Rw2G009280

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019126
Physical Location & Seq
Forward (+)
9329919 .. 9330350
432 bp
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UTR
Exon/CDS
Intron
Rw2G009280.1

Sequence Viewer

Length: 183 bp
ATGGGTCAATGCACGTCGAAGCAGCGTAGAGGAGGAGGGCTGAATGGTAATTGTGGTGGGTGTGCTGAGACGACTAGGCGTGGATGCTTGAGCATTAATGTGAGGGAGAAGAGATCCAGGTTCTATATTGTTAGGAAGTGTGTGATTATGCTTCTTTGTTGGCACAAATATGGCAAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

60

Amino Acids

6.85

Weight (kDa)

10.08

Isoelectric Point (pI)

66.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 35 - 53 2.7e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18518 AT4G35783
malus_domestica MD02G1122600.v1.1
prunus_persica Prupe.7G175900_v2.0.a1
pyrus_communis pycom02g09560
rosa_chinensis RchiOBHm_Chr2g0098221
rosa_roxburghii Rroxscaffold_2G00144150
rosa_wichuraiana Rw2G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 108
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 22
AseI ATTAAT 1 cut(s) 96
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 118
BmgBI CACGTC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 45, 48
BseXI GCAGC 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 108
BssMI GATC 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 89
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 62
FaiI YATR 3 cut(s) 126, 149, 171
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 14
Kzo9I GATC 1 cut(s) 113
LpnPI CCDG 2 cut(s) 103, 130
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 74
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 14
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 1 cut(s) 121
MflI RGATCY 1 cut(s) 113
MluCI AATT 1 cut(s) 49
MnlI CCTC 4 cut(s) 23, 26, 29, 96
MseI TTAA 2 cut(s) 96, 181
MslI CAYNNNNRTG 2 cut(s) 98, 168
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
NdeII GATC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 24
PshBI ATTAAT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 113
RseI CAYNNNNRTG 2 cut(s) 98, 168
SaqAI TTAA 2 cut(s) 96, 181
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 118
SetI ASST 2 cut(s) 17, 122
SfaNI GCATC 1 cut(s) 74
SgeI CNNG 6 cut(s) 25, 87, 92, 100, 129, 130
SmiMI CAYNNNNRTG 2 cut(s) 98, 168
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 49
Tru1I TTAA 2 cut(s) 96, 181
Tru9I TTAA 2 cut(s) 96, 181
TseI GCWGC 1 cut(s) 22
VspI ATTAAT 1 cut(s) 96
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.