AT4G35905

Trm112p-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010213
Physical Location & Seq
Reverse (-)
17006641 .. 17008266
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35905.1

Sequence Viewer

Length: 234 bp
ATGGTGAGACTAAACAGAGTGCTGCTAAAAGACGCCGGCAATGTAATTGACAAGACCCTCTCCGAGATTCTGGTGTGCCCTCTCTCTAAGCAACCTCTGAGGTTTTGCGAGAAGACGAAATCACTTGTCAGCGATACTATTGGTGTCTCTTTTCCTATCAAAGATGGGATTCCATGCTTGGTTCCAAAGGATGGAAAAATACTTGAGGAGGAAGGTGATGCATCAAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

7.68

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trm112p PF03966 17 - 56 2.6e-11 Trm112p-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 191
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 16, 227
BaeGI GKGCMC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 9
BccI CCATC 2 cut(s) 158, 185
BcoDI GTCTC 1 cut(s) 151
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 2 cut(s) 208, 230
BpiI GAAGAC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 46
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssNI GRCGYC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 87, 98
BstF5I GGATG 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 35
CseI GACGC 1 cut(s) 41
CviAII CATG 1 cut(s) 174
CviJI RGCY 1 cut(s) 230
CviKI_1 RGCY 1 cut(s) 230
DdeI CTNAG 2 cut(s) 87, 98
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 1 cut(s) 177
FaiI YATR 1 cut(s) 175
FatI CATG 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
HapII CCGG 1 cut(s) 36
HgaI GACGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 2 cut(s) 67, 169
HpaII CCGG 1 cut(s) 36
HphI GGTGA 2 cut(s) 16, 227
Hpy188I TCNGA 2 cut(s) 64, 99
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 87, 98
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 177
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
LpnPI CCDG 2 cut(s) 49, 56
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 2 cut(s) 208, 230
MboII GAAGA 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 1 cut(s) 45
MnlI CCTC 6 cut(s) 68, 90, 93, 105, 199, 202
Mph1103I ATGCAT 1 cut(s) 223
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 1 cut(s) 232
MspI CCGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 227
NaeI GCCGGC 1 cut(s) 37
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 67, 169
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 232
SatI GCNGC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 80
SetI ASST 4 cut(s) 97, 104, 217, 232
SfaNI GCATC 2 cut(s) 208, 230
SgeI CNNG 9 cut(s) 48, 64, 76, 83, 121, 137, 186, 190, 215
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 45
TasI AATT 1 cut(s) 45
TfiI GAWTC 2 cut(s) 67, 169
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TseI GCWGC 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.