Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016383

Physical Location & Seq

Genomic Coordinates Reverse (-)

29807579 .. 29812008

Gene Structure 4430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1247900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATATCTTCAGGGATAAACCTGGTGATGACGGTGATTGGGTTCGCGGTGAGCACTATGTTCATCGTGTTCGTGTGCACCAGGCTTGTCTGTGCGAGGATTCACCTCAATGTTTCTAGACGCTCCTTCCCGATAGCTTCCAGATCCGATCTCAGTATTTTGGAGCGGGGATTGCATGGCGTTGAACCTGTAGTAGTAGCCAAGTTTCCAACAAAGAAGTACAGTGATGCATTTTTTTCAGCAGCAGAAGATGCTCAATGCACTGTTTGCCTCGCGGAATACCATGGCGATGATGTATTGCGGATCCTCCCCTATTGTGAGCACTCCTTCCATGTGACCTGTATAGACATATGGCTTCAGCAGCATTCCACATGTCCTGTTTGTAGAATATCACTGCGCGAGTTTCCTGAGAGAAAACGCCGCATGCAACCCTTGTTCAGTTCGGCTATTCGGTCTCATTACGGTACAGAGTCCTTCAATACCCATTCTTATCGCTATCTCTTGAATAGTCGAGCATCAAGAACTCATGAAAACCATGGTATGGATCCCATTCAAGAAGATAATGCAGCATCAGAGGGTGATGCAACAGATGCCAGGGAGAATAGCTCCCCCTTAACTGAGAGTAATCAGATTTCTAAAGACTCGGCAAATAAGCACGTAGAAAGCCCATCAAATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.38

Weight (kDa)

