Rw0G004240

Protein preY, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00162
OG0010213
Physical Location & Seq
Reverse (-)
143286 .. 144056
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004240.1

Sequence Viewer

Length: 267 bp
ATGGTGAGAGGAAGCATTAAGGTTCTGAAAGATGCGGCCTCTGGGCTCAATAAGACCCTATACGACAGACTTGTCTGCCCGCTTTCTAGGCAACCCCTGAGGTTCTGTGAGGAAACGAATTCTTTGATCAGTGATGCTATTGGTGTTTCGTATCCTATAAAGGATGGGATTCCTTGCTTAGTACCAGCGGATGGCAAGATGCTTGATACGGATGCAATAAAACGTGAAGAGGGTGGGGAATCCTCAGGCAAGAGGGAAGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trm112p

Protein Analysis

88

Amino Acids

9.51

Weight (kDa)

5.42

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trm112p PF03966 18 - 56 7e-10 Trm112p-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 191
AciI CCGC 3 cut(s) 35, 80, 188
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 191
AoxI GGCC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 2 cut(s) 98, 244
BanII GRGCYC 1 cut(s) 48
BccI CCATC 2 cut(s) 158, 185
BciVI GTATCC 1 cut(s) 162
BclI TGATCA 1 cut(s) 126
BfaI CTAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 162
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmsI GCATC 4 cut(s) 22, 124, 189, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse21I CCTNAGG 2 cut(s) 98, 244
BseGI GGATG 3 cut(s) 169, 196, 217
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 2 cut(s) 89, 258
BshFI GGCC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 3 cut(s) 35, 80, 188
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 90, 257
BssMI GATC 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 98, 178, 244
BstF5I GGATG 3 cut(s) 169, 196, 217
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 88
Bsu36I CCTNAGG 2 cut(s) 98, 244
BsuI GTATCC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 3 cut(s) 169, 196, 217
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 2 cut(s) 38, 46
CviKI_1 RGCY 2 cut(s) 38, 46
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 3 cut(s) 98, 178, 244
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 48
Eco81I CCTNAGG 2 cut(s) 98, 244
EcoRI GAATTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 48
FaiI YATR 2 cut(s) 61, 158
FauI CCCGC 1 cut(s) 87
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 3 cut(s) 176, 203, 224
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 38
HinfI GANTC 2 cut(s) 169, 239
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 98, 178, 244
HpySE526I ACGT 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 4 cut(s) 27, 110, 198, 231
LweI GCATC 4 cut(s) 22, 124, 189, 202
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 223
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 239
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 118
MnlI CCTC 6 cut(s) 49, 93, 103, 223, 246, 253
MseI TTAA 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 169, 239
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 37
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 48
SetI ASST 3 cut(s) 24, 104, 226
SfaNI GCATC 4 cut(s) 22, 124, 189, 202
Sse9I AATT 1 cut(s) 118
SsiI CCGC 3 cut(s) 35, 80, 188
SspMI CTAG 1 cut(s) 87
TaiI ACGT 1 cut(s) 226
TasI AATT 1 cut(s) 118
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 169, 239
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 118
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.