Rorug02G0074700

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010213
Physical Location & Seq
Forward (+)
5929398 .. 5931279
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0074700.1

Sequence Viewer

Length: 1047 bp
ATGGGCAGAAAGTGCTCACATTGTGGAAACATGGGCCATAATTCAAGGACCTGTACAAATTTCAGAGGCAGTTCCACTGCTGGTTTTGTTGGTACTACTCCTCATGGATTCAGGCTCTTCGGTGTTCAAGTTCATCATCATGATCATATGTCATCTTCAGTATCTTCTTTTAATGCCATGGACATGATGATGAAGAAAAGCTTTAGCATGGATTGCTTGCCCACATCTTCAGCCTCATCATCATCCCCATCTTCTTCAAGGATATCCATTGATAATGAAAATTCTGATCATCACAAAGCCTCCATCGGTTATGTCTCTGATGGCCTCATATGTCGTGCCCAAGACAGGAAAAAGGGAGTTCCGTGGACAGAAGAGGAGCACAGAACATTTCTGATGGGGCTTGAGAAGTTAGGGAAGGGGGACTGGAGAGGAATCTCTAGGAACTATGTGACCACAAGAACACCAACTCAAGTTGCTAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAACCCTCACCAAGAAGAAGCGTCGTTCAAGCCTCTTCGATATGTTTGGGAGCAATAGCCGTAATCCACAATCCCAGCCAAGTAGTATCGATCAAGCTCATTGTGTTAACAATATTCCAACAACCCCACAAAGTCAAAGTAATATTCAGCTTCAACTTAGTACTACTACTACCTCAGCAGCCCAAAATCTAAAACCATCAGTTCATCAGCAAAAACCAGCTGACTACAGCAGTTCTACTCCTCCTTTAGGCAGTATACATGATCATGATCGTGCTCCTGATCGCGCTATGCCTGGATGGATTTACGGGTTGATCGATTCCCAGCTGAAATATTCAAATGCAGCTTCATCATCAAAACCCAGCACTAGTAATATTCCACCACCACCACCATCACCATCATCAGTAGTACCAGATCATCTAGAGCTGACGCTCGCTGCGCCGGTTGTTAGGCCTTTGGATTTGGATCAAAATAGATCGTCGTCGTCGTCATCCCCGACATCTGGTCCTCTCCTCAATATTGGACCTATTAGTGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

348

Amino Acids

37.78

Weight (kDa)

