Ring finger domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51325 |
| fragaria_vesca | FvH4_1g11280 |
| malus_domestica | MD02G1125300.v1.1 MD15G1241000.v1.1 |
| prunus_persica | Prupe.7G173200_v2.0.a1 |
| pyrus_communis | pycom15g21250 |
| rosa_chinensis | RchiOBHm_Chr2g0098751 |
| rosa_laevigata | RLG00000016825 |
| rosa_roxburghii | Rroxscaffold_2G00143740 |
| rosa_rugosa | Rorug02G0074600 |
| rosa_samantha | Rh2AG122200 Rh2BG125900 Rh2CG126800 Rh2DG127900 |
| rosa_wichuraiana | Rw0G004230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 82 |
| AcsI | RAATTY | 1 cut(s) | 152 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 165, 316, 323 |
| AjiI | CACGTC | 1 cut(s) | 297 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 93, 125 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 260, 292 |
| Alw21I | GWGCWC | 1 cut(s) | 88 |
| Alw26I | GTCTC | 1 cut(s) | 342 |
| AlwI | GGATC | 1 cut(s) | 82 |
| Ama87I | CYCGRG | 1 cut(s) | 46 |
| AoxI | GGCC | 1 cut(s) | 43 |
| ApoI | RAATTY | 1 cut(s) | 152 |
| AspS9I | GGNCC | 1 cut(s) | 44 |
| AsuHPI | GGTGA | 1 cut(s) | 224 |
| AvaI | CYCGRG | 1 cut(s) | 46 |
| BaeGI | GKGCMC | 1 cut(s) | 302 |
| BauI | CACGAG | 2 cut(s) | 87, 245 |
| Bbv12I | GWGCWC | 1 cut(s) | 88 |
| BcoDI | GTCTC | 1 cut(s) | 342 |
| BfaI | CTAG | 1 cut(s) | 33 |
| BmeT110I | CYCGRG | 1 cut(s) | 46 |
| BmgBI | CACGTC | 1 cut(s) | 297 |
| BmgT120I | GGNCC | 1 cut(s) | 44 |
| BmsI | GCATC | 2 cut(s) | 64, 271 |
| BpuEI | CTTGAG | 1 cut(s) | 132 |
| BsaWI | WCCGGW | 1 cut(s) | 316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 356, 386 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 165, 316, 323 |
| Bse118I | RCCGGY | 1 cut(s) | 309 |
| Bse1I | ACTGG | 1 cut(s) | 159 |
| BseGI | GGATG | 2 cut(s) | 55, 297 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 165, 316, 323 |
| BseMII | CTCAG | 2 cut(s) | 351, 353 |
| BseNI | ACTGG | 1 cut(s) | 159 |
| BseRI | GAGGAG | 2 cut(s) | 339, 377 |
| BseSI | GKGCMC | 1 cut(s) | 302 |
| BsgI | GTGCAG | 1 cut(s) | 227 |
| BshFI | GGCC | 1 cut(s) | 45 |
| BsiHKAI | GWGCWC | 1 cut(s) | 88 |
| BsiHKCI | CYCGRG | 1 cut(s) | 46 |
| BsiSI | CCGG | 4 cut(s) | 59, 289, 310, 317 |
| BslFI | GGGAC | 1 cut(s) | 182 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 165, 316, 323 |
| BsmAI | GTCTC | 1 cut(s) | 342 |
| BsmFI | GGGAC | 1 cut(s) | 182 |
| BsmI | GAATGC | 1 cut(s) | 17 |
| BsnI | GGCC | 1 cut(s) | 45 |
| BsoBI | CYCGRG | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 302 |
| Bsp143I | GATC | 2 cut(s) | 27, 74 |
| BspANI | GGCC | 1 cut(s) | 45 |
| BspCNI | CTCAG | 2 cut(s) | 352, 352 |
| BspPI | GGATC | 1 cut(s) | 82 |
| BsrFI | RCCGGY | 1 cut(s) | 309 |
| BsrI | ACTGG | 1 cut(s) | 159 |
| BssAI | RCCGGY | 1 cut(s) | 309 |
| BssMI | GATC | 2 cut(s) | 27, 74 |
| BssSI | CACGAG | 2 cut(s) | 87, 245 |
| Bst2BI | CACGAG | 2 cut(s) | 87, 245 |
| Bst6I | CTCTTC | 2 cut(s) | 123, 210 |
| BstC8I | GCNNGC | 2 cut(s) | 242, 286 |
| BstDEI | CTNAG | 2 cut(s) | 339, 360 |
| BstF5I | GGATG | 2 cut(s) | 55, 297 |
| BstKTI | GATC | 2 cut(s) | 30, 77 |
| BstMAI | GTCTC | 1 cut(s) | 342 |
| BstMBI | GATC | 2 cut(s) | 27, 74 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 306 |
| BstSLI | GKGCMC | 1 cut(s) | 302 |
| BstX2I | RGATCY | 1 cut(s) | 74 |
