Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0019272

Physical Location & Seq

Genomic Coordinates Reverse (-)

25032041 .. 25032594

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1111500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTCACCAAACCTGCTGAGCAAACACCTCTATCTGCATTATACTGTGCGCATCTGGCTAAGTTGGTAAGCTCAGTCGTTTTCTGCGTTTGTGTTCCTGACGGAGTGTTCAATGTCATAACCGGATTTGGAAAGACTGTTGGTGCTGCCACCAACCATCATATGGACATTGACAAAGCTGCAACAAAGAGCAATATGAAACAAGTTTCACTTGAACTAGGAGGCAAATCACCCCTTGTGATTTTTGATGATGCTGATATAAATATGGCTGCTGATCTTGCTCTCTTAGGAATCCTTTTCAATCAGGTGAAGTTCATAATTTCCATAGTTAATATGTGTAAGTGTTGGGTTCAGATAACCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

122

Amino Acids

13.01

Weight (kDa)

7.64

Isoelectric Point (pI)

12.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	1 - 102	3.4e-18	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019272)

Species	Orthologous Gene IDs
malus_domestica	MD02G1206400.v1.1 MD06G1111500.v1.1 MD16G1057300.v1.1
rosa_multiflora	Rmu_sc0002995.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393520
rosa_samantha	Rh3AG283800 Rh3CG318400 Rh3DG317200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	22
AccB7I	CCANNNNNTGG	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	112, 215, 301
AluBI	AGCT	2 cut(s)	72, 179
AluI	AGCT	2 cut(s)	72, 179
ApeKI	GCWGC	3 cut(s)	146, 179, 269
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	222, 319
BbvI	GCAGC	3 cut(s)	133, 166, 256
BccI	CCATC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	3 cut(s)	147, 180, 270
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	3 cut(s)	148, 181, 271
BmsI	GCATC	2 cut(s)	61, 241
Bpu1102I	GCTNAGC	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	9, 87
BseXI	GCAGC	3 cut(s)	133, 166, 256
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	274
Bsp1720I	GCTNAGC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	10, 86
BspMI	ACCTGC	1 cut(s)	22
BssMI	GATC	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	47, 139
BstDEI	CTNAG	4 cut(s)	18, 60, 73, 286
BstEII	GGTNACC	1 cut(s)	4
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 278
BstPI	GGTNACC	1 cut(s)	4
BstV1I	GCAGC	3 cut(s)	133, 166, 256
BveI	ACCTGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	52
CviJI	RGCY	4 cut(s)	59, 72, 179, 269
CviKI_1	RGCY	4 cut(s)	59, 72, 179, 269
DdeI	CTNAG	4 cut(s)	18, 60, 73, 286
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FauNDI	CATATG	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	147, 180, 270
Fsp4HI	GCNGC	3 cut(s)	147, 180, 270
FspAI	RTGCGCAY	1 cut(s)	51
FspBI	CTAG	1 cut(s)	218
FspI	TGCGCA	1 cut(s)	51
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	147, 180, 270
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	222, 319
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	47, 139
HpyCH4V	TGCA	2 cut(s)	38, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 278
HpyF3I	CTNAG	4 cut(s)	18, 60, 73, 286
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	5 cut(s)	27, 41, 111, 136, 290
Lsp1109I	GCAGC	3 cut(s)	133, 166, 256
LweI	GCATC	2 cut(s)	61, 241
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	2 cut(s)	39, 215
MseI	TTAA	1 cut(s)	330
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	56, 278
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	4
NsbI	TGCGCA	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	148, 181, 271
PspEI	GGTNACC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	147, 180, 270
Sau3AI	GATC	1 cut(s)	274
SetI	ASST	5 cut(s)	16, 31, 74, 181, 309
SfaNI	GCATC	2 cut(s)	61, 241
Sse9I	AATT	1 cut(s)	318
SspMI	CTAG	1 cut(s)	218
TaaI	ACNGT	2 cut(s)	47, 139
TasI	AATT	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	3 cut(s)	146, 179, 269
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	212, 304
TspGWI	ACGGA	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.