MD15G1241100.v1.1

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0010213
Physical Location & Seq
Reverse (-)
19857905 .. 19859296
1392 bp
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UTR
Exon/CDS
Intron
MD15G1241100.v1.1.491

Sequence Viewer

Length: 285 bp
ATGGTGAGAGGAAGCATAAAGCTTCTTAAGGATGCTGGGTCTGGACTCAGCAAAACCCTAGCTGACATACTCGTCTGCCCACTTTCTAAGCAACCTCTAAGGTTTTGCGAGCAAACAAATTCCCTAATTAGTGATGCAATCGGTGTTTCCTTTCCTATAAAGGATGGGATACCTAGCTTAGTACCAACAGATGGCAAGACACTCGAGGCGGATGAGACAATAAAAACTGAAGATTCTGAAGAATCATCAGACAAGCACGAAGCAGATGGAATAGGCAGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

95

Amino Acids

9.95

Weight (kDa)

4.72

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trm112p PF03966 18 - 56 4e-11 Trm112p-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 191
AciI CCGC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 249, 258
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 191
AflII CTTAAG 1 cut(s) 26
AluBI AGCT 3 cut(s) 22, 62, 177
AluI AGCT 3 cut(s) 22, 62, 177
Alw26I GTCTC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 203
ApoI RAATTY 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 203
BccI CCATC 3 cut(s) 158, 185, 260
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciVI GTATCC 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 3 cut(s) 59, 174, 283
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 203
BmsI GCATC 2 cut(s) 22, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseGI GGATG 3 cut(s) 37, 169, 217
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 203
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 26
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 4 cut(s) 47, 87, 98, 178
BstF5I GGATG 3 cut(s) 37, 169, 217
BstMAI GTCTC 1 cut(s) 209
BsuI GTATCC 1 cut(s) 162
BtsCI GGATG 3 cut(s) 37, 169, 217
Cac8I GCNNGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 3 cut(s) 22, 62, 177
CviKI_1 RGCY 3 cut(s) 22, 62, 177
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 4 cut(s) 47, 87, 98, 178
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 249, 258
Eco88I CYCGRG 1 cut(s) 203
FaiI YATR 3 cut(s) 17, 68, 158
FokI GGATG 3 cut(s) 44, 176, 224
FspBI CTAG 3 cut(s) 59, 174, 283
GsaI CCCAGC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 45, 233, 242
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 238, 250
Hpy188III TCNNGA 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 137
HpyF3I CTNAG 4 cut(s) 47, 87, 98, 178
LpnPI CCDG 2 cut(s) 21, 27
LweI GCATC 2 cut(s) 22, 124
MaeI CTAG 3 cut(s) 59, 174, 283
MaeIII GTNAC 1 cut(s) 278
MboII GAAGA 2 cut(s) 242, 251
MluCI AATT 2 cut(s) 118, 126
MlyI GAGTC 1 cut(s) 39
MnlI CCTC 2 cut(s) 105, 199
MseI TTAA 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 203
PfeI GAWTC 2 cut(s) 233, 242
PflMI CCANNNNNTGG 1 cut(s) 191
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 35
PspXI VCTCGAGB 1 cut(s) 203
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 27
SchI GAGTC 1 cut(s) 39
SetI ASST 6 cut(s) 24, 64, 97, 104, 175, 179
SfaNI GCATC 2 cut(s) 22, 124
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 26, 203
SmoI CTYRAG 2 cut(s) 26, 203
Sse9I AATT 2 cut(s) 118, 126
SsiI CCGC 1 cut(s) 209
SspMI CTAG 3 cut(s) 59, 174, 283
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 118, 126
TfiI GAWTC 2 cut(s) 233, 242
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 26
XapI RAATTY 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 3 cut(s) 59, 174, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.