6.59

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	85 - 129	5.4e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	86 - 129	2.5e-13	Ring finger domain
zf-RING_11	PF17123	86 - 115	7.3e-08	RING-like zinc finger
zf-ANAPC11	PF12861	86 - 131	7.7e-07	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4_2	PF13923	86 - 128	1.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	87 - 128	7.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950
malus_domestica	MD02G1247900.v1.1 MD07G1068500.v1.1
prunus_persica	Prupe.2G086200_v2.0.a1
pyrus_communis	pycom02g21200 pycom07g05270
rosa_chinensis	RchiOBHm_Chr1g0333171
rosa_laevigata	RLG00000029621
rosa_roxburghii	Rroxscaffold_4G00317720
rosa_rugosa	Rorug01G0107900
rosa_samantha	Rh1AG130900 Rh1BG100100 Rh1CG124700 Rh1DG136300
rosa_wichuraiana	Rw0G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccBSI	CCGCTC	1 cut(s)	166
AccII	CGCG	3 cut(s)	47, 275, 399
AciI	CCGC	5 cut(s)	47, 166, 275, 301, 421
AclWI	GGATC	5 cut(s)	138, 298, 311, 539, 552
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	2 cut(s)	221, 466
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	185, 478, 505, 554
AjnI	CCWGG	3 cut(s)	21, 80, 593
AluBI	AGCT	2 cut(s)	137, 606
AluI	AGCT	2 cut(s)	137, 606
Alw21I	GWGCWC	3 cut(s)	56, 80, 324
Alw26I	GTCTC	1 cut(s)	459
Alw44I	GTGCAC	1 cut(s)	76
AlwI	GGATC	5 cut(s)	138, 298, 311, 539, 552
ApaLI	GTGCAC	1 cut(s)	76
ApeKI	GCWGC	3 cut(s)	242, 361, 566
AspLEI	GCGC	1 cut(s)	399
AsuHPI	GGTGA	5 cut(s)	37, 46, 61, 95, 590
BaeGI	GKGCMC	1 cut(s)	80
BamHI	GGATCC	2 cut(s)	303, 544
Bbv12I	GWGCWC	3 cut(s)	56, 80, 324
BbvI	GCAGC	3 cut(s)	254, 373, 578
BccI	CCATC	1 cut(s)	676
BciT130I	CCWGG	3 cut(s)	23, 82, 595
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	4 cut(s)	243, 362, 421, 567
BlsI	GCNGC	4 cut(s)	244, 363, 422, 568
Bme1390I	CCNGG	3 cut(s)	23, 82, 595
BmiI	GGNNCC	2 cut(s)	305, 546
BmrFI	CCNGG	3 cut(s)	23, 82, 595
BmsI	GCATC	6 cut(s)	217, 241, 524, 571, 578, 580
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BsaAI	YACGTR	1 cut(s)	658
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	283, 535, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
BseBI	CCWGG	3 cut(s)	23, 82, 595
BseDI	CCNNGG	3 cut(s)	283, 535, 594
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMII	CTCAG	3 cut(s)	166, 399, 609
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	254, 373, 578
Bsh1236I	CGCG	3 cut(s)	47, 275, 399
BsiHKAI	GWGCWC	3 cut(s)	56, 80, 324
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	459
BsmI	GAATGC	1 cut(s)	364
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	3 cut(s)	56, 80, 324
Bsp143I	GATC	4 cut(s)	143, 148, 303, 544
Bsp19I	CCATGG	2 cut(s)	283, 535
BspACI	CCGC	5 cut(s)	47, 166, 275, 301, 421
BspCNI	CTCAG	3 cut(s)	165, 400, 610
BspFNI	CGCG	3 cut(s)	47, 275, 399
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	305, 546
BspPI	GGATC	5 cut(s)	138, 298, 311, 539, 552
BspTNI	GGTCTC	1 cut(s)	459
BsrBI	CCGCTC	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	283, 535, 594
BssMI	GATC	4 cut(s)	143, 148, 303, 544
BssT1I	CCWWGG	2 cut(s)	283, 535
Bst2UI	CCWGG	3 cut(s)	23, 82, 595
Bst4CI	ACNGT	4 cut(s)	34, 224, 265, 464
BstAPI	GCANNNNNTGC	3 cut(s)	251, 267, 590
BstBAI	YACGTR	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	152, 408, 618
BstDSI	CCRYGG	2 cut(s)	283, 535
BstFNI	CGCG	3 cut(s)	47, 275, 399
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	4 cut(s)	146, 151, 306, 547
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	4 cut(s)	143, 148, 303, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 251, 267, 361, 590
BstNI	CCWGG	3 cut(s)	23, 82, 595
BstNSI	RCATGY	2 cut(s)	375, 427
BstSCI	CCNGG	3 cut(s)	21, 80, 593
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	3 cut(s)	47, 275, 399
BstV1I	GCAGC	3 cut(s)	254, 373, 578
BstX2I	RGATCY	3 cut(s)	143, 303, 544
BstYI	RGATCY	3 cut(s)	143, 303, 544
BtgI	CCRYGG	2 cut(s)	283, 535
BtgZI	GCGATG	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	3 cut(s)	229, 261, 392
Cac8I	GCNNGC	1 cut(s)	425
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	399
CseI	GACGC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	220, 465
CviAII	CATG	7 cut(s)	176, 284, 332, 372, 424, 527, 536
CviJI	RGCY	7 cut(s)	85, 137, 200, 355, 446, 606, 666
CviKI_1	RGCY	7 cut(s)	85, 137, 200, 355, 446, 606, 666
