Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002776.1

Orthogroup ID

OG0010213

Physical Location & Seq

Genomic Coordinates Reverse (-)

148429 .. 150322

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002776.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgcgcgccattcaattgggcttgacttggttttcgccattaacgcacatcagtctctctgctttggtggctcaggcgacgacgaggtgtgctcagagtactcagagagctcaggagtcaggagcaccaaaaatggtgagaggaagcattaaggttctgaaagatgcggcctctgggctcaataagaccctatacgacagacttgtctgcccgctttctaggcaacccctgaggttctgtgaggaaacgaattctttgatcagtgatgctattggtgtttcgtatcctataaaggatgggattccttgcttagtaccagcggatggcaagatgcttgatacggatgcaataaaacgtgaagagggacctgaacaccaagcattttgcaaggaagccttaaagcatgcatctaggggtgatagagccattagcttgtctgattctcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

149

Amino Acids

16.2

Weight (kDa)

8.9

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35905
fragaria_vesca	FvH4_1g11290 FvH4_1g11290 FvH4_1g11290
malus_domestica	MD15G1241100.v1.1
prunus_persica	Prupe.7G172900_v2.0.a1 Prupe.7G173100_v2.0.a1 Prupe.7G173100_v2.0.a1
pyrus_communis	pycom02g09780 pycom15g21260
rosa_chinensis	RchiOBHm_Chr2g0098761
rosa_multiflora	Rmu_sc0002776.1_g000031
rosa_roxburghii	Rroxscaffold_2G00143730
rosa_rugosa	Rorug02G0074600 Rorug02G0074600 Rorug02G0074700
rosa_samantha	Rh2AG122300 Rh2BG126000 Rh2CG126900 Rh2DG128000
rosa_wichuraiana	Rw0G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccII	CGCG	1 cut(s)	6
AciI	CCGC	3 cut(s)	167, 212, 320
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	2 cut(s)	100, 315
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	2 cut(s)	110, 432
AluI	AGCT	2 cut(s)	110, 432
Alw21I	GWGCWC	3 cut(s)	94, 112, 127
Alw26I	GTCTC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	250
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	148, 428
AvaII	GGWCC	1 cut(s)	365
AxyI	CCTNAGG	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	112, 180
Bbv12I	GWGCWC	3 cut(s)	94, 112, 127
BccI	CCATC	2 cut(s)	290, 317
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	219, 411
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	366
BmsI	GCATC	5 cut(s)	154, 256, 321, 334, 416
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
Bpu10I	CCTNAGC	2 cut(s)	72, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse21I	CCTNAGG	1 cut(s)	230
BseGI	GGATG	3 cut(s)	301, 328, 349
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	5 cut(s)	86, 107, 116, 125, 221
BsePI	GCGCGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	170
BsiHKAI	GWGCWC	3 cut(s)	94, 112, 127
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	4 cut(s)	94, 112, 127, 180
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	167, 212, 320
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	5 cut(s)	85, 106, 115, 124, 222
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	366
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	6, 212, 405
BstDEI	CTNAG	6 cut(s)	72, 93, 102, 111, 230, 310
BstF5I	GGATG	3 cut(s)	301, 328, 349
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 68, 220
BstNSI	RCATGY	1 cut(s)	407
BstUI	CGCG	1 cut(s)	6
BstXI	CCANNNNNNTGG	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	3 cut(s)	301, 328, 349
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	6, 212, 405
CfoI	GCGC	2 cut(s)	6, 8
Cfr13I	GGNCC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	99, 314
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	8 cut(s)	21, 71, 110, 170, 178, 395, 425, 432
CviKI_1	RGCY	8 cut(s)	21, 71, 110, 170, 178, 395, 425, 432
CviQI	GTAC	2 cut(s)	99, 314
DdeI	CTNAG	6 cut(s)	72, 93, 102, 111, 230, 310
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	110
Eco24I	GRGCYC	2 cut(s)	112, 180
Eco47I	GGWCC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	112, 180
FaeI	CATG	1 cut(s)	407
FaiI	YATR	3 cut(s)	193, 290, 405
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	3 cut(s)	308, 335, 356
FriOI	GRGCYC	2 cut(s)	112, 180
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	219, 411
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	6, 8
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HinfI	GANTC	3 cut(s)	116, 301, 440
HphI	GGTGA	2 cut(s)	148, 428
Hpy188I	TCNGA	4 cut(s)	96, 105, 159, 439
Hpy188III	TCNNGA	2 cut(s)	113, 120
Hpy99I	CGWCG	2 cut(s)	82, 85
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	3 cut(s)	347, 387, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 68, 220
HpyF3I	CTNAG	6 cut(s)	72, 93, 102, 111, 230, 310
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	2 cut(s)	4, 6
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	7 cut(s)	59, 98, 105, 159, 242, 330, 381
LweI	GCATC	5 cut(s)	154, 256, 321, 334, 416
MaeI	CTAG	2 cut(s)	219, 411
MaeII	ACGT	1 cut(s)	355
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	371
MfeI	CAATTG	1 cut(s)	14
MhlI	GDGCHC	4 cut(s)	94, 112, 127, 180
MluCI	AATT	2 cut(s)	14, 250
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	6 cut(s)	78, 134, 181, 225, 235, 355
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	3 cut(s)	41, 150, 398
MspA1I	CMGCKG	1 cut(s)	320
MunI	CAATTG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	43, 68, 220
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	366
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	407
PaeI	GCATGC	1 cut(s)	407
PauI	GCGCGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	301, 440
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PteI	GCGCGC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	100, 315
RsaNI	GTAC	2 cut(s)	99, 314
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	41, 150, 398
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	365
ScaI	AGTACT	1 cut(s)	100
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	4 cut(s)	94, 112, 127, 180
SetI	ASST	7 cut(s)	89, 112, 156, 236, 358, 370, 434
SfaNI	GCATC	5 cut(s)	154, 256, 321, 334, 416
SinI	GGWCC	1 cut(s)	365
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	2 cut(s)	14, 250
SsiI	CCGC	3 cut(s)	167, 212, 320
SspMI	CTAG	2 cut(s)	219, 411
SstI	GAGCTC	1 cut(s)	112
TaiI	ACGT	1 cut(s)	358
TasI	AATT	2 cut(s)	14, 250
TatI	WGTACW	1 cut(s)	98
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	301, 440
Tru1I	TTAA	3 cut(s)	41, 150, 398
Tru9I	TTAA	3 cut(s)	41, 150, 398
TscAI	CASTG	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	407
XspI	CTAG	2 cut(s)	219, 411
ZrmI	AGTACT	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.