Rh2DG128000

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010213
Physical Location & Seq
Reverse (-)
10714556 .. 10720561
6006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG128000.1

Sequence Viewer

Length: 399 bp
ATGCGTGCCATTCAATTGGGCTTGACTTGGTTTTCGCCATTAACGCACATCAGTCTCTTTGCTTTGCTTTGGTGGCTCAGGCGACGACGAGGTGTGCTCAGAGTGTACTCAGAGAGCCCAGGAACACAAACAATGGTGAGAGGAAGCATTAAGGTTCTGAAAGATGCGGCCTCGGGGCTCAATAAGACCTTATACGAGAGACTCGTCTGCCCGCTTTCTAGGCAACCCCTGAGGTTCTGTGAGGAAACGAATTCTTTGATCAGTGATGCTATTGGTGTTTCGTATCCTATAAAGGATGGGATTCCTTGCTTAGTACCAGCGGATGGCAAGATGCTTGATACAGATGCAATAAAACGTGAAGAGGGTGGGGAATCCTCAGGCAAGAGGAAAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

132

Amino Acids

14.72

Weight (kDa)

9.51

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trm112p PF03966 62 - 100 1.1e-09 Trm112p-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 323
AciI CCGC 3 cut(s) 167, 212, 320
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 2 cut(s) 107, 315
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 59, 193
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 250
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 172
AxyI CCTNAGG 2 cut(s) 230, 376
BanII GRGCYC 2 cut(s) 119, 180
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 2 cut(s) 290, 317
BciT130I CCWGG 1 cut(s) 120
BciVI GTATCC 1 cut(s) 294
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 59, 193
BfaI CTAG 1 cut(s) 219
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 4 cut(s) 154, 256, 321, 334
BplI GAGNNNNNCTC 2 cut(s) 81, 113
Bpu10I CCTNAGC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 118, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse21I CCTNAGG 2 cut(s) 230, 376
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 118, 171
BseGI GGATG 2 cut(s) 301, 328
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 5 cut(s) 91, 112, 123, 221, 390
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 59, 193
BsnI GGCC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 3 cut(s) 99, 119, 180
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 3 cut(s) 167, 212, 320
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 5 cut(s) 90, 111, 122, 222, 389
BssECI CCNNGG 2 cut(s) 118, 171
BssMI GATC 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 6, 212
BstDEI CTNAG 6 cut(s) 77, 98, 109, 230, 310, 376
BstF5I GGATG 2 cut(s) 301, 328
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 59, 193
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 3 cut(s) 43, 73, 220
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 16
Bsu36I CCTNAGG 2 cut(s) 230, 376
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 301, 328
BtsIMutI CAGTG 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 6, 212
Csp6I GTAC 2 cut(s) 106, 314
CviJI RGCY 5 cut(s) 21, 76, 117, 170, 178
CviKI_1 RGCY 5 cut(s) 21, 76, 117, 170, 178
CviQI GTAC 2 cut(s) 106, 314
DdeI CTNAG 6 cut(s) 77, 98, 109, 230, 310, 376
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 119, 180
Eco81I CCTNAGG 2 cut(s) 230, 376
Eco88I CYCGRG 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 118
EcoT38I GRGCYC 2 cut(s) 119, 180
FaiI YATR 2 cut(s) 193, 290
FauI CCCGC 1 cut(s) 219
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 308, 335
FriOI GRGCYC 2 cut(s) 119, 180
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 170
HinfI GANTC 3 cut(s) 201, 301, 371
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 101, 112, 159
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 87, 90
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 73, 220
HpyF3I CTNAG 6 cut(s) 77, 98, 109, 230, 310, 376
HpySE526I ACGT 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 64, 105, 132, 242, 330, 363
LweI GCATC 4 cut(s) 154, 256, 321, 334
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 355
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 371
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 3 cut(s) 99, 119, 180
MluCI AATT 2 cut(s) 14, 250
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 8 cut(s) 83, 134, 181, 225, 235, 355, 378, 385
MseI TTAA 2 cut(s) 41, 150
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 43, 73, 220
NdeII GATC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 2 cut(s) 301, 371
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
RsaI GTAC 2 cut(s) 107, 315
RsaNI GTAC 2 cut(s) 106, 314
SaqAI TTAA 2 cut(s) 41, 150
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 258
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 3 cut(s) 99, 119, 180
SetI ASST 5 cut(s) 94, 156, 191, 236, 358
SfaNI GCATC 4 cut(s) 154, 256, 321, 334
Sse9I AATT 2 cut(s) 14, 250
SsiI CCGC 3 cut(s) 167, 212, 320
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 358
TasI AATT 2 cut(s) 14, 250
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 301, 371
Tru1I TTAA 2 cut(s) 41, 150
Tru9I TTAA 2 cut(s) 41, 150
TscAI CASTG 1 cut(s) 268
TspRI CASTG 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 323
XapI RAATTY 1 cut(s) 250
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.