MD07G1128400.v1.1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013709
Physical Location & Seq
Forward (+)
18372102 .. 18374984
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1128400.v1.1.491

Sequence Viewer

Length: 615 bp
ATGATGGGTTCGGTTATGAACTTGATTACTACTGTGATAGGTTTTGGTATGAGTGCAACATTTATTGTGTTTGTTTGCACAAGAATCATCTTTGGGAGGCTGCGAGGTAGAGAATCGAGGCCTATGTTCGAGATTGAATCAAGGGTTGATCTTGAGCAGCCAGAGCATCAGGTTAGTGGCCTTGAACAAATTGTGGTTTCTGCAATCCCTACGATGAAGTACGATCAAGAGGCTTTCAGTTCCTTAGAAGATGCACAGTGCTCAATCTGTTTGGGGGAGTACCAAGAGAAAGAAGTACTGCGAATCATGCCCAAATGTGGCCACAGTTTTCATCTGTCTTGCATCGATACATGGCTGAGGAAACAGTCTACTTGCCCAGTTTGCCGTTTACCATTAAAAGAATCCCTTGGAACAAAACATGTGAGGTCAGCAACGTTTAGCGTGGCTCGATCTTTTGATGAGTCTGAGATTTCAACCGAACATTCTCAGCAGTGGCTATTGCCTGGCGCCACTGAGCATTCGGTAGGCAACATTAGCAACCAAGGGCATTTAGATTCTGCTCCAGGAAACCCTTCCGAACCGACCCCATCTAGAGAACCAGAAACAAGGCAATGA

Protein Analysis

205

Amino Acids

22.79

Weight (kDa)

