Rorug02G0074600

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010213
Physical Location & Seq
Forward (+)
5921110 .. 5923932
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0074600.1

Sequence Viewer

Length: 810 bp
ATGTGTGCACTATTCAAACTTAGCACCGAGCGCTTATTCACTGCCCTGAACAACCAGAGCTCTCTATCTCTGCGACGACGCTTCTTCTGCAGCACAGTTTCCGATGGCTTCATTCACCCCTCTGCGATCGTTCACCCCAATGCCGTTCTCGGCCAGGGTGTTTCAATTGGGCCCTTTTGTACTGTTGGGTCGTCGGTGAAGCTCGGAAATGGCTGCCGGTTACATCCCGGAAGCCATATTTTTGGGAATACTGAAGTTGGGGAGCGTTGTGTTTTGATGACTGGTGCCATTGTTGGTGATGATCTTCCGGGGCGTACTGTGCTGGGTTGCAATAATGTTATTGGATATCATGCTGTGGTTGGTGTTAAATGCCAGGACATGAAATACAAGTCAGGGGATGAATGCTTTCTTGATGTTGGGGACAACAATGAGATCAGAGAGCATGCTTCAATCCATCGATCTTCGAAGTCAAGTGATACTACAGTTATTGGGAATAACAATCTTATCATGGGTTCTTGCCATATTGCCCATGATTGCAAGGTTGGGAACAACGTTATTTTTGCGAATAATACCCTTCTGGCAGGCCATGTTGTGGTGGAAGATTATGCTCACACTGCAGGGGCTGTTGTTGTTCATCAATTCTGTCATGTTGGTTCTTTCGCTTTCATTGGCGGTGGCTCTGTGATTGCACAGGATGTTCCAAAGTACATGATGGTTGCAGGAGAAAGAGCTCAGCTCCGTGGTTTGAATCTTGAGGGTCTACGGCGTCATGGATTCACAGTGGCAGAGGATCTAGATCAGAAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

269

Amino Acids

28.75

Weight (kDa)

