Ring finger domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51325 |
| fragaria_vesca | FvH4_1g11280 |
| malus_domestica | MD02G1125300.v1.1 MD15G1241000.v1.1 |
| prunus_persica | Prupe.7G173200_v2.0.a1 |
| pyrus_communis | pycom15g21250 |
| rosa_chinensis | RchiOBHm_Chr2g0098751 |
| rosa_laevigata | RLG00000016825 |
| rosa_roxburghii | Rroxscaffold_2G00143740 |
| rosa_rugosa | Rorug02G0074600 |
| rosa_samantha | Rh2AG122200 Rh2BG125900 Rh2CG126800 Rh2DG127900 |
| rosa_wichuraiana | Rw0G004230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 140, 299 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 313, 320 |
| AgsI | TTSAA | 1 cut(s) | 209 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 257, 289 |
| AluBI | AGCT | 1 cut(s) | 162 |
| AluI | AGCT | 1 cut(s) | 162 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| Alw26I | GTCTC | 2 cut(s) | 150, 339 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 257, 289 |
| AspS9I | GGNCC | 1 cut(s) | 44 |
| AsuC2I | CCSGG | 1 cut(s) | 59 |
| AsuHPI | GGTGA | 2 cut(s) | 224, 338 |
| AvaII | GGWCC | 1 cut(s) | 44 |
| BaeGI | GKGCMC | 1 cut(s) | 299 |
| BauI | CACGAG | 2 cut(s) | 89, 242 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BccI | CCATC | 1 cut(s) | 96 |
| BcnI | CCSGG | 1 cut(s) | 59 |
| BcoDI | GTCTC | 2 cut(s) | 150, 339 |
| BfaI | CTAG | 1 cut(s) | 33 |
| Bme1390I | CCNGG | 1 cut(s) | 59 |
| Bme18I | GGWCC | 1 cut(s) | 44 |
| BmgT120I | GGNCC | 1 cut(s) | 44 |
| BmiI | GGNNCC | 1 cut(s) | 45 |
| BmrFI | CCNGG | 1 cut(s) | 59 |
| BmsI | GCATC | 1 cut(s) | 268 |
| BpuEI | CTTGAG | 2 cut(s) | 132, 184 |
| BpuMI | CCSGG | 1 cut(s) | 59 |
| BsaWI | WCCGGW | 1 cut(s) | 313 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 353, 383 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 313, 320 |
| Bse118I | RCCGGY | 1 cut(s) | 306 |
| BseGI | GGATG | 2 cut(s) | 107, 112 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 313, 320 |
| BseMII | CTCAG | 2 cut(s) | 348, 350 |
| BseRI | GAGGAG | 2 cut(s) | 336, 374 |
| BseSI | GKGCMC | 1 cut(s) | 299 |
| BsgI | GTGCAG | 1 cut(s) | 224 |
| Bsh1285I | CGRYCG | 2 cut(s) | 66, 99 |
| BsiEI | CGRYCG | 2 cut(s) | 66, 99 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BsiSI | CCGG | 3 cut(s) | 59, 307, 314 |
| BslFI | GGGAC | 1 cut(s) | 127 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 313, 320 |
| BsmAI | GTCTC | 2 cut(s) | 150, 339 |
| BsmFI | GGGAC | 1 cut(s) | 127 |
| Bsp1286I | GDGCHC | 2 cut(s) | 57, 299 |
| Bsp143I | GATC | 3 cut(s) | 27, 63, 96 |
| BspACI | CCGC | 2 cut(s) | 140, 299 |
| BspCNI | CTCAG | 2 cut(s) | 349, 349 |
| BspLI | GGNNCC | 1 cut(s) | 45 |
| BsrFI | RCCGGY | 1 cut(s) | 306 |
| BssAI | RCCGGY | 1 cut(s) | 306 |
| BssMI | GATC | 3 cut(s) | 27, 63, 96 |
| BssSI | CACGAG | 2 cut(s) | 89, 242 |
| Bst2BI | CACGAG | 2 cut(s) | 89, 242 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstC8I | GCNNGC | 3 cut(s) | 239, 283, 299 |
| BstDEI | CTNAG | 2 cut(s) | 336, 357 |
| BstF5I | GGATG | 2 cut(s) | 107, 112 |
| BstKTI | GATC | 3 cut(s) | 30, 66, 99 |
| BstMAI | GTCTC | 2 cut(s) | 150, 339 |
| BstMBI | GATC | 3 cut(s) | 27, 63, 96 |
| BstMCI | CGRYCG | 2 cut(s) | 66, 99 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 303 |
| BstNSI | RCATGY | 1 cut(s) | 285 |
| BstSCI | CCNGG | 1 cut(s) | 57 |
| BstSLI | GKGCMC | 1 cut(s) | 299 |
| BtsCI | GGATG | 2 cut(s) | 107, 112 |
| Cac8I | GCNNGC | 3 cut(s) | 239, 283, 299 |
| Cfr10I | RCCGGY | 1 cut(s) | 306 |
