Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013709

Physical Location & Seq

Genomic Coordinates Forward (+)

6148236 .. 6153120

Gene Structure 4885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATATCTTCAGGGATCAACCTGGTGATGACTGTGATTGGTTTCGCGGTGAGCACCATGTTCATCGTCTTTGTCTGCACCAGGCTTGTTTGTGCTCGCATTCACCTCAATGTTTCCAGACGCTCCTTCCCCACAGCTTCCAGATCCGATCTCAGTATTCTAGAACGCGGTTTACATGGCGTTGAACCTGTAGCTGTAGCCAAATTTCCGATAAAGAAGTACAATGATCCGTTTTTTTCAGCCGTGGAAGATGCTCAATGTACAGTTTGCCTCGCAGAATACCATGGCGATGATGTATTGCGCATCCTCCCATATTGTGGGCACTCTTTCCATGTGACCTGTATAGACATATGGCTTCATCAGCATTCCACATGTCCTGTATGTAGAATATCATTGCGGGAGCTTCCTGAGAGAAAACGTCGTTTGCAACCCTTGTTCAGTTCAGCTATTCGATCTCATTATGGTACAGAATCCTTTGACATCCATTCTTATCGCTATCCTTTGAACAATCATGGATCAAGAACGCATGCCAACCCTAGTATGGACCCCATTCAAGAGGATCACATAGCATCTGAGGGTGATGGAGCAGATGCCAGGGAGAATGTCTTGCCCTTAAATGAGAGTATTCGGAATTCTAAGGACATGGAAAACAAGCATGTAGAGAGCCCATCAAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.44

Weight (kDa)

