Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016383

Physical Location & Seq

Genomic Coordinates Reverse (-)

13649272 .. 13654389

Gene Structure 5118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G086200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATATCGTCAGGGATAAATCTGGTGATGACGGTGATTGGGTTCGCGGTGAGCACCATGTTCATCGTGTTCGTGTGCACCAGGCTTGTCTGTGCTCGGATTCACCTCAACGTTTCAAGACGCTCCTTCCCCATAGCTTCCAGATCCGATCTCAGTATTCTGGAACGGGGGTTACATGGCGTTGAACCTGTAGTAGTAGCCAACTTCCCAACAAAGAAGTTCAGTGATGCATTTTTTTCAGTCGTAGAAGATGCTCAATGCACTGTTTGCCTCATGGAATACCATGGTGATGATGTATTGCGGATTCTCCCCTATTGTGGGCACTCCTTCCATGTGACCTGTATAGACATATGGCTTCAGCAGCATTCCACATGTCCTGTATGTAGAATATCATTGCGCGAGTTTCCTGAGAGAAAACGGCGCATGCAACCCTTGTTCAGTTCAGCTATTCGATCTCATTATGGTAGAGAGTCCTTCAATACCCATTCTTATCGCTATATGTTGAATAATCGTGGATCAAGAACCCATGACAACCGTGGCATGGACCCAATTCAAGAAGATAATTTACCATCGGAGGGTGATGCGGCAGATACCAGGGAGAATGCGCCCCCCTTAACTGAGAATATTCAGGTTTCTAAGGACTTAGCAAACAAGCGTGTAGAAAGCCCATCAAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.6

Weight (kDa)

