Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00514

Orthogroup ID

OG0016383

Physical Location & Seq

Genomic Coordinates Reverse (-)

9727 .. 15503

Gene Structure 5777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATATCGTCAGGGGTTAACCTGGTGATGACGGTGATTGGTTTCGCAGTGAGCACCTTGTTCATCGTCTTTGTGTGCACCAGGCTTATTTGTGCTCGGATTCACCTCAATGTTTCAAGACGCTCCTTCCCCACAGCTTCTAGATCCGATCTCAGTATTCTAGAATGGGGTTTACATGGCGTTGAACCTGTAGCTGTAGCCAACTTTCCAACAAAGAAGTACAATGATCCATTTTTTTCAGCAGTTGAAGATGCTCAATGTACAGTTTGCCTCACAGAATACCATGGCGATGAAGTATTGCGGATCCTCCCTTATTGTGGGCACTCATTCCATGTGACCTGTATAGACATATGGCTTCATCAGCATTCCACATGTCCTGTTTGTAGAATATCATTGCGCGAGCATCCTGAGAGAAAACATCGTTTGCAACCCTTGTTCAGTTCAGCTATTCGATCTCATTATGGTACAGAATCCTCTGACATCCATTCTTATCGCTATCCTTTGAACAATCATGGATCAAGAACACATGCCAACCGTAGTATGGACCCCATTCAAGAGGATCATATAGCATCTGAGGGTGATGGATCAGATGCCAGGGAGAATGCCTTGCCCTTAAATCAGAGTAATCTAAATTCTAAGGACATGACAAACAAGCACGTAGAAAGCCCATCAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

226

Amino Acids

25.39

Weight (kDa)