6.66

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	86 - 129	1e-13	Ring finger domain
zf-rbx1	PF12678	86 - 129	9.3e-09	RING-H2 zinc finger domain
zf-RING_11	PF17123	86 - 115	2.2e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	86 - 128	1.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	86 - 131	3.5e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-C3HC4	PF00097	87 - 128	7.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950 FvH4_7g13140 FvH4_7g13140
malus_domestica	MD01G1051600.v1.1 MD07G1128400.v1.1
prunus_persica	Prupe.2G154700_v2.0.a1
pyrus_communis	pycom01g07620 pycom07g12420
rosa_chinensis	RchiOBHm_Chr1g0352271
rosa_laevigata	RLG00000028345
rosa_multiflora	Rmu_sc0003774.1_g000003
rosa_roxburghii	Rroxscaffold_4G00303050
rosa_rugosa	Rorug01G0226300
rosa_samantha	Rh1AG240700 Rh1BG211600 Rh1CG224500 Rh1DG238000
rosa_wichuraiana	Rw1G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccII	CGCG	2 cut(s)	47, 168
AciI	CCGC	3 cut(s)	47, 168, 397
AclWI	GGATC	5 cut(s)	23, 138, 221, 523, 567
AcsI	RAATTY	2 cut(s)	203, 631
AfaI	GTAC	3 cut(s)	221, 262, 466
AfiI	CCNNNNNNNGG	2 cut(s)	317, 541
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	185, 505, 554
AjnI	CCWGG	3 cut(s)	21, 80, 593
AluBI	AGCT	4 cut(s)	137, 194, 403, 446
AluI	AGCT	4 cut(s)	137, 194, 403, 446
Alw21I	GWGCWC	2 cut(s)	56, 97
AlwI	GGATC	5 cut(s)	23, 138, 221, 523, 567
ApoI	RAATTY	2 cut(s)	203, 631
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	4 cut(s)	37, 61, 95, 590
AvaII	GGWCC	1 cut(s)	544
BaeGI	GKGCMC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	668
Bbv12I	GWGCWC	2 cut(s)	56, 97
BccI	CCATC	2 cut(s)	575, 676
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	3 cut(s)	23, 82, 595
BfaI	CTAG	2 cut(s)	161, 537
BfmI	CTRYAG	2 cut(s)	189, 195
Bme1390I	CCNGG	3 cut(s)	23, 82, 595
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	3 cut(s)	23, 82, 595
BmsI	GCATC	4 cut(s)	241, 312, 578, 580
BsaJI	CCNNGG	3 cut(s)	243, 283, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 541
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	23, 82, 595
BseDI	CCNNGG	3 cut(s)	243, 283, 594
BseGI	GGATG	2 cut(s)	303, 480
BseLI	CCNNNNNNNGG	2 cut(s)	317, 541
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	166, 399, 564
BseSI	GKGCMC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	2 cut(s)	47, 168
BsiHKAI	GWGCWC	2 cut(s)	56, 97
BslI	CCNNNNNNNGG	2 cut(s)	317, 541
BsmI	GAATGC	2 cut(s)	99, 364
Bsp1286I	GDGCHC	4 cut(s)	56, 97, 324, 668
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	3 cut(s)	47, 168, 397
BspCNI	CTCAG	3 cut(s)	165, 400, 565
BspFNI	CGCG	2 cut(s)	47, 168
BspLI	GGNNCC	1 cut(s)	546
BspPI	GGATC	5 cut(s)	23, 138, 221, 523, 567
BsrDI	GCAATG	1 cut(s)	392
BsrGI	TGTACA	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	243, 283, 594
BssMI	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	3 cut(s)	23, 82, 595
Bst4CI	ACNGT	2 cut(s)	34, 265
BstAUI	TGTACA	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	97, 528
BstDEI	CTNAG	4 cut(s)	152, 408, 573, 636
BstDSI	CCRYGG	2 cut(s)	243, 283
BstF5I	GGATG	2 cut(s)	303, 480
BstFNI	CGCG	2 cut(s)	47, 168
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	7 cut(s)	18, 146, 151, 229, 455, 518, 562
BstMBI	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNI	CCWGG	3 cut(s)	23, 82, 595
BstNSI	RCATGY	3 cut(s)	375, 530, 659
BstSCI	CCNGG	3 cut(s)	21, 80, 593
BstSFI	CTRYAG	2 cut(s)	189, 195
BstSLI	GKGCMC	1 cut(s)	324
BstUI	CGCG	2 cut(s)	47, 168
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	243, 283
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	303, 480
Cac8I	GCNNGC	2 cut(s)	97, 528
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	220, 261, 465
CviAII	CATG	9 cut(s)	58, 176, 284, 332, 372, 512, 527, 643, 656
CviJI	RGCY	9 cut(s)	85, 137, 194, 200, 242, 355, 403, 446, 666
CviKI_1	RGCY	9 cut(s)	85, 137, 194, 200, 242, 355, 403, 446, 666
CviQI	GTAC	3 cut(s)	220, 261, 465
DdeI	CTNAG	4 cut(s)	152, 408, 573, 636
DpnI	GATC	7 cut(s)	17, 145, 150, 228, 454, 517, 561
DpnII	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	668
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	631
EcoRII	CCWGG	3 cut(s)	21, 80, 593
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	668
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	9 cut(s)	61, 179, 287, 335, 375, 515, 530, 646, 659
FatI	CATG	9 cut(s)	57, 175, 283, 331, 371, 511, 526, 642, 655
FauI	CCCGC	1 cut(s)	390
FauNDI	CATATG	1 cut(s)	350
FokI	GGATG	2 cut(s)	290, 467
FriOI	GRGCYC	1 cut(s)	668
FspBI	CTAG	2 cut(s)	161, 537
FspI	TGCGCA	1 cut(s)	302
GlaI	GCGC	1 cut(s)	302
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	9 cut(s)	61, 179, 287, 335, 375, 515, 530, 646, 659
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	470
HphI	GGTGA	4 cut(s)	37, 61, 95, 590
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	4 cut(s)	148, 210, 574, 630
Hpy188III	TCNNGA	6 cut(s)	117, 141, 161, 407, 519, 554
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	34, 265
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	78, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	4 cut(s)	152, 408, 573, 636
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	9 cut(s)	61, 179, 287, 335, 375, 515, 530, 646, 659
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
LmnI	GCTCC	3 cut(s)	128, 400, 584
LweI	GCATC	4 cut(s)	241, 312, 578, 580
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	2 cut(s)	161, 537
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	7 cut(s)	17, 145, 150, 228, 454, 517, 561
MboI	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	4 cut(s)	56, 97, 324, 668
MluCI	AATT	2 cut(s)	203, 631
MnlI	CCTC	5 cut(s)	116, 281, 317, 550, 568
MseI	TTAA	2 cut(s)	614, 679
MslI	CAYNNNNRTG	2 cut(s)	108, 288
MspR9I	CCNGG	3 cut(s)	23, 82, 595
Mva1269I	GAATGC	2 cut(s)	99, 364
MvaI	CCWGG	3 cut(s)	23, 82, 595
MvnI	CGCG	2 cut(s)	47, 168
MwoI	GCNNNNNNNGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
NlaIII	CATG	9 cut(s)	61, 179, 287, 335, 375, 515, 530, 646, 659
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	334
NsbI	TGCGCA	1 cut(s)	302
NspI	RCATGY	3 cut(s)	375, 530, 659
PaeI	GCATGC	1 cut(s)	530
PciI	ACATGT	1 cut(s)	371
PctI	GAATGC	2 cut(s)	99, 364
PfeI	GAWTC	1 cut(s)	470
PflMI	CCANNNNNTGG	1 cut(s)	317
PscI	ACATGT	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	21, 80, 593
PspGI	CCWGG	3 cut(s)	21, 80, 593
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	544
PsrI	GAACNNNNNNTAC	2 cut(s)	156, 188
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	3 cut(s)	221, 262, 466
RsaNI	GTAC	3 cut(s)	220, 261, 465
RseI	CAYNNNNRTG	2 cut(s)	108, 288
SaqAI	TTAA	2 cut(s)	614, 679
Sau3AI	GATC	7 cut(s)	15, 143, 148, 226, 452, 515, 559
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	3 cut(s)	23, 82, 595
SduI	GDGCHC	4 cut(s)	56, 97, 324, 668
SetI	ASST	9 cut(s)	24, 108, 139, 190, 196, 341, 405, 421, 448
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	4 cut(s)	241, 312, 578, 580
SfcI	CTRYAG	2 cut(s)	189, 195
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	108, 288
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	2 cut(s)	203, 631
SsiI	CCGC	3 cut(s)	47, 168, 397
SspMI	CTAG	2 cut(s)	161, 537
StyD4I	CCNGG	3 cut(s)	21, 80, 593
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	34, 265
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	1 cut(s)	451
TasI	AATT	2 cut(s)	203, 631
TatI	WGTACW	2 cut(s)	219, 260
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	614, 679
Tru9I	TTAA	2 cut(s)	614, 679
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	52, 347
TspGWI	ACGGA	1 cut(s)	219
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	544
XapI	RAATTY	2 cut(s)	203, 631
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	3 cut(s)	375, 530, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XspI	CTAG	2 cut(s)	161, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.