FvH4_1g11290

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010213
Physical Location & Seq
Reverse (-)
6153383 .. 6155056
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11290.t1

Sequence Viewer

Length: 207 bp
ATGGCTTCGAGAAGCATGAAGGTTCTGAAAGATGCGGCGTCTGGGCTCAACAAGACGCTATACGAGAGACTCGTCTGCCCACTTTCTAGGCAACCCTTGAGGTTCTGTGAGGAAACGAATTCTTTGATCAGTGATGCTATTGGTGTTTCCTATCCTTTGCAAGTGAGATACTTGAGGCATTGTGTTCGGCTTTTCAGCTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

69

Amino Acids

7.79

Weight (kDa)

9.57

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trm112p PF03966 18 - 52 5.2e-07 Trm112p-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 38
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 118
BanII GRGCYC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmsI GCATC 2 cut(s) 22, 124
BpuEI CTTGAG 2 cut(s) 118, 193
BsaHI GRCGYC 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 35
BssMI GATC 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 38
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 136
CseI GACGC 2 cut(s) 27, 64
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 5, 46, 190, 198
CviKI_1 RGCY 4 cut(s) 5, 46, 190, 198
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 19
FaiI YATR 2 cut(s) 17, 61
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 36
HgaI GACGC 2 cut(s) 27, 64
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 1 cut(s) 19
HinfI GANTC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 1 cut(s) 27
LweI GCATC 2 cut(s) 22, 124
MaeI CTAG 1 cut(s) 87
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 3 cut(s) 93, 103, 168
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 126
SchI GAGTC 1 cut(s) 63
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 24, 104, 200
SfaNI GCATC 2 cut(s) 22, 124
SmlI CTYRAG 2 cut(s) 97, 172
SmoI CTYRAG 2 cut(s) 97, 172
Sse9I AATT 1 cut(s) 118
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 87
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 118
TauI GCSGC 1 cut(s) 38
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 136
XapI RAATTY 1 cut(s) 118
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.