104
PspGI CCWGG 1 cut(s) 155
PspPI GGNCC 2 cut(s) 4, 153
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 2 cut(s) 79, 88
Sau96I GGNCC 2 cut(s) 4, 153
ScrFI CCNGG 1 cut(s) 157
SetI ASST 3 cut(s) 97, 155, 161
SfaNI GCATC 1 cut(s) 177
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 207
SsiI CCGC 3 cut(s) 87, 90, 99
SspMI CTAG 2 cut(s) 18, 171
StyD4I CCNGG 1 cut(s) 155
TauI GCSGC 1 cut(s) 90
TscAI CASTG 2 cut(s) 88, 120
TseI GCWGC 1 cut(s) 78
TspRI CASTG 2 cut(s) 88, 120
VpaK11BI GGWCC 1 cut(s) 153
XspI CTAG 2 cut(s) 18, 171
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.