6.9

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMPPB_C PF25087 39 - 101 2e-08 GMPPB C-terminal domain
Hexapep PF00132 47 - 81 1.3e-08 Bacterial transferase hexapeptide (six repeats)
Hexapep PF00132 161 - 194 1.4e-09 Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11 PF13720 232 - 261 5.9e-10 Udp N-acetylglucosamine O-acyltransferase; Domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 592
AccI GTMKAC 1 cut(s) 760
AciI CCGC 1 cut(s) 672
AclI AACGTT 1 cut(s) 552
AclWI GGATC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 766
AfaI GTAC 3 cut(s) 181, 316, 707
AfeI AGCGCT 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 592
AgsI TTSAA 4 cut(s) 16, 165, 450, 748
AjnI CCWGG 2 cut(s) 153, 372
AluBI AGCT 4 cut(s) 60, 202, 731, 736
AluI AGCT 4 cut(s) 60, 202, 731, 736
Alw21I GWGCWC 3 cut(s) 10, 62, 733
Alw44I GTGCAC 1 cut(s) 6
AlwI GGATC 1 cut(s) 798
AlwNI CAGNNNCTG 1 cut(s) 623
Aor51HI AGCGCT 1 cut(s) 32
AoxI GGCC 3 cut(s) 151, 170, 583
ApaI GGGCCC 1 cut(s) 174
ApaLI GTGCAC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 90, 213
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 170, 171
AsuC2I CCSGG 2 cut(s) 228, 309
AsuHPI GGTGA 4 cut(s) 107, 125, 208, 308
AsuII TTCGAA 1 cut(s) 464
BaeGI GKGCMC 2 cut(s) 10, 174
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 3 cut(s) 62, 174, 733
Bbv12I GWGCWC 3 cut(s) 10, 62, 733
BbvI GCAGC 2 cut(s) 102, 200
BccI CCATC 3 cut(s) 98, 462, 706
BceAI ACGGC 2 cut(s) 128, 779
BciT130I CCWGG 2 cut(s) 155, 374
BcnI CCSGG 2 cut(s) 228, 309
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 3 cut(s) 88, 480, 615
BfoI RGCGCY 1 cut(s) 34
BisI GCNGC 2 cut(s) 91, 214
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 2 cut(s) 92, 215
Bme1390I CCNGG 4 cut(s) 155, 228, 309, 374
BmgT120I GGNCC 2 cut(s) 170, 171
BmiI GGNNCC 2 cut(s) 172, 286
BmrFI CCNGG 4 cut(s) 155, 228, 309, 374
BplI GAGNNNNNCTC 2 cut(s) 720, 752
Bpu1102I GCTNAGC 1 cut(s) 732
Bpu14I TTCGAA 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 773
BpuMI CCSGG 2 cut(s) 228, 309
Bsa29I ATCGAT 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 795
BsaHI GRCGYC 1 cut(s) 766
BsaJI CCNNGG 3 cut(s) 154, 308, 739
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 795
BseBI CCWGG 2 cut(s) 155, 374
BseCI ATCGAT 1 cut(s) 457
BseDI CCNNGG 3 cut(s) 154, 308, 739
BseGI GGATG 3 cut(s) 223, 403, 700
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 1 cut(s) 286
BseSI GKGCMC 2 cut(s) 10, 174
BseXI GCAGC 2 cut(s) 102, 200
BseYI CCCAGC 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 153, 172, 585
BshNI GGYRCC 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 457
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 3 cut(s) 10, 62, 733
BsiSI CCGG 3 cut(s) 217, 228, 308
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 3 cut(s) 153, 172, 585
Bsp119I TTCGAA 1 cut(s) 464
Bsp120I GGGCCC 1 cut(s) 170
Bsp1286I GDGCHC 4 cut(s) 10, 62, 174, 733
Bsp143I GATC 6 cut(s) 126, 301, 432, 458, 790, 796
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 1 cut(s) 672
BspANI GGCC 3 cut(s) 153, 172, 585
BspCNI CTCAG 1 cut(s) 745
BspDI ATCGAT 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 172, 286
BspMAI CTGCAG 2 cut(s) 92, 619
BspPI GGATC 1 cut(s) 798
BspT104I TTCGAA 1 cut(s) 464
BspT107I GGYRCC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 3 cut(s) 154, 308, 739
BssMI GATC 6 cut(s) 126, 301, 432, 458, 790, 796
BssNI GRCGYC 1 cut(s) 766
Bst2UI CCWGG 2 cut(s) 155, 374
Bst4CI ACNGT 5 cut(s) 97, 184, 319, 484, 781
BstACI GRCGYC 1 cut(s) 766
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 444, 583
BstDEI CTNAG 3 cut(s) 20, 732, 807
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 3 cut(s) 223, 403, 700
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 6 cut(s) 129, 304, 435, 461, 793, 799
BstMBI GATC 6 cut(s) 126, 301, 432, 458, 790, 796
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 4 cut(s) 30, 87, 319, 614
BstNI CCWGG 2 cut(s) 155, 374
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 153, 226, 307, 372
BstSFI CTRYAG 3 cut(s) 88, 480, 615
BstSLI GKGCMC 2 cut(s) 10, 174
BstV1I GCAGC 2 cut(s) 102, 200
BstX2I RGATCY 1 cut(s) 790
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 790
Bsu15I ATCGAT 1 cut(s) 457
BsuRI GGCC 3 cut(s) 153, 172, 585
BsuTUI ATCGAT 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 3 cut(s) 223, 403, 700
BtsI GCAGTG 2 cut(s) 39, 612
BtsIMutI CAGTG 3 cut(s) 39, 612, 786
Cac8I GCNNGC 2 cut(s) 444, 583
CaiI CAGNNNCTG 1 cut(s) 623
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 170, 171
ClaI ATCGAT 1 cut(s) 457
CseI GACGC 2 cut(s) 87, 755
Csp6I GTAC 3 cut(s) 180, 315, 706
CviAII CATG 9 cut(s) 350, 379, 443, 508, 530, 587, 647, 709, 770
CviQI GTAC 3 cut(s) 180, 315, 706
DdeI CTNAG 3 cut(s) 20, 732, 807