| BstYI | RGATCY | 1 cut(s) | 74 |
| BsuRI | GGCC | 1 cut(s) | 45 |
| BtrI | CACGTC | 1 cut(s) | 297 |
| BtsCI | GGATG | 2 cut(s) | 55, 297 |
| BtsIMutI | CAGTG | 1 cut(s) | 357 |
| Cac8I | GCNNGC | 2 cut(s) | 242, 286 |
| Cfr10I | RCCGGY | 1 cut(s) | 309 |
| Cfr13I | GGNCC | 1 cut(s) | 44 |
| CviAII | CATG | 1 cut(s) | 223 |
| CviJI | RGCY | 1 cut(s) | 45 |
| CviKI_1 | RGCY | 1 cut(s) | 45 |
| DdeI | CTNAG | 2 cut(s) | 339, 360 |
| DpnI | GATC | 2 cut(s) | 29, 76 |
| DpnII | GATC | 2 cut(s) | 27, 74 |
| Eam1104I | CTCTTC | 2 cut(s) | 123, 210 |
| EarI | CTCTTC | 2 cut(s) | 123, 210 |
| Eco88I | CYCGRG | 1 cut(s) | 46 |
| FaeI | CATG | 1 cut(s) | 226 |
| FaiI | YATR | 5 cut(s) | 224, 262, 371, 376, 393 |
| FaqI | GGGAC | 1 cut(s) | 182 |
| FatI | CATG | 1 cut(s) | 222 |
| FokI | GGATG | 2 cut(s) | 42, 304 |
| FspBI | CTAG | 1 cut(s) | 33 |
| HaeIII | GGCC | 1 cut(s) | 45 |
| HapII | CCGG | 4 cut(s) | 59, 289, 310, 317 |
| Hin1II | CATG | 1 cut(s) | 226 |
| HincII | GTYRAC | 1 cut(s) | 331 |
| HindII | GTYRAC | 1 cut(s) | 331 |
| HinfI | GANTC | 1 cut(s) | 101 |
| HpaII | CCGG | 4 cut(s) | 59, 289, 310, 317 |
| HphI | GGTGA | 1 cut(s) | 224 |
| Hpy166II | GTNNAC | 1 cut(s) | 331 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 208 |
| Hpy188III | TCNNGA | 4 cut(s) | 10, 89, 149, 198 |
| Hpy8I | GTNNAC | 1 cut(s) | 331 |
| HpyAV | CCTTC | 1 cut(s) | 203 |
| HpyCH4IV | ACGT | 1 cut(s) | 296 |
| HpyCH4V | TGCA | 1 cut(s) | 244 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 306 |
| HpyF3I | CTNAG | 2 cut(s) | 339, 360 |
| HpySE526I | ACGT | 1 cut(s) | 296 |
| Hsp92II | CATG | 1 cut(s) | 226 |
| Kzo9I | GATC | 2 cut(s) | 27, 74 |
| LpnPI | CCDG | 8 cut(s) | 72, 172, 254, 302, 323, 326, 330, 384 |
| LweI | GCATC | 2 cut(s) | 64, 271 |
| MaeI | CTAG | 1 cut(s) | 33 |
| MaeII | ACGT | 1 cut(s) | 296 |
| MalI | GATC | 2 cut(s) | 29, 76 |
| MboI | GATC | 2 cut(s) | 27, 74 |
| MboII | GAAGA | 6 cut(s) | 31, 127, 140, 224, 227, 375 |
| MflI | RGATCY | 1 cut(s) | 74 |
| MhlI | GDGCHC | 2 cut(s) | 88, 302 |
| MluCI | AATT | 1 cut(s) | 152 |
| MmeI | TCCRAC | 1 cut(s) | 186 |
| MseI | TTAA | 1 cut(s) | 69 |
| MspI | CCGG | 4 cut(s) | 59, 289, 310, 317 |
| Mva1269I | GAATGC | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 306 |
| NdeII | GATC | 2 cut(s) | 27, 74 |
| NlaIII | CATG | 1 cut(s) | 226 |
| PctI | GAATGC | 1 cut(s) | 17 |
| PfeI | GAWTC | 1 cut(s) | 101 |
| PspPI | GGNCC | 1 cut(s) | 44 |
| PsuI | RGATCY | 1 cut(s) | 74 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| Sau3AI | GATC | 2 cut(s) | 27, 74 |
| Sau96I | GGNCC | 1 cut(s) | 44 |
| SduI | GDGCHC | 2 cut(s) | 88, 302 |
| SetI | ASST | 5 cut(s) | 180, 214, 261, 299, 345 |
| SfaNI | GCATC | 2 cut(s) | 64, 271 |
| SmlI | CTYRAG | 2 cut(s) | 8, 147 |
| SmoI | CTYRAG | 2 cut(s) | 8, 147 |
| Sse9I | AATT | 1 cut(s) | 152 |
| SspMI | CTAG | 1 cut(s) | 33 |
| TaiI | ACGT | 1 cut(s) | 299 |
| TaqI | TCGA | 2 cut(s) | 99, 279 |
| TasI | AATT | 1 cut(s) | 152 |
| TfiI | GAWTC | 1 cut(s) | 101 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TscAI | CASTG | 1 cut(s) | 364 |
| TspDTI | ATGAA | 1 cut(s) | 380 |
| TspGWI | ACGGA | 1 cut(s) | 69 |
| TspRI | CASTG | 1 cut(s) | 364 |
| XapI | RAATTY | 1 cut(s) | 152 |
| XspI | CTAG | 1 cut(s) | 33 |