9.51

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 120 - 166 1.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 763
AccII CGCG 1 cut(s) 792
AclWI GGATC 1 cut(s) 978
AcsI RAATTY 2 cut(s) 58, 280
AcuI CTGAAG 2 cut(s) 141, 213
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 4 cut(s) 55, 94, 670, 915
AfiI CCNNNNNNNGG 3 cut(s) 345, 755, 1007
AgsI TTSAA 6 cut(s) 45, 128, 258, 537, 662, 843
AhdI GACNNNNNGTC 1 cut(s) 1008
AhlI ACTAGT 1 cut(s) 872
AjnI CCWGG 1 cut(s) 799
AluBI AGCT 7 cut(s) 201, 605, 658, 728, 832, 851, 931
AluI AGCT 7 cut(s) 201, 605, 658, 728, 832, 851, 931
Alw21I GWGCWC 3 cut(s) 17, 381, 784
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 978
AoxI GGCC 3 cut(s) 34, 322, 956
ApeKI GCWGC 3 cut(s) 686, 848, 941
ApoI RAATTY 2 cut(s) 58, 280
AspLEI GCGC 2 cut(s) 794, 946
AspS9I GGNCC 4 cut(s) 34, 48, 1010, 1028
AsuHPI GGTGA 2 cut(s) 508, 891
AvaII GGWCC 3 cut(s) 48, 1010, 1028
BaeGI GKGCMC 1 cut(s) 340
Bbv12I GWGCWC 3 cut(s) 17, 381, 784
BbvCI CCTCAGC 1 cut(s) 682
BbvI GCAGC 3 cut(s) 698, 860, 928
BccI CCATC 8 cut(s) 256, 311, 314, 388, 712, 798, 904, 910
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 1 cut(s) 801
BclI TGATCA 3 cut(s) 142, 286, 769
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 4 cut(s) 438, 477, 873, 926
BfmI CTRYAG 1 cut(s) 733
BisI GCNGC 3 cut(s) 687, 849, 942
BlsI GCNGC 3 cut(s) 688, 850, 943
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 801
Bme18I GGWCC 3 cut(s) 48, 1010, 1028
BmeRI GACNNNNNGTC 1 cut(s) 1008
BmgT120I GGNCC 4 cut(s) 34, 48, 1010, 1028
BmrFI CCNGG 1 cut(s) 801
BpmI CTGGAG 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 682
BpuEI CTTGAG 2 cut(s) 422, 453
Bsa29I ATCGAT 2 cut(s) 597, 822
BsaBI GATNNNNATC 2 cut(s) 774, 969
BsaJI CCNNGG 2 cut(s) 177, 362
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 345, 755, 1007
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 1 cut(s) 428
Bse8I GATNNNNATC 2 cut(s) 774, 969
BseBI CCWGG 1 cut(s) 801
BseCI ATCGAT 2 cut(s) 597, 822
BseDI CCNNGG 2 cut(s) 177, 362
BseGI GGATG 3 cut(s) 242, 809, 995
BseJI GATNNNNATC 2 cut(s) 774, 969
BseLI CCNNNNNNNGG 3 cut(s) 345, 755, 1007
BseMII CTCAG 3 cut(s) 500, 514, 696
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 4 cut(s) 90, 389, 738, 1007
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 698, 860, 928
BseYI CCCAGC 3 cut(s) 582, 828, 866
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 3 cut(s) 36, 324, 958
BshVI ATCGAT 2 cut(s) 597, 822
BsiHKAI GWGCWC 3 cut(s) 17, 381, 784
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 3 cut(s) 345, 755, 1007
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 3 cut(s) 36, 324, 958
Bsp1286I GDGCHC 4 cut(s) 17, 340, 381, 784
Bsp1407I TGTACA 1 cut(s) 53
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 3 cut(s) 36, 324, 958
BspCNI CTCAG 3 cut(s) 499, 513, 695
BspDI ATCGAT 2 cut(s) 597, 822
BspFNI CGCG 1 cut(s) 792
BspHI TCATGA 2 cut(s) 139, 772
BspPI GGATC 1 cut(s) 978
BspQI GCTCTTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 946
BsrGI TGTACA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 2 cut(s) 177, 362
BssNAI GTATAC 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 801
Bst6I CTCTTC 3 cut(s) 122, 366, 548
BstAPI GCANNNNNTGC 2 cut(s) 12, 213
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 218, 507, 939
BstDEI CTNAG 4 cut(s) 486, 500, 665, 682
BstDSI CCRYGG 2 cut(s) 177, 362
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 3 cut(s) 242, 809, 995
BstFNI CGCG 1 cut(s) 792
BstHHI GCGC 2 cut(s) 794, 946
BstMAI GTCTC 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 12, 213, 482, 943
BstNI CCWGG 1 cut(s) 801
BstSCI CCNGG 1 cut(s) 799
BstSFI CTRYAG 1 cut(s) 733
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 3 cut(s) 698, 860, 928
BstZ17I GTATAC 1 cut(s) 764
Bsu15I ATCGAT 2 cut(s) 597, 822
BsuRI GGCC 3 cut(s) 36, 324, 958
BsuTUI ATCGAT 2 cut(s) 597, 822
BtgI CCRYGG 2 cut(s) 177, 362
BtsCI GGATG 3 cut(s) 242, 809, 995
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 218, 507, 939
CciI TCATGA 2 cut(s) 139, 772
CfoI GCGC 2 cut(s) 794, 946
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 4 cut(s) 34, 48, 1010, 1028
ClaI ATCGAT 2 cut(s) 597, 822
CseI GACGC 2 cut(s) 518, 943
Csp6I GTAC 4 cut(s) 54, 93, 669, 914
CviAII CATG 9 cut(s) 31, 104, 140, 178, 184, 208, 482, 767, 773
CviQI GTAC 4 cut(s) 54, 93, 669, 914
DdeI CTNAG 4 cut(s) 486, 500, 665, 682
DraIII CACNNNGTG 1 cut(s) 23
