Rroxscaffold_2G00144150

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019126
Physical Location & Seq
Reverse (-)
82114144 .. 82116237
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144150.1

Sequence Viewer

Length: 321 bp
ATGGGTCAATGCACGTCGAAGCAGCGTAGAGGAGGAGGGCTGAATGGTAATTGTGGTGGGTGTGCTGAGACGACTAGGCGTGGATGCTTGAGCATTGTGAGGGAGAAGAGATCCAGGTTCTATATTGTTAGGAAGTGTGTGATTATGCTTCTTTGTTGGCACAAGTATGGCAAGTTAAAAGATAAACCAAACAAAACCAACCAACTAATCCATGGGATCGATAATTTGCCCCACAAGTTCACGTCTGCAATATGTCCAAAATGGTACCCTGCTCACTGCTTTAAAAAATTTCAAAATGAATCTCAACAATTAGCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

9.92

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 34 - 52 7.3e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019126)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18518 AT4G35783
malus_domestica MD02G1122600.v1.1
prunus_persica Prupe.7G175900_v2.0.a1
pyrus_communis pycom02g09560
rosa_chinensis RchiOBHm_Chr2g0098221
rosa_roxburghii Rroxscaffold_2G00144150
rosa_wichuraiana Rw2G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 264
AclWI GGATC 2 cut(s) 105, 224
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 266
AgsI TTSAA 1 cut(s) 293
AjiI CACGTC 2 cut(s) 15, 243
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 2 cut(s) 105, 224
ApeKI GCWGC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 287
Asp718I GGTACC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 115
BmgBI CACGTC 2 cut(s) 15, 243
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 115
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 45, 48
BseXI GCAGC 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 110, 216
Bsp19I CCATGG 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 58
BspDI ATCGAT 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 2 cut(s) 105, 224
BspT107I GGYRCC 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 2 cut(s) 110, 216
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 113, 219
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 110, 216
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 219
BsuTUI ATCGAT 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 211
BtrI CACGTC 2 cut(s) 15, 243
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 316
ClaI ATCGAT 1 cut(s) 219
Csp6I GTAC 1 cut(s) 265
CviAII CATG 1 cut(s) 212
CviJI RGCY 3 cut(s) 40, 314, 318
CviKI_1 RGCY 3 cut(s) 40, 314, 318
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 112, 218
DpnII GATC 2 cut(s) 110, 216
DraI TTTAAA 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 1 cut(s) 215
FaiI YATR 5 cut(s) 123, 146, 168, 213, 253
FatI CATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 215
HinfI GANTC 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 19
HpyCH4IV ACGT 2 cut(s) 14, 242
HpyCH4V TGCA 2 cut(s) 12, 248
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 2 cut(s) 14, 242
Hsp92II CATG 1 cut(s) 215
KpnI GGTACC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 110, 216
LpnPI CCDG 3 cut(s) 100, 127, 282
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 74
MaeI CTAG 1 cut(s) 75
MaeII ACGT 2 cut(s) 14, 242
MalI GATC 2 cut(s) 112, 218
MboI GATC 2 cut(s) 110, 216
MboII GAAGA 1 cut(s) 118
MflI RGATCY 1 cut(s) 110
MluCI AATT 4 cut(s) 49, 223, 287, 308
MnlI CCTC 4 cut(s) 23, 26, 29, 93
MseI TTAA 2 cut(s) 176, 282
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
NcoI CCATGG 1 cut(s) 211
NdeII GATC 2 cut(s) 110, 216
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 110
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 176, 282
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 2 cut(s) 110, 216
ScrFI CCNGG 1 cut(s) 115
SetI ASST 4 cut(s) 17, 119, 245, 320
SfaNI GCATC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 4 cut(s) 49, 223, 287, 308
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 2 cut(s) 17, 245
TaqI TCGA 2 cut(s) 17, 219
TasI AATT 4 cut(s) 49, 223, 287, 308
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 2 cut(s) 176, 282
Tru9I TTAA 2 cut(s) 176, 282
TscAI CASTG 1 cut(s) 281
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 281
XapI RAATTY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.