Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0019272

Physical Location & Seq

Genomic Coordinates Reverse (-)

34184294 .. 34209591

Gene Structure 25298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG317200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGGAGGTCGCTGGTTGTGCCGAGATTTTTCGTATGGCAGAGAAGGAGATGGAGTACAGGGTTGAGTTGTTCAACAAGTTGCACAATGGTTGTCAAACCTGCTGAGCAATCACCTCTTTCGGCTTTGTATTATGCTCATCTAGCTAAGTTGGCTGCTGGTGTTCCTAATGGAGTGCTCAATGTCATCACTGGATATGGAGAGACTGCTGGTGCTACCATCACCCATCATATGGACATTGACAAAGAGAAAGGTGAACGACCTGCCCAGAAAGAGGAAAAGAAGACAATCAAATTTCTCCGATTGAAATTCTTATTAGGTATGCTATTTCATGCTTTATTAGCAGTTCCATTGGTTTGTAGTTTCCTTTTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

125

Amino Acids

13.96

Weight (kDa)

9.9

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	23 - 82	7.5e-15	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019272)

Species	Orthologous Gene IDs
malus_domestica	MD02G1206400.v1.1 MD06G1111500.v1.1 MD16G1057300.v1.1
rosa_multiflora	Rmu_sc0002995.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393520
rosa_samantha	Rh3AG283800 Rh3CG318400 Rh3DG317200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	109, 271
AccB7I	CCANNNNNTGG	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	293, 308
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	232, 274
AgsI	TTSAA	2 cut(s)	75, 307
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	293, 308
AsuHPI	GGTGA	3 cut(s)	105, 214, 266
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	3 cut(s)	45, 227, 234
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	109, 271
BisI	GCNGC	1 cut(s)	156
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 274
Bse1I	ACTGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	232, 274
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	232, 274
BsmAI	GTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1720I	GCTNAGC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	97
BspMI	ACCTGC	2 cut(s)	109, 271
BsrI	ACTGG	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	105, 147
BstMAI	GTCTC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 143, 152, 341
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	2 cut(s)	109, 271
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	3 cut(s)	125, 146, 155
CviKI_1	RGCY	3 cut(s)	125, 146, 155
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	105, 147
FaeI	CATG	1 cut(s)	335
FaiI	YATR	7 cut(s)	37, 135, 198, 231, 233, 323, 333
FatI	CATG	1 cut(s)	331
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	335
HphI	GGTGA	3 cut(s)	105, 214, 266
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 143, 152, 341
HpyF3I	CTNAG	2 cut(s)	105, 147
Hsp92II	CATG	1 cut(s)	335
LpnPI	CCDG	7 cut(s)	45, 114, 144, 177, 195, 276, 281
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	143
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	2 cut(s)	293, 308
MnlI	CCTC	2 cut(s)	126, 268
MwoI	GCNNNNNNNGC	4 cut(s)	19, 143, 152, 341
NdeI	CATATG	1 cut(s)	231
NlaIII	CATG	1 cut(s)	335
NmeAIII	GCCGAG	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	7 cut(s)	11, 103, 118, 148, 256, 265, 322
Sse9I	AATT	2 cut(s)	293, 308
SspMI	CTAG	1 cut(s)	143
TasI	AATT	2 cut(s)	293, 308
TatI	WGTACW	1 cut(s)	56
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	293, 308
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.