DriI GACNNNNNGTC 1 cut(s) 1008
Eam1104I CTCTTC 3 cut(s) 122, 366, 548
Eam1105I GACNNNNNGTC 1 cut(s) 1008
EarI CTCTTC 3 cut(s) 122, 366, 548
Eco130I CCWWGG 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 958
Eco32I GATATC 1 cut(s) 264
Eco47I GGWCC 3 cut(s) 48, 1010, 1028
Eco57I CTGAAG 2 cut(s) 141, 213
EcoNI CCTNNNNNAGG 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 799
EcoRV GATATC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 1 cut(s) 434
FatI CATG 9 cut(s) 30, 103, 139, 177, 183, 207, 481, 766, 772
FauNDI CATATG 2 cut(s) 147, 329
FbaI TGATCA 3 cut(s) 142, 286, 769
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 3 cut(s) 687, 849, 942
FokI GGATG 3 cut(s) 229, 816, 982
Fsp4HI GCNGC 3 cut(s) 687, 849, 942
FspBI CTAG 4 cut(s) 438, 477, 873, 926
GlaI GCGC 2 cut(s) 793, 945
GluI GCNGC 3 cut(s) 687, 849, 942
GsaI CCCAGC 3 cut(s) 586, 832, 870
GsuI CTGGAG 1 cut(s) 445
HaeIII GGCC 3 cut(s) 36, 324, 958
HapII CCGG 1 cut(s) 947
HgaI GACGC 2 cut(s) 518, 943
HhaI GCGC 2 cut(s) 794, 946
Hin1II CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
Hin6I GCGC 2 cut(s) 792, 944
HinP1I GCGC 2 cut(s) 792, 944
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 3 cut(s) 108, 432, 824
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 1 cut(s) 947
HphI GGTGA 2 cut(s) 508, 891
Hpy166II GTNNAC 3 cut(s) 366, 616, 764
Hpy188I TCNGA 5 cut(s) 65, 286, 319, 393, 489
Hpy188III TCNNGA 4 cut(s) 140, 773, 785, 926
Hpy8I GTNNAC 3 cut(s) 366, 616, 764
Hpy99I CGWCG 4 cut(s) 534, 988, 991, 994
HpyAV CCTTC 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 848
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 213, 482, 943
HpyF3I CTNAG 4 cut(s) 486, 500, 665, 682
Hsp92II CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
HspAI GCGC 2 cut(s) 792, 944
Ksp22I TGATCA 3 cut(s) 142, 286, 769
KspAI GTTAAC 1 cut(s) 616
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 376, 558, 787
Lsp1109I GCAGC 3 cut(s) 698, 860, 928
MaeI CTAG 4 cut(s) 438, 477, 873, 926
MaeIII GTNAC 2 cut(s) 448, 1039
MhlI GDGCHC 4 cut(s) 17, 340, 381, 784
MluCI AATT 3 cut(s) 40, 58, 280
MmeI TCCRAC 1 cut(s) 650
MseI TTAA 2 cut(s) 171, 615
MslI CAYNNNNRTG 5 cut(s) 138, 182, 188, 771, 777
MspA1I CMGCKG 2 cut(s) 728, 832
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 1 cut(s) 801
MvaI CCWGG 1 cut(s) 801
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 4 cut(s) 12, 213, 482, 943
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 2 cut(s) 147, 329
NlaIII CATG 9 cut(s) 34, 107, 143, 181, 187, 211, 485, 770, 776
NmuCI GTSAC 1 cut(s) 448
PagI TCATGA 2 cut(s) 139, 772
PceI AGGCCT 1 cut(s) 958
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 3 cut(s) 819, 989, 998
PfeI GAWTC 3 cut(s) 108, 432, 824
PkrI GCNGC 3 cut(s) 688, 850, 943
PpuMI RGGWCCY 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 799
PspFI CCCAGC 3 cut(s) 582, 828, 866
PspGI CCWGG 1 cut(s) 799
PspPI GGNCC 4 cut(s) 34, 48, 1010, 1028
PspPPI RGGWCCY 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 728, 832
RsaI GTAC 4 cut(s) 55, 94, 670, 915
RsaNI GTAC 4 cut(s) 54, 93, 669, 914
RseI CAYNNNNRTG 5 cut(s) 138, 182, 188, 771, 777
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 171, 615
SatI GCNGC 3 cut(s) 687, 849, 942
Sau96I GGNCC 4 cut(s) 34, 48, 1010, 1028
ScaI AGTACT 1 cut(s) 670
ScrFI CCNGG 1 cut(s) 801
SduI GDGCHC 4 cut(s) 17, 340, 381, 784
SfcI CTRYAG 1 cut(s) 733
SinI GGWCC 3 cut(s) 48, 1010, 1028
SmiMI CAYNNNNRTG 5 cut(s) 138, 182, 188, 771, 777
SmlI CTYRAG 2 cut(s) 401, 468
SmoI CTYRAG 2 cut(s) 401, 468
SpeI ACTAGT 1 cut(s) 872
Sse9I AATT 3 cut(s) 40, 58, 280
SseBI AGGCCT 1 cut(s) 958
SspI AATATT 5 cut(s) 622, 652, 839, 880, 1024
SspMI CTAG 4 cut(s) 438, 477, 873, 926
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 1 cut(s) 799
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 3 cut(s) 546, 597, 822
TasI AATT 3 cut(s) 40, 58, 280
TatI WGTACW 2 cut(s) 53, 668
TfiI GAWTC 3 cut(s) 108, 432, 824
Tru1I TTAA 2 cut(s) 171, 615
Tru9I TTAA 2 cut(s) 171, 615
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 3 cut(s) 686, 848, 941
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 5 cut(s) 122, 206, 291, 701, 843
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 3 cut(s) 48, 1010, 1028
XagI CCTNNNNNAGG 1 cut(s) 753
XapI RAATTY 2 cut(s) 58, 280
XbaI TCTAGA 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 763
XspI CTAG 4 cut(s) 438, 477, 873, 926
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.