CviQI	GTAC	2 cut(s)	220, 465
DdeI	CTNAG	3 cut(s)	152, 408, 618
DpnI	GATC	4 cut(s)	145, 150, 305, 546
DpnII	GATC	4 cut(s)	143, 148, 303, 544
Eco130I	CCWWGG	2 cut(s)	283, 535
Eco31I	GGTCTC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	21, 80, 593
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	283, 535
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	283, 535
FaeI	CATG	7 cut(s)	179, 287, 335, 375, 427, 530, 539
FatI	CATG	7 cut(s)	175, 283, 331, 371, 423, 526, 535
FauI	CCCGC	1 cut(s)	159
FauNDI	CATATG	1 cut(s)	350
Fnu4HI	GCNGC	4 cut(s)	243, 362, 421, 567
Fsp4HI	GCNGC	4 cut(s)	243, 362, 421, 567
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	4 cut(s)	243, 362, 421, 567
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	7 cut(s)	179, 287, 335, 375, 427, 530, 539
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	100, 470, 641
HphI	GGTGA	5 cut(s)	37, 46, 61, 95, 590
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	3 cut(s)	148, 574, 630
Hpy188III	TCNNGA	8 cut(s)	117, 130, 141, 407, 502, 519, 527, 554
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	3 cut(s)	136, 337, 484
HpyCH4III	ACNGT	4 cut(s)	34, 224, 265, 464
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	7 cut(s)	78, 175, 230, 261, 427, 566, 584
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 251, 267, 361, 590
HpyF3I	CTNAG	3 cut(s)	152, 408, 618
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	7 cut(s)	179, 287, 335, 375, 427, 530, 539
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	143, 148, 303, 544
LmnI	GCTCC	3 cut(s)	128, 163, 611
Lsp1109I	GCAGC	3 cut(s)	254, 373, 578
LweI	GCATC	6 cut(s)	217, 241, 524, 571, 578, 580
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	145, 150, 305, 546
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	4 cut(s)	143, 148, 303, 544
MboII	GAAGA	2 cut(s)	260, 569
MflI	RGATCY	3 cut(s)	143, 303, 544
MhlI	GDGCHC	3 cut(s)	56, 80, 324
MlyI	GAGTC	2 cut(s)	479, 635
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	90, 116, 281, 317, 568
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	1 cut(s)	614
MslI	CAYNNNNRTG	2 cut(s)	108, 288
MspR9I	CCNGG	3 cut(s)	23, 82, 595
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	23, 82, 595
MvnI	CGCG	3 cut(s)	47, 275, 399
MwoI	GCNNNNNNNGC	5 cut(s)	172, 251, 267, 361, 590
NcoI	CCATGG	2 cut(s)	283, 535
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	4 cut(s)	143, 148, 303, 544
NlaIII	CATG	7 cut(s)	179, 287, 335, 375, 427, 530, 539
NlaIV	GGNNCC	2 cut(s)	305, 546
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	2 cut(s)	375, 427
PaeI	GCATGC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	526
PciI	ACATGT	1 cut(s)	371
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	4 cut(s)	244, 363, 422, 568
PleI	GAGTC	2 cut(s)	478, 635
PpsI	GAGTC	2 cut(s)	478, 635
Ppu21I	YACGTR	1 cut(s)	658
PscI	ACATGT	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	21, 80, 593
PspGI	CCWGG	3 cut(s)	21, 80, 593
PspN4I	GGNNCC	2 cut(s)	305, 546
PsuI	RGATCY	3 cut(s)	143, 303, 544
RsaI	GTAC	2 cut(s)	221, 466
RsaNI	GTAC	2 cut(s)	220, 465
RseI	CAYNNNNRTG	2 cut(s)	108, 288
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	4 cut(s)	243, 362, 421, 567
Sau3AI	GATC	4 cut(s)	143, 148, 303, 544
SchI	GAGTC	2 cut(s)	479, 635
ScrFI	CCNGG	3 cut(s)	23, 82, 595
SduI	GDGCHC	3 cut(s)	56, 80, 324
SetI	ASST	7 cut(s)	24, 108, 139, 190, 341, 608, 660
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	6 cut(s)	217, 241, 524, 571, 578, 580
SfcI	CTRYAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	2 cut(s)	108, 288
SphI	GCATGC	1 cut(s)	427
SsiI	CCGC	5 cut(s)	47, 166, 275, 301, 421
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	21, 80, 593
StyI	CCWWGG	2 cut(s)	283, 535
TaaI	ACNGT	4 cut(s)	34, 224, 265, 464
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	1 cut(s)	511
TaqII	GACCGA	1 cut(s)	441
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	3 cut(s)	229, 268, 399
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	242, 361, 566
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	52, 543
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	3 cut(s)	229, 268, 399
Van91I	CCANNNNNTGG	1 cut(s)	541
VneI	GTGCAC	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	116
XceI	RCATGY	2 cut(s)	375, 427
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.