Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0019272

Physical Location & Seq

Genomic Coordinates Reverse (-)

33230730 .. 33232416

Gene Structure 1687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG283800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGGAGGTCGCTGGTTGTGCCGAGATTTTTCGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTGTTCAACAAGTTGCACAATGGTTGTCAAACCTGCTAAGCAATCACCTCTTTCGGCTTTGTATTATGCTCATCTAGCTAAGTTGGCTAGTGTTCCTAATGGAGTGCTCAATGTCATCACTGGATATGGAGAGACTGCTGGTGCTGCCATCACCCATCATATGGACATTGACAAAGTAAATTCTAGCCGGCTCTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

89

Amino Acids

9.84

Weight (kDa)

10.37

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	22 - 83	2.5e-16	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019272)

Species	Orthologous Gene IDs
malus_domestica	MD02G1206400.v1.1 MD06G1111500.v1.1 MD16G1057300.v1.1
rosa_multiflora	Rmu_sc0002995.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393520
rosa_samantha	Rh3AG283800 Rh3CG318400 Rh3DG317200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccB7I	CCANNNNNTGG	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	247
AsuHPI	GGTGA	2 cut(s)	105, 211
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	45, 224, 231
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	4 cut(s)	143, 156, 252, 268
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	213
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	214
Bpu1102I	GCTNAGC	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1720I	GCTNAGC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	105, 147
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 143, 152, 212
BstV1I	GCAGC	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	57
CviJI	RGCY	5 cut(s)	125, 146, 155, 255, 259
CviKI_1	RGCY	5 cut(s)	125, 146, 155, 255, 259
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	105, 147
FaiI	YATR	5 cut(s)	37, 135, 195, 228, 230
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	4 cut(s)	143, 156, 252, 268
GluI	GCNGC	1 cut(s)	213
HapII	CCGG	1 cut(s)	256
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	2 cut(s)	105, 211
HpyAV	CCTTC	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 143, 152, 212
HpyF3I	CTNAG	2 cut(s)	105, 147
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
LpnPI	CCDG	4 cut(s)	45, 114, 174, 192
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	4 cut(s)	143, 156, 252, 268
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	247
MnlI	CCTC	1 cut(s)	126
MroNI	GCCGGC	1 cut(s)	255
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	19, 143, 152, 212
NaeI	GCCGGC	1 cut(s)	257
NdeI	CATATG	1 cut(s)	228
NgoMIV	GCCGGC	1 cut(s)	255
NmeAIII	GCCGAG	1 cut(s)	48
PdiI	GCCGGC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	4 cut(s)	11, 103, 118, 148
Sse9I	AATT	1 cut(s)	247
SspMI	CTAG	4 cut(s)	143, 156, 252, 268
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	56
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	212
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	247
XspI	CTAG	4 cut(s)	143, 156, 252, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.