Rroxscaffold_2G00143730

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010213
Physical Location & Seq
Forward (+)
81679351 .. 81680497
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143730.1

Sequence Viewer

Length: 267 bp
ATGGTGAGAGGAAGCATTAAGGTTCTGAAAGACGCGGTCTCTGGGCTCAATAAGACCCTATACGAGAGACTTGTCTGCCCGCTTTCTAGGCAACCCCTGAGGTTCTGTGAGGAAACGAATTCTTTGATCAGTGATGCTATTGGTGTTTCGTATCCTATAAAGGATGGGATTCCTTGCTTAGTACCAGCGGATGGCAAGATGCTTGATACAGATGCAATAAAACGTGAAGAGGGTGGGGAATCCTCAGGCAAGAGAGAAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

88

Amino Acids

9.55

Weight (kDa)

5.44

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trm112p PF03966 18 - 56 4.5e-10 Trm112p-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AccII CGCG 1 cut(s) 35
AciI CCGC 3 cut(s) 35, 80, 188
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 43, 61
ApoI RAATTY 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 2 cut(s) 98, 244
BanII GRGCYC 1 cut(s) 48
BccI CCATC 2 cut(s) 158, 185
BciVI GTATCC 1 cut(s) 162
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 43, 61
BfaI CTAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 162
BmsI GCATC 3 cut(s) 124, 189, 202
BsaI GGTCTC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse21I CCTNAGG 2 cut(s) 98, 244
BseGI GGATG 2 cut(s) 169, 196
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 89, 258
Bsh1236I CGCG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 43, 61
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 3 cut(s) 35, 80, 188
BspCNI CTCAG 2 cut(s) 90, 257
BspFNI CGCG 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 43
BssMI GATC 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 98, 178, 244
BstF5I GGATG 2 cut(s) 169, 196
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 2 cut(s) 43, 61
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstUI CGCG 1 cut(s) 35
Bsu36I CCTNAGG 2 cut(s) 98, 244
BsuI GTATCC 1 cut(s) 162
BtsCI GGATG 2 cut(s) 169, 196
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 80
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 1 cut(s) 46
CviKI_1 RGCY 1 cut(s) 46
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 3 cut(s) 98, 178, 244
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 43
Eco81I CCTNAGG 2 cut(s) 98, 244
EcoRI GAATTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 48
FaiI YATR 2 cut(s) 61, 158
FauI CCCGC 1 cut(s) 87
FbaI TGATCA 1 cut(s) 126
FokI GGATG 2 cut(s) 176, 203
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 1 cut(s) 87
HgaI GACGC 1 cut(s) 41
HinfI GANTC 2 cut(s) 169, 239
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 98, 178, 244
HpySE526I ACGT 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 27, 110, 198, 231
LweI GCATC 3 cut(s) 124, 189, 202
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 223
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 118
MnlI CCTC 4 cut(s) 93, 103, 223, 253
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 188
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 169, 239
PflFI GACNNNGTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 18
Sau3AI GATC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 24, 104, 226
SfaNI GCATC 3 cut(s) 124, 189, 202
Sse9I AATT 1 cut(s) 118
SsiI CCGC 3 cut(s) 35, 80, 188
SspMI CTAG 1 cut(s) 87
TaiI ACGT 1 cut(s) 226
TasI AATT 1 cut(s) 118
TfiI GAWTC 2 cut(s) 169, 239
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 136
TspRI CASTG 1 cut(s) 136
Tth111I GACNNNGTC 1 cut(s) 35
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 118
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.