| Cfr13I | GGNCC | 1 cut(s) | 44 |
| CviAII | CATG | 3 cut(s) | 220, 234, 282 |
| CviJI | RGCY | 1 cut(s) | 162 |
| CviKI_1 | RGCY | 1 cut(s) | 162 |
| DdeI | CTNAG | 2 cut(s) | 336, 357 |
| DpnI | GATC | 3 cut(s) | 29, 65, 98 |
| DpnII | GATC | 3 cut(s) | 27, 63, 96 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| EciI | GGCGGA | 1 cut(s) | 155 |
| Eco47I | GGWCC | 1 cut(s) | 44 |
| EcoT22I | ATGCAT | 1 cut(s) | 283 |
| FaeI | CATG | 3 cut(s) | 223, 237, 285 |
| FaiI | YATR | 6 cut(s) | 221, 235, 259, 283, 368, 390 |
| FaqI | GGGAC | 1 cut(s) | 127 |
| FatI | CATG | 3 cut(s) | 219, 233, 281 |
| FauI | CCCGC | 1 cut(s) | 306 |
| FokI | GGATG | 2 cut(s) | 114, 119 |
| FspBI | CTAG | 1 cut(s) | 33 |
| HapII | CCGG | 3 cut(s) | 59, 307, 314 |
| Hin1II | CATG | 3 cut(s) | 223, 237, 285 |
| HinfI | GANTC | 2 cut(s) | 74, 143 |
| HpaII | CCGG | 3 cut(s) | 59, 307, 314 |
| HphI | GGTGA | 2 cut(s) | 224, 338 |
| Hpy166II | GTNNAC | 1 cut(s) | 265 |
| Hpy188I | TCNGA | 1 cut(s) | 101 |
| Hpy188III | TCNNGA | 2 cut(s) | 112, 198 |
| Hpy8I | GTNNAC | 1 cut(s) | 265 |
| HpyAV | CCTTC | 1 cut(s) | 203 |
| HpyCH4IV | ACGT | 1 cut(s) | 293 |
| HpyCH4V | TGCA | 3 cut(s) | 88, 241, 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 303 |
| HpyF3I | CTNAG | 2 cut(s) | 336, 357 |
| HpySE526I | ACGT | 1 cut(s) | 293 |
| Hsp92II | CATG | 3 cut(s) | 223, 237, 285 |
| Kzo9I | GATC | 3 cut(s) | 27, 63, 96 |
| LpnPI | CCDG | 8 cut(s) | 72, 172, 251, 299, 320, 323, 327, 381 |
| LweI | GCATC | 1 cut(s) | 268 |
| MaeI | CTAG | 1 cut(s) | 33 |
| MaeII | ACGT | 1 cut(s) | 293 |
| MalI | GATC | 3 cut(s) | 29, 65, 98 |
| MboI | GATC | 3 cut(s) | 27, 63, 96 |
| MboII | GAAGA | 3 cut(s) | 140, 221, 372 |
| MhlI | GDGCHC | 2 cut(s) | 57, 299 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MnlI | CCTC | 6 cut(s) | 85, 124, 208, 314, 317, 352 |
| Mph1103I | ATGCAT | 1 cut(s) | 283 |
| MseI | TTAA | 1 cut(s) | 69 |
| MspA1I | CMGCKG | 1 cut(s) | 301 |
| MspI | CCGG | 3 cut(s) | 59, 307, 314 |
| MspR9I | CCNGG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 303 |
| NciI | CCSGG | 1 cut(s) | 59 |
| NdeII | GATC | 3 cut(s) | 27, 63, 96 |
| NlaIII | CATG | 3 cut(s) | 223, 237, 285 |
| NlaIV | GGNNCC | 1 cut(s) | 45 |
| NsiI | ATGCAT | 1 cut(s) | 283 |
| NspI | RCATGY | 1 cut(s) | 285 |
| PaeI | GCATGC | 1 cut(s) | 285 |
| PfeI | GAWTC | 1 cut(s) | 74 |
| Ple19I | CGATCG | 2 cut(s) | 66, 99 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| PspN4I | GGNNCC | 1 cut(s) | 45 |
| PspPI | GGNCC | 1 cut(s) | 44 |
| PvuI | CGATCG | 2 cut(s) | 66, 99 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| Sau3AI | GATC | 3 cut(s) | 27, 63, 96 |
| Sau96I | GGNCC | 1 cut(s) | 44 |
| SchI | GAGTC | 1 cut(s) | 152 |
| ScrFI | CCNGG | 1 cut(s) | 59 |
| SduI | GDGCHC | 2 cut(s) | 57, 299 |
| SetI | ASST | 7 cut(s) | 164, 180, 214, 258, 296, 328, 342 |
| SfaNI | GCATC | 1 cut(s) | 268 |
| SinI | GGWCC | 1 cut(s) | 44 |
| SmlI | CTYRAG | 2 cut(s) | 147, 163 |
| SmoI | CTYRAG | 2 cut(s) | 147, 163 |
| SphI | GCATGC | 1 cut(s) | 285 |
| SsiI | CCGC | 2 cut(s) | 140, 299 |
| SspMI | CTAG | 1 cut(s) | 33 |
| StyD4I | CCNGG | 1 cut(s) | 57 |
| TaiI | ACGT | 1 cut(s) | 296 |
| TaqI | TCGA | 1 cut(s) | 276 |
| TfiI | GAWTC | 1 cut(s) | 74 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TspDTI | ATGAA | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 1 cut(s) | 44 |
| XceI | RCATGY | 1 cut(s) | 285 |
| XspI | CTAG | 1 cut(s) | 33 |
| Zsp2I | ATGCAT | 1 cut(s) | 283 |