6.55

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	86 - 129	1.4e-13	Ring finger domain
zf-RING_11	PF17123	86 - 115	1.6e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	86 - 128	1.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	86 - 131	9.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	87 - 129	1.4e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950
malus_domestica	MD02G1247900.v1.1 MD07G1068500.v1.1
prunus_persica	Prupe.2G086200_v2.0.a1
pyrus_communis	pycom02g21200 pycom07g05270
rosa_chinensis	RchiOBHm_Chr1g0333171
rosa_laevigata	RLG00000029621
rosa_roxburghii	Rroxscaffold_4G00317720
rosa_rugosa	Rorug01G0107900
rosa_samantha	Rh1AG130900 Rh1BG100100 Rh1CG124700 Rh1DG136300
rosa_wichuraiana	Rw0G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	399
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	7 cut(s)	138, 221, 298, 311, 523, 567, 592
AcsI	RAATTY	1 cut(s)	631
AfaI	GTAC	3 cut(s)	221, 262, 466
AfiI	CCNNNNNNNGG	2 cut(s)	317, 541
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	117, 185, 248, 505, 554
AjnI	CCWGG	3 cut(s)	21, 80, 593
AluBI	AGCT	3 cut(s)	137, 194, 446
AluI	AGCT	3 cut(s)	137, 194, 446
Alw21I	GWGCWC	3 cut(s)	56, 80, 97
Alw44I	GTGCAC	1 cut(s)	76
AlwI	GGATC	7 cut(s)	138, 221, 298, 311, 523, 567, 592
ApaLI	GTGCAC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	4 cut(s)	37, 46, 95, 590
AvaII	GGWCC	1 cut(s)	544
BaeGI	GKGCMC	2 cut(s)	80, 324
BamHI	GGATCC	1 cut(s)	303
Bbv12I	GWGCWC	3 cut(s)	56, 80, 97
BccI	CCATC	2 cut(s)	575, 676
BciT130I	CCWGG	3 cut(s)	23, 82, 595
BfaI	CTAG	2 cut(s)	141, 161
BfmI	CTRYAG	2 cut(s)	189, 195
Bme1390I	CCNGG	3 cut(s)	23, 82, 595
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	2 cut(s)	305, 546
BmrFI	CCNGG	3 cut(s)	23, 82, 595
BmsI	GCATC	4 cut(s)	241, 412, 578, 580
BsaAI	YACGTR	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	283, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 541
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	23, 82, 595
BseDI	CCNNGG	2 cut(s)	283, 594
BseGI	GGATG	2 cut(s)	403, 480
BseLI	CCNNNNNNNGG	2 cut(s)	317, 541
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	166, 399, 564
BseSI	GKGCMC	2 cut(s)	80, 324
Bsh1236I	CGCG	1 cut(s)	399
BsiHKAI	GWGCWC	3 cut(s)	56, 80, 97
BslI	CCNNNNNNNGG	2 cut(s)	317, 541
BsmI	GAATGC	2 cut(s)	364, 607
Bsp1286I	GDGCHC	4 cut(s)	56, 80, 97, 324
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	1 cut(s)	301
BspCNI	CTCAG	3 cut(s)	165, 400, 565
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	305, 546
BspPI	GGATC	7 cut(s)	138, 221, 298, 311, 523, 567, 592
BsrDI	GCAATG	1 cut(s)	392
BsrGI	TGTACA	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	283, 594
BssMI	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	3 cut(s)	23, 82, 595
Bst4CI	ACNGT	3 cut(s)	34, 265, 536
BstAUI	TGTACA	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	4 cut(s)	152, 408, 573, 636
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	403, 480
BstFNI	CGCG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	8 cut(s)	146, 151, 229, 306, 455, 518, 562, 587
BstMBI	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	3 cut(s)	23, 82, 595
BstNSI	RCATGY	2 cut(s)	375, 530
BstSCI	CCNGG	3 cut(s)	21, 80, 593
BstSFI	CTRYAG	2 cut(s)	189, 195
BstSLI	GKGCMC	2 cut(s)	80, 324
BstUI	CGCG	1 cut(s)	399
BstX2I	RGATCY	2 cut(s)	143, 303
BstYI	RGATCY	2 cut(s)	143, 303
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	403, 480
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	401
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	220, 261, 465
CviAII	CATG	7 cut(s)	176, 284, 332, 372, 512, 527, 643
CviJI	RGCY	7 cut(s)	85, 137, 194, 200, 355, 446, 666
CviKI_1	RGCY	7 cut(s)	85, 137, 194, 200, 355, 446, 666
CviQI	GTAC	3 cut(s)	220, 261, 465
DdeI	CTNAG	4 cut(s)	152, 408, 573, 636
DpnI	GATC	8 cut(s)	145, 150, 228, 305, 454, 517, 561, 586
DpnII	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
Eco130I	CCWWGG	1 cut(s)	283
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	544
EcoRII	CCWGG	3 cut(s)	21, 80, 593
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	7 cut(s)	179, 287, 335, 375, 515, 530, 646
FatI	CATG	7 cut(s)	175, 283, 331, 371, 511, 526, 642
FauNDI	CATATG	1 cut(s)	350
FokI	GGATG	2 cut(s)	390, 467
FspBI	CTAG	2 cut(s)	141, 161
GlaI	GCGC	1 cut(s)	398
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	7 cut(s)	179, 287, 335, 375, 515, 530, 646
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	100, 470
HpaI	GTTAAC	1 cut(s)	19
HphI	GGTGA	4 cut(s)	37, 46, 95, 590
Hpy166II	GTNNAC	3 cut(s)	19, 78, 173
Hpy188I	TCNGA	6 cut(s)	99, 148, 478, 574, 589, 621
Hpy188III	TCNNGA	6 cut(s)	117, 141, 161, 407, 519, 554
Hpy8I	GTNNAC	3 cut(s)	19, 78, 173
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	3 cut(s)	34, 265, 536
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	2 cut(s)	78, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	4 cut(s)	152, 408, 573, 636
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	7 cut(s)	179, 287, 335, 375, 515, 530, 646
HspAI	GCGC	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
LmnI	GCTCC	1 cut(s)	128
LweI	GCATC	4 cut(s)	241, 412, 578, 580
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	2 cut(s)	141, 161
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	8 cut(s)	145, 150, 228, 305, 454, 517, 561, 586
MboI	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	2 cut(s)	143, 303
MhlI	GDGCHC	4 cut(s)	56, 80, 97, 324
MluCI	AATT	1 cut(s)	631
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	6 cut(s)	116, 281, 317, 484, 550, 568
MseI	TTAA	2 cut(s)	18, 614
MslI	CAYNNNNRTG	2 cut(s)	108, 288
MspR9I	CCNGG	3 cut(s)	23, 82, 595
Mva1269I	GAATGC	2 cut(s)	364, 607
MvaI	CCWGG	3 cut(s)	23, 82, 595
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
NlaIII	CATG	7 cut(s)	179, 287, 335, 375, 515, 530, 646
NlaIV	GGNNCC	2 cut(s)	305, 546
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	2 cut(s)	375, 530
PciI	ACATGT	1 cut(s)	371
PctI	GAATGC	2 cut(s)	364, 607
PfeI	GAWTC	2 cut(s)	100, 470
Ppu21I	YACGTR	1 cut(s)	658
PscI	ACATGT	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	21, 80, 593
PspGI	CCWGG	3 cut(s)	21, 80, 593
PspN4I	GGNNCC	2 cut(s)	305, 546
PspPI	GGNCC	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	143, 303
RsaI	GTAC	3 cut(s)	221, 262, 466
RsaNI	GTAC	3 cut(s)	220, 261, 465
RseI	CAYNNNNRTG	2 cut(s)	108, 288
SaqAI	TTAA	2 cut(s)	18, 614
Sau3AI	GATC	8 cut(s)	143, 148, 226, 303, 452, 515, 559, 584
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	3 cut(s)	23, 82, 595
SduI	GDGCHC	4 cut(s)	56, 80, 97, 324
SetI	ASST	9 cut(s)	24, 59, 108, 139, 190, 196, 341, 448, 660
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	4 cut(s)	241, 412, 578, 580
SfcI	CTRYAG	2 cut(s)	189, 195
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	108, 288
Sse9I	AATT	1 cut(s)	631
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	2 cut(s)	141, 161
StyD4I	CCNGG	3 cut(s)	21, 80, 593
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	34, 265, 536
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	1 cut(s)	451
TasI	AATT	1 cut(s)	631
TatI	WGTACW	2 cut(s)	219, 260
TfiI	GAWTC	2 cut(s)	100, 470
Tru1I	TTAA	2 cut(s)	18, 614
Tru9I	TTAA	2 cut(s)	18, 614
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	52, 306, 347
TspRI	CASTG	1 cut(s)	54
VneI	GTGCAC	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	544
XapI	RAATTY	1 cut(s)	631
XbaI	TCTAGA	2 cut(s)	140, 160
XceI	RCATGY	2 cut(s)	375, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XspI	CTAG	2 cut(s)	141, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.