5.65

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 85 - 129 8.6e-11 RING-H2 zinc finger domain
zf-RING_2 PF13639 86 - 129 1.4e-15 Ring finger domain
zf-RING_11 PF17123 86 - 115 2.2e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 86 - 128 5.6e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 86 - 129 9.6e-07 zinc-RING finger domain
zf-C3HC4 PF00097 87 - 128 1.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 87 - 126 1.4e-08 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013709)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05950 FvH4_7g13140 FvH4_7g13140
malus_domestica MD01G1051600.v1.1 MD07G1128400.v1.1
prunus_persica Prupe.2G154700_v2.0.a1
pyrus_communis pycom01g07620 pycom07g12420
rosa_chinensis RchiOBHm_Chr1g0352271
rosa_laevigata RLG00000028345
rosa_multiflora Rmu_sc0003774.1_g000003
rosa_roxburghii Rroxscaffold_4G00303050
rosa_rugosa Rorug01G0226300
rosa_samantha Rh1AG240700 Rh1BG211600 Rh1CG224500 Rh1DG238000
rosa_wichuraiana Rw1G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 506
AccI GTMKAC 1 cut(s) 368
AclI AACGTT 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 3 cut(s) 221, 281, 297
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 3 cut(s) 137, 185, 474
AjnI CCWGG 2 cut(s) 502, 562
Alw21I GWGCWC 1 cut(s) 263
AoxI GGCC 3 cut(s) 119, 178, 319
ApeKI GCWGC 2 cut(s) 100, 157
Asp700I GAANNNNTTC 1 cut(s) 571
AspLEI GCGC 1 cut(s) 509
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 263
BbvCI CCTCAGC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 87, 169
BccI CCATC 1 cut(s) 595
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 2 cut(s) 504, 564
BfaI CTAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 510
BisI GCNGC 2 cut(s) 101, 158
BlsI GCNGC 2 cut(s) 102, 159
BmcAI AGTACT 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 504, 564
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 2 cut(s) 504, 564
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 3 cut(s) 175, 241, 351
BmuI ACTGGG 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 546
Bpu10I CCTNAGC 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 173
Bsa29I ATCGAT 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 406, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 2 cut(s) 504, 564
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 406, 541
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 4 cut(s) 347, 456, 500, 504
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 87, 169
BshFI GGCC 3 cut(s) 121, 180, 321
BshNI GGYRCC 1 cut(s) 506
BshVI ATCGAT 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 317
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 3 cut(s) 121, 180, 321
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 3 cut(s) 148, 223, 449
BspANI GGCC 3 cut(s) 121, 180, 321
BspCNI CTCAG 4 cut(s) 348, 457, 499, 505
BspDI ATCGAT 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 506
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 406, 541
BssMI GATC 3 cut(s) 148, 223, 449
BssNI GRCGYC 1 cut(s) 507
BssT1I CCWWGG 2 cut(s) 406, 541
Bst2UI CCWGG 2 cut(s) 504, 564
Bst4CI ACNGT 4 cut(s) 34, 258, 326, 366
BstACI GRCGYC 1 cut(s) 507
BstDEI CTNAG 5 cut(s) 244, 356, 465, 486, 513
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 3 cut(s) 151, 226, 452
BstMBI GATC 3 cut(s) 148, 223, 449
BstMWI GCNNNNNNNGC 4 cut(s) 163, 307, 381, 534
BstNI CCWGG 2 cut(s) 504, 564
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 502, 562
BstV1I GCAGC 2 cut(s) 87, 169
Bsu15I ATCGAT 1 cut(s) 345
BsuRI GGCC 3 cut(s) 121, 180, 321
BsuTUI ATCGAT 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 3 cut(s) 263, 497, 510
CfoI GCGC 1 cut(s) 509
ClaI ATCGAT 1 cut(s) 345
Csp6I GTAC 3 cut(s) 220, 280, 296
CviAII CATG 3 cut(s) 307, 351, 419
CviJI RGCY 9 cut(s) 100, 121, 160, 180, 233, 321, 355, 446, 496
CviKI_1 RGCY 9 cut(s) 100, 121, 160, 180, 233, 321, 355, 446, 496
CviQI GTAC 3 cut(s) 220, 280, 296
DdeI CTNAG 5 cut(s) 244, 356, 465, 486, 513
DinI GGCGCC 1 cut(s) 508
DpnI GATC 3 cut(s) 150, 225, 451
DpnII GATC 3 cut(s) 148, 223, 449
EaeI YGGCCR 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 406, 541
Eco147I AGGCCT 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 502, 562
EcoT14I CCWWGG 2 cut(s) 406, 541
EgeI GGCGCC 1 cut(s) 508
EheI GGCGCC 1 cut(s) 508
ErhI CCWWGG 2 cut(s) 406, 541
FaeI CATG 3 cut(s) 310, 354, 422
FaiI YATR 6 cut(s) 17, 50, 125, 308, 352, 420
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 3 cut(s) 306, 350, 418
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 2 cut(s) 101, 158
Fsp4HI GCNGC 2 cut(s) 101, 158
FspBI CTAG 1 cut(s) 591
GlaI GCGC 1 cut(s) 508
GluI GCNGC 2 cut(s) 101, 158
GsuI CTGGAG 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 3 cut(s) 121, 180, 321
HhaI GCGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 3 cut(s) 310, 354, 422
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 7 cut(s) 84, 113, 137, 303, 401, 461, 554
Hpy166II GTNNAC 2 cut(s) 369, 389
Hpy188I TCNGA 2 cut(s) 466, 577
Hpy188III TCNNGA 4 cut(s) 130, 152, 227, 591
Hpy8I GTNNAC 2 cut(s) 369, 389
HpyAV CCTTC 1 cut(s) 582
HpyCH4III ACNGT 4 cut(s) 34, 258, 326, 366
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 5 cut(s) 56, 78, 203, 254, 342
HpyF10VI GCNNNNNNNGC 4 cut(s) 163, 307, 381, 534
HpyF3I CTNAG 5 cut(s) 244, 356, 465, 486, 513
HpySE526I ACGT 1 cut(s) 434
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 3 cut(s) 310, 354, 422
HspAI GCGC 1 cut(s) 507
KasI GGCGCC 1 cut(s) 506
Kzo9I GATC 3 cut(s) 148, 223, 449
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 7 cut(s) 155, 174, 390, 489, 516, 549, 576
Lsp1109I GCAGC 2 cut(s) 87, 169
LweI GCATC 3 cut(s) 175, 241, 351
MaeI CTAG 1 cut(s) 591
MaeII ACGT 1 cut(s) 434
MalI GATC 3 cut(s) 150, 225, 451
MboI GATC 3 cut(s) 148, 223, 449
MboII GAAGA 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 263
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 1 cut(s) 189
MluNI TGGCCA 1 cut(s) 321
Mly113I GGCGCC 1 cut(s) 507
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 6 cut(s) 90, 98, 111, 223, 351, 417
Mox20I TGGCCA 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 571
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 395
Msp20I TGGCCA 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 504, 564
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 2 cut(s) 504, 564
MwoI GCNNNNNNNGC 4 cut(s) 163, 307, 381, 534
NarI GGCGCC 1 cut(s) 507
NdeII GATC 3 cut(s) 148, 223, 449
NlaIII CATG 3 cut(s) 310, 354, 422
NlaIV GGNNCC 1 cut(s) 508
NspI RCATGY 1 cut(s) 422
PceI AGGCCT 1 cut(s) 121
PciI ACATGT 1 cut(s) 418
PctI GAATGC 1 cut(s) 517
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 6 cut(s) 84, 113, 137, 303, 401, 554
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 2 cut(s) 102, 159
PleI GAGTC 1 cut(s) 469
PluTI GGCGCC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 469
PscI ACATGT 1 cut(s) 418
Psp1406I AACGTT 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 502, 562
PspGI CCWGG 2 cut(s) 502, 562
PspN4I GGNNCC 1 cut(s) 508
RsaI GTAC 3 cut(s) 221, 281, 297
RsaNI GTAC 3 cut(s) 220, 280, 296
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 2 cut(s) 101, 158
Sau3AI GATC 3 cut(s) 148, 223, 449
ScaI AGTACT 1 cut(s) 297
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 2 cut(s) 504, 564
SduI GDGCHC 1 cut(s) 263
SetI ASST 5 cut(s) 43, 109, 174, 428, 437
SfaNI GCATC 3 cut(s) 175, 241, 351
SfoI GGCGCC 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 189
SseBI AGGCCT 1 cut(s) 121
SspDI GGCGCC 1 cut(s) 506
SspMI CTAG 1 cut(s) 591
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 502, 562
StyI CCWWGG 2 cut(s) 406, 541
TaaI ACNGT 4 cut(s) 34, 258, 326, 366
TaiI ACGT 1 cut(s) 437
TaqI TCGA 4 cut(s) 116, 129, 345, 448
TasI AATT 1 cut(s) 189
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 6 cut(s) 84, 113, 137, 303, 401, 554
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 3 cut(s) 263, 497, 517
TseI GCWGC 2 cut(s) 100, 157
TspDTI ATGAA 3 cut(s) 32, 230, 320
TspRI CASTG 3 cut(s) 263, 497, 517
XbaI TCTAGA 1 cut(s) 590
XceI RCATGY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 1 cut(s) 591
ZrmI AGTACT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.