7.65

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950
malus_domestica	MD02G1247900.v1.1 MD07G1068500.v1.1
prunus_persica	Prupe.2G086200_v2.0.a1
pyrus_communis	pycom02g21200 pycom07g05270
rosa_chinensis	RchiOBHm_Chr1g0333171
rosa_laevigata	RLG00000029621
rosa_roxburghii	Rroxscaffold_4G00317720
rosa_rugosa	Rorug01G0107900
rosa_samantha	Rh1AG130900 Rh1BG100100 Rh1CG124700 Rh1DG136300
rosa_wichuraiana	Rw0G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	47, 399
AciI	CCGC	3 cut(s)	47, 301, 584
AclI	AACGTT	1 cut(s)	111
AclWI	GGATC	2 cut(s)	138, 523
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	317, 318, 541, 575
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	117, 185, 478, 505, 554
AjnI	CCWGG	2 cut(s)	80, 593
AluBI	AGCT	2 cut(s)	137, 446
AluI	AGCT	2 cut(s)	137, 446
Alw21I	GWGCWC	3 cut(s)	56, 80, 97
Alw44I	GTGCAC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	138, 523
ApaLI	GTGCAC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	361
AspLEI	GCGC	3 cut(s)	399, 423, 607
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	6 cut(s)	37, 46, 61, 95, 299, 590
AvaII	GGWCC	1 cut(s)	544
BaeGI	GKGCMC	2 cut(s)	80, 324
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
Bbv12I	GWGCWC	3 cut(s)	56, 80, 97
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	577, 676
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	2 cut(s)	82, 595
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	362, 585
BlsI	GCNGC	2 cut(s)	363, 586
Bme1390I	CCNGG	2 cut(s)	82, 595
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	82, 595
BmsI	GCATC	3 cut(s)	217, 241, 571
BsaJI	CCNNGG	3 cut(s)	283, 535, 594
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 318, 541, 575
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	2 cut(s)	82, 595
BseDI	CCNNGG	3 cut(s)	283, 535, 594
BseLI	CCNNNNNNNGG	4 cut(s)	317, 318, 541, 575
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	166, 399, 609
BseSI	GKGCMC	2 cut(s)	80, 324
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	2 cut(s)	47, 399
BsiHKAI	GWGCWC	3 cut(s)	56, 80, 97
BslI	CCNNNNNNNGG	4 cut(s)	317, 318, 541, 575
BsmI	GAATGC	2 cut(s)	364, 607
Bsp1286I	GDGCHC	4 cut(s)	56, 80, 97, 324
Bsp143I	GATC	4 cut(s)	143, 148, 452, 515
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	3 cut(s)	47, 301, 584
BspCNI	CTCAG	3 cut(s)	165, 400, 610
BspFNI	CGCG	2 cut(s)	47, 399
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	2 cut(s)	138, 523
BsrDI	GCAATG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	283, 535, 594
BssMI	GATC	4 cut(s)	143, 148, 452, 515
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	82, 595
Bst4CI	ACNGT	3 cut(s)	34, 265, 536
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	5 cut(s)	152, 408, 618, 636, 643
BstDSI	CCRYGG	2 cut(s)	283, 535
BstFNI	CGCG	2 cut(s)	47, 399
BstHHI	GCGC	3 cut(s)	399, 423, 607
BstKTI	GATC	4 cut(s)	146, 151, 455, 518
BstMBI	GATC	4 cut(s)	143, 148, 452, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 361
BstNI	CCWGG	2 cut(s)	82, 595
BstNSI	RCATGY	2 cut(s)	375, 427
BstSCI	CCNGG	2 cut(s)	80, 593
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	2 cut(s)	80, 324
BstUI	CGCG	2 cut(s)	47, 399
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	283, 535
BtsIMutI	CAGTG	2 cut(s)	229, 261
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	3 cut(s)	399, 423, 607
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	129
CviAII	CATG	9 cut(s)	58, 176, 274, 284, 332, 372, 424, 527, 541
CviJI	RGCY	6 cut(s)	85, 137, 200, 355, 446, 666
CviKI_1	RGCY	6 cut(s)	85, 137, 200, 355, 446, 666
DdeI	CTNAG	5 cut(s)	152, 408, 618, 636, 643
DpnI	GATC	4 cut(s)	145, 150, 454, 517
DpnII	GATC	4 cut(s)	143, 148, 452, 515
Eco130I	CCWWGG	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	80, 593
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	9 cut(s)	61, 179, 277, 287, 335, 375, 427, 530, 544
FatI	CATG	9 cut(s)	57, 175, 273, 283, 331, 371, 423, 526, 540
FauNDI	CATATG	1 cut(s)	350
Fnu4HI	GCNGC	2 cut(s)	362, 585
Fsp4HI	GCNGC	2 cut(s)	362, 585
GlaI	GCGC	3 cut(s)	398, 422, 606
GluI	GCNGC	2 cut(s)	362, 585
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	3 cut(s)	399, 423, 607
Hin1II	CATG	9 cut(s)	61, 179, 277, 287, 335, 375, 427, 530, 544
Hin6I	GCGC	3 cut(s)	397, 421, 605
HinP1I	GCGC	3 cut(s)	397, 421, 605
HinfI	GANTC	3 cut(s)	100, 304, 470
HphI	GGTGA	6 cut(s)	37, 46, 61, 95, 299, 590
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	3 cut(s)	99, 148, 574
Hpy188III	TCNNGA	6 cut(s)	117, 141, 161, 407, 519, 554
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	3 cut(s)	136, 337, 484
HpyCH4III	ACNGT	3 cut(s)	34, 265, 536
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	4 cut(s)	78, 230, 261, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 361
HpyF3I	CTNAG	5 cut(s)	152, 408, 618, 636, 643
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	9 cut(s)	61, 179, 277, 287, 335, 375, 427, 530, 544
HspAI	GCGC	3 cut(s)	397, 421, 605
Kzo9I	GATC	4 cut(s)	143, 148, 452, 515
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	217, 241, 571
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	171, 334
MalI	GATC	4 cut(s)	145, 150, 454, 517
MboI	GATC	4 cut(s)	143, 148, 452, 515
MboII	GAAGA	2 cut(s)	260, 569
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	4 cut(s)	56, 80, 97, 324
MluCI	AATT	2 cut(s)	549, 562
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	3 cut(s)	116, 281, 568
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	1 cut(s)	614
MslI	CAYNNNNRTG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	82, 595
Mva1269I	GAATGC	2 cut(s)	364, 607
MvaI	CCWGG	2 cut(s)	82, 595
MvnI	CGCG	2 cut(s)	47, 399
MwoI	GCNNNNNNNGC	2 cut(s)	267, 361
NcoI	CCATGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	4 cut(s)	143, 148, 452, 515
NlaIII	CATG	9 cut(s)	61, 179, 277, 287, 335, 375, 427, 530, 544
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	2 cut(s)	375, 427
PaeI	GCATGC	1 cut(s)	427
PciI	ACATGT	1 cut(s)	371
PctI	GAATGC	2 cut(s)	364, 607
PfeI	GAWTC	2 cut(s)	100, 304
PkrI	GCNGC	2 cut(s)	363, 586
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	371
Psp1406I	AACGTT	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	80, 593
PspGI	CCWGG	2 cut(s)	80, 593
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	544
PsrI	GAACNNNNNNTAC	2 cut(s)	156, 188
PsuI	RGATCY	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	2 cut(s)	362, 585
Sau3AI	GATC	4 cut(s)	143, 148, 452, 515
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	82, 595
SduI	GDGCHC	4 cut(s)	56, 80, 97, 324
SetI	ASST	7 cut(s)	108, 114, 139, 190, 341, 448, 633
SfaNI	GCATC	3 cut(s)	217, 241, 571
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	288
SphI	GCATGC	1 cut(s)	427
Sse9I	AATT	2 cut(s)	549, 562
SsiI	CCGC	3 cut(s)	47, 301, 584
SspI	AATATT	1 cut(s)	625
StyD4I	CCNGG	2 cut(s)	80, 593
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	34, 265, 536
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	451
TasI	AATT	2 cut(s)	549, 562
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	100, 304
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	2 cut(s)	229, 268
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	2 cut(s)	229, 268
VneI	GTGCAC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	544
XceI	RCATGY	2 cut(s)	375, 427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.