Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0019272

Physical Location & Seq

Genomic Coordinates Forward (+)

20831979 .. 20832510

Gene Structure 532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1206400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTCACCAAGCCTGCTGAGCAAACACCTCTATCTATATTATACCGTGCTCATCTGGCTAAGTTGGCTAGTGTTCCTGACGGAGTGTTCAATGTCATAATCATATTTGGAAAGACTGCTGGTGCTGCCATCAGCCATCATATGGACATTGACAAAGCTGCAGCAAAAAACAATCTGAAACAAGTTTCACTTGAACTAGGAGGCAAATCACCCCCTGTGATTTTTGATGATGCTGATATAAATGTGGCTGCTGATCTCGCTCTCTTGGGAATCCTTTTCAACCAGGTGAAGTTCATAATTTCCGTAGTTAATATGTATAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

109

Amino Acids

11.62

Weight (kDa)

8.0

Isoelectric Point (pI)

19.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	1 - 95	2.7e-19	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019272)

Species	Orthologous Gene IDs
malus_domestica	MD02G1206400.v1.1 MD06G1111500.v1.1 MD16G1057300.v1.1
rosa_multiflora	Rmu_sc0002995.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393520
rosa_samantha	Rh3AG283800 Rh3CG318400 Rh3DG317200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	91, 194, 280
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	52
ApeKI	GCWGC	4 cut(s)	125, 158, 161, 248
AsuHPI	GGTGA	2 cut(s)	201, 298
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	4 cut(s)	112, 145, 173, 235
BccI	CCATC	2 cut(s)	137, 144
BciT130I	CCWGG	1 cut(s)	284
BfaI	CTAG	2 cut(s)	69, 197
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	4 cut(s)	126, 159, 162, 249
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	4 cut(s)	127, 160, 163, 250
Bme1390I	CCNGG	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	112, 145, 173, 235
BsiHKAI	GWGCWC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	253
Bsp1720I	GCTNAGC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	163
BssMI	GATC	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	18, 60
BstEII	GGTNACC	1 cut(s)	4
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 56, 65, 125, 257
BstNI	CCWGG	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	112, 145, 173, 235
Cac8I	GCNNGC	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	282
CviJI	RGCY	6 cut(s)	13, 59, 68, 135, 158, 248
CviKI_1	RGCY	6 cut(s)	13, 59, 68, 135, 158, 248
DdeI	CTNAG	2 cut(s)	18, 60
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	282
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FauNDI	CATATG	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	126, 159, 162, 249
Fsp4HI	GCNGC	4 cut(s)	126, 159, 162, 249
FspBI	CTAG	2 cut(s)	69, 197
GluI	GCNGC	4 cut(s)	126, 159, 162, 249
HinfI	GANTC	1 cut(s)	270
HphI	GGTGA	2 cut(s)	201, 298
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 56, 65, 125, 257
HpyF3I	CTNAG	2 cut(s)	18, 60
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	27, 41, 90, 105, 228, 269, 296
Lsp1109I	GCAGC	4 cut(s)	112, 145, 173, 235
LweI	GCATC	1 cut(s)	220
MabI	ACCWGGT	1 cut(s)	282
MaeI	CTAG	2 cut(s)	69, 197
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	1 cut(s)	297
MnlI	CCTC	2 cut(s)	39, 194
MseI	TTAA	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	5 cut(s)	19, 56, 65, 125, 257
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	127, 160, 163, 250
Psp6I	CCWGG	1 cut(s)	282
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	4 cut(s)	126, 159, 162, 249
Sau3AI	GATC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	3 cut(s)	31, 160, 288
SexAI	ACCWGGT	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	297
SspMI	CTAG	2 cut(s)	69, 197
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	4 cut(s)	125, 158, 161, 248
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	96, 292
Van91I	CCANNNNNTGG	1 cut(s)	142
XspI	CTAG	2 cut(s)	69, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.