Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002995.1

Orthogroup ID

OG0019272

Physical Location & Seq

Genomic Coordinates Forward (+)

28228 .. 29962

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002995.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgttcagattcttgagtgaccagaggagttatcgagccggatactgtgtcggtaagcgccagcagggggagggtggagaatcgggcaaccttgcatctctgtgcaaaactttgatggggaaggaagctatgtttaacgagtttgtgacggagaggcaaacaatgctcgacttgttgttgaacgggggatttctctactgggggatgtttaaatttcagagcacatttgagagtatgaagaggaaattcatgtttacaggttgcacaatggttgtcaaacctgctgagcaatcacctctttcggctttgtattatgctcatctagctaagttggctgctggtgttcctaatggagtgctcaatgtcatcactggatatggagagactgctagtgctaccatcacccatcatatggacattgacaaagtaaattctagccggctcttttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

150

Amino Acids

16.71

Weight (kDa)

9.03

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019272)

Species	Orthologous Gene IDs
malus_domestica	MD02G1206400.v1.1 MD06G1111500.v1.1 MD16G1057300.v1.1
rosa_multiflora	Rmu_sc0002995.1_g000006
rosa_roxburghii	Rroxscaffold_6G00393520
rosa_samantha	Rh3AG283800 Rh3CG318400 Rh3DG317200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	412
AcsI	RAATTY	3 cut(s)	212, 245, 430
AfiI	CCNNNNNNNGG	2 cut(s)	67, 412
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	2 cut(s)	128, 326
AluI	AGCT	2 cut(s)	128, 326
Alw21I	GWGCWC	2 cut(s)	224, 360
Alw26I	GTCTC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	3 cut(s)	212, 245, 430
AspLEI	GCGC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	285, 394
Bbv12I	GWGCWC	2 cut(s)	224, 360
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	3 cut(s)	109, 407, 414
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	4 cut(s)	323, 390, 435, 451
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	208
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 412
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	2 cut(s)	203, 376
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	67, 412
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	203, 376
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	224, 360
BsiSI	CCGG	2 cut(s)	39, 439
BslI	CCNNNNNNNGG	2 cut(s)	67, 412
BsmAI	GTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	224, 360
Bsp1720I	GCTNAGC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	203, 376
BssAI	RCCGGY	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	62, 440
BstDEI	CTNAG	2 cut(s)	285, 327
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 323, 332
BstV1I	GCAGC	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	62, 440
CfoI	GCGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	438
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	7 cut(s)	38, 128, 305, 326, 335, 438, 442
CviKI_1	RGCY	7 cut(s)	38, 128, 305, 326, 335, 438, 442
DdeI	CTNAG	2 cut(s)	285, 327
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
FaeI	CATG	1 cut(s)	253
FaiI	YATR	7 cut(s)	131, 236, 251, 315, 378, 411, 413
FatI	CATG	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	4 cut(s)	323, 390, 435, 451
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	336
HaeII	RGCGCY	1 cut(s)	61
HapII	CCGG	2 cut(s)	39, 439
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	9, 80
HpaII	CCGG	2 cut(s)	39, 439
HphI	GGTGA	2 cut(s)	285, 394
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	2 cut(s)	8, 219
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	255
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	95, 105, 264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 323, 332
HpyF3I	CTNAG	2 cut(s)	285, 327
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	438
KroNI	GCCGGC	1 cut(s)	440
LpnPI	CCDG	9 cut(s)	35, 50, 52, 74, 184, 243, 294, 324, 357
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	4 cut(s)	323, 390, 435, 451
MaeIII	GTNAC	2 cut(s)	17, 145
MboII	GAAGA	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	224, 360
MluCI	AATT	3 cut(s)	212, 245, 430
MnlI	CCTC	5 cut(s)	18, 64, 147, 234, 306
MroNI	GCCGGC	1 cut(s)	438
MseI	TTAA	2 cut(s)	135, 210
MslI	CAYNNNNRTG	1 cut(s)	100
MspI	CCGG	2 cut(s)	39, 439
MwoI	GCNNNNNNNGC	3 cut(s)	163, 323, 332
NaeI	GCCGGC	1 cut(s)	440
NdeI	CATATG	1 cut(s)	411
NgoMIV	GCCGGC	1 cut(s)	438
NlaIII	CATG	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	17, 145
PdiI	GCCGGC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	9, 80
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	135, 210
SatI	GCNGC	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	224, 360
SetI	ASST	6 cut(s)	93, 130, 262, 283, 298, 328
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	212, 245, 430
SspMI	CTAG	4 cut(s)	323, 390, 435, 451
TaaI	ACNGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	34, 168
TasI	AATT	3 cut(s)	212, 245, 430
TfiI	GAWTC	2 cut(s)	9, 80
Tru1I	TTAA	2 cut(s)	135, 210
Tru9I	TTAA	2 cut(s)	135, 210
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	2 cut(s)	17, 145
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	2 cut(s)	17, 145
TspDTI	ATGAA	2 cut(s)	238, 251
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	412
XapI	RAATTY	3 cut(s)	212, 245, 430
XspI	CTAG	4 cut(s)	323, 390, 435, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.