DpnI GATC 6 cut(s) 128, 303, 434, 460, 792, 798
DpnII GATC 6 cut(s) 126, 301, 432, 458, 790, 796
EaeI YGGCCR 1 cut(s) 151
Ecl136II GAGCTC 2 cut(s) 60, 731
Eco24I GRGCYC 3 cut(s) 62, 174, 733
Eco32I GATATC 1 cut(s) 347
Eco47III AGCGCT 1 cut(s) 32
Eco53kI GAGCTC 2 cut(s) 60, 731
Eco57I CTGAAG 1 cut(s) 273
EcoICRI GAGCTC 2 cut(s) 60, 731
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 153, 372
EcoRV GATATC 1 cut(s) 347
EcoT38I GRGCYC 3 cut(s) 62, 174, 733
FaeI CATG 9 cut(s) 353, 382, 446, 511, 533, 590, 650, 712, 773
FaqI GGGAC 1 cut(s) 434
FatI CATG 9 cut(s) 349, 378, 442, 507, 529, 586, 646, 708, 769
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 2 cut(s) 91, 214
FokI GGATG 3 cut(s) 210, 410, 707
FriOI GRGCYC 3 cut(s) 62, 174, 733
Fsp4HI GCNGC 2 cut(s) 91, 214
FspBI CTAG 1 cut(s) 794
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 91, 214
GsaI CCCAGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 3 cut(s) 153, 172, 585
HapII CCGG 3 cut(s) 217, 228, 308
HgaI GACGC 2 cut(s) 87, 755
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 766
Hin1II CATG 9 cut(s) 353, 382, 446, 511, 533, 590, 650, 712, 773
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 2 cut(s) 748, 774
HpaII CCGG 3 cut(s) 217, 228, 308
HphI GGTGA 4 cut(s) 107, 125, 208, 308
Hpy166II GTNNAC 3 cut(s) 8, 133, 761
Hpy188I TCNGA 4 cut(s) 103, 206, 437, 801
Hpy188III TCNNGA 3 cut(s) 410, 752, 794
Hpy8I GTNNAC 3 cut(s) 8, 133, 761
Hpy99I CGWCG 3 cut(s) 78, 81, 196
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 5 cut(s) 97, 184, 319, 484, 781
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 7 cut(s) 8, 90, 330, 537, 617, 689, 719
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 87, 319, 614
HpyF3I CTNAG 3 cut(s) 20, 732, 807
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 1 cut(s) 766
Hsp92II CATG 9 cut(s) 353, 382, 446, 511, 533, 590, 650, 712, 773
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 6 cut(s) 126, 301, 432, 458, 790, 796
LmnI GCTCC 2 cut(s) 262, 741
Lsp1109I GCAGC 2 cut(s) 102, 200
MaeI CTAG 1 cut(s) 794
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 219
MalI GATC 6 cut(s) 128, 303, 434, 460, 792, 798
MboI GATC 6 cut(s) 126, 301, 432, 458, 790, 796
MboII GAAGA 4 cut(s) 76, 296, 453, 611
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 4 cut(s) 10, 62, 174, 733
MluCI AATT 2 cut(s) 165, 638
MnlI CCTC 3 cut(s) 130, 748, 781
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 3 cut(s) 217, 228, 308
MspR9I CCNGG 4 cut(s) 155, 228, 309, 374
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 2 cut(s) 155, 374
MwoI GCNNNNNNNGC 4 cut(s) 30, 87, 319, 614
NciI CCSGG 2 cut(s) 228, 309
NdeII GATC 6 cut(s) 126, 301, 432, 458, 790, 796
NlaIII CATG 9 cut(s) 353, 382, 446, 511, 533, 590, 650, 712, 773
NlaIV GGNNCC 2 cut(s) 172, 286
NmeAIII GCCGAG 1 cut(s) 129
NspI RCATGY 1 cut(s) 446
NspV TTCGAA 1 cut(s) 464
PaeI GCATGC 1 cut(s) 446
PctI GAATGC 1 cut(s) 407
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 748, 774
PflMI CCANNNNNTGG 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 2 cut(s) 92, 215
Ple19I CGATCG 1 cut(s) 129
Psp124BI GAGCTC 2 cut(s) 62, 733
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 153, 372
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 2 cut(s) 153, 372
PspN4I GGNNCC 2 cut(s) 172, 286
PspOMI GGGCCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 170, 171
PstI CTGCAG 2 cut(s) 92, 619
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 1 cut(s) 790
PvuI CGATCG 1 cut(s) 129
RsaI GTAC 3 cut(s) 181, 316, 707
RsaNI GTAC 3 cut(s) 180, 315, 706
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 2 cut(s) 62, 733
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 91, 214
Sau3AI GATC 6 cut(s) 126, 301, 432, 458, 790, 796
Sau96I GGNCC 2 cut(s) 170, 171
ScrFI CCNGG 4 cut(s) 155, 228, 309, 374
SduI GDGCHC 4 cut(s) 10, 62, 174, 733
SetI ASST 6 cut(s) 62, 204, 543, 555, 733, 738
SfcI CTRYAG 3 cut(s) 88, 480, 615
SfuI TTCGAA 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SphI GCATGC 1 cut(s) 446
Sse9I AATT 2 cut(s) 165, 638
SsiI CCGC 1 cut(s) 672
SspMI CTAG 1 cut(s) 794
SstI GAGCTC 2 cut(s) 62, 733
StyD4I CCNGG 4 cut(s) 153, 226, 307, 372
TaaI ACNGT 5 cut(s) 97, 184, 319, 484, 781
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 457, 464
TasI AATT 2 cut(s) 165, 638
TatI WGTACW 2 cut(s) 179, 705
TfiI GAWTC 2 cut(s) 748, 774
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 46, 619, 786
TseI GCWGC 2 cut(s) 90, 213
TspDTI ATGAA 5 cut(s) 100, 395, 414, 623, 655
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 3 cut(s) 46, 619, 786
Van91I CCANNNNNTGG 1 cut(s) 592
VneI GTGCAC 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 760
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.