Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013709

Physical Location & Seq

Genomic Coordinates Reverse (-)

11842611 .. 11845130

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g13140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATGGGGTCGGGTATGAACTTGATTACTACTGTGATTGGTTTTGGTATGAGTGCAACATTCATTATATTTGTATGCACAAGAATCATTTGTGGGAGGCTGAGAGGTGTTGAATCAAGGCCTATGTTTGAGGTTGAATCAAGAACTGATCTTGAGCAGCCGGAGAATCGGTCTAATGGCCTTGAACAAGTTGTGGTTGCTGCAATCCCAACCATGAAGTATGATCAGGAGGCTTTCAGTTCAGTGGAAGATGCACAGTGTTCAATATGTCTTGGGGAGTACCAGGAGAAAGAAATACTGAGAATTATGCCAAAATGTGGCCACAGTTTTCATCTCTCATGCATTGATATATGGCTGAGGAAACAGTCTACCTGTCCAGTTTGCCGTTTACCCTTGAAAGAATCTTTCGGCCCAAAACATGTGAGATCAGCAACGTTTACCGTGGCTCGATCTTTTGATGATTCTGAGAACATTCAAACCCACGAACATTCTCAGCAGTGGTTATTACCGAATTCAGCAAGCAACAATGTTAGCAACCAAGGGCGGTTAGAACCTGCTCCTGGAAACCCCTCGGAACCTACTCAATCGAGAGAACCGGACACAAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

204

Amino Acids

22.76

Weight (kDa)

5.88

Isoelectric Point (pI)

64.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	85 - 129	4e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	86 - 129	7.2e-15	Ring finger domain
zf-RING_11	PF17123	86 - 115	1.7e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	86 - 128	6.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	86 - 129	4e-06	zinc-RING finger domain
zf-C3HC4	PF00097	87 - 128	1.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	87 - 126	1.6e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950 FvH4_7g13140 FvH4_7g13140
malus_domestica	MD01G1051600.v1.1 MD07G1128400.v1.1
prunus_persica	Prupe.2G154700_v2.0.a1
pyrus_communis	pycom01g07620 pycom07g12420
rosa_chinensis	RchiOBHm_Chr1g0352271
rosa_laevigata	RLG00000028345
rosa_multiflora	Rmu_sc0003774.1_g000003
rosa_roxburghii	Rroxscaffold_4G00303050
rosa_rugosa	Rorug01G0226300
rosa_samantha	Rh1AG240700 Rh1BG211600 Rh1CG224500 Rh1DG238000
rosa_wichuraiana	Rw1G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	368
AciI	CCGC	1 cut(s)	544
AclI	AACGTT	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	317, 560
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	6 cut(s)	113, 137, 185, 264, 397, 476
AjnI	CCWGG	2 cut(s)	282, 559
AoxI	GGCC	4 cut(s)	119, 178, 319, 409
ApeKI	GCWGC	2 cut(s)	157, 200
ApoI	RAATTY	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	169, 187
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	284, 561
BclI	TGATCA	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	2 cut(s)	158, 201
BlsI	GCNGC	2 cut(s)	159, 202
Bme1390I	CCNGG	2 cut(s)	284, 561
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	284, 561
BmsI	GCATC	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	441, 538, 570
BsaWI	WCCGGW	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 560
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	2 cut(s)	284, 561
BseDI	CCNNGG	3 cut(s)	441, 538, 570
BseLI	CCNNNNNNNGG	2 cut(s)	317, 560
BseMII	CTCAG	5 cut(s)	92, 290, 347, 456, 506
BseNI	ACTGG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	169, 187
BshFI	GGCC	4 cut(s)	121, 180, 321, 411
BsiSI	CCGG	2 cut(s)	161, 596
BslI	CCNNNNNNNGG	2 cut(s)	317, 560
BsnI	GGCC	4 cut(s)	121, 180, 321, 411
Bsp143I	GATC	4 cut(s)	148, 223, 425, 449
BspACI	CCGC	1 cut(s)	544
BspANI	GGCC	4 cut(s)	121, 180, 321, 411
BspCNI	CTCAG	5 cut(s)	93, 291, 348, 457, 505
BspLI	GGNNCC	1 cut(s)	576
BspMI	ACCTGC	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	3 cut(s)	441, 538, 570
BssMI	GATC	4 cut(s)	148, 223, 425, 449
BssT1I	CCWWGG	1 cut(s)	538
Bst2UI	CCWGG	2 cut(s)	284, 561
Bst4CI	ACNGT	5 cut(s)	34, 258, 326, 366, 442
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	5 cut(s)	101, 299, 356, 465, 492
BstDSI	CCRYGG	1 cut(s)	441
BstKTI	GATC	4 cut(s)	151, 226, 428, 452
BstMBI	GATC	4 cut(s)	148, 223, 425, 449
BstNI	CCWGG	2 cut(s)	284, 561
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	282, 559
BstV1I	GCAGC	2 cut(s)	169, 187
BsuRI	GGCC	4 cut(s)	121, 180, 321, 411
BtgI	CCRYGG	1 cut(s)	441
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	3 cut(s)	249, 263, 503
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	214, 339, 419
CviJI	RGCY	9 cut(s)	100, 121, 160, 180, 233, 321, 355, 411, 446
CviKI_1	RGCY	9 cut(s)	100, 121, 160, 180, 233, 321, 355, 411, 446
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	5 cut(s)	101, 299, 356, 465, 492
DpnI	GATC	4 cut(s)	150, 225, 427, 451
DpnII	GATC	4 cut(s)	148, 223, 425, 449
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	538
Eco147I	AGGCCT	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	282, 559
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	3 cut(s)	217, 342, 422
FatI	CATG	3 cut(s)	213, 338, 418
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	2 cut(s)	158, 201
Fsp4HI	GCNGC	2 cut(s)	158, 201
GluI	GCNGC	2 cut(s)	158, 201
HaeIII	GGCC	4 cut(s)	121, 180, 321, 411
HapII	CCGG	2 cut(s)	161, 596
Hin1II	CATG	3 cut(s)	217, 342, 422
HinfI	GANTC	6 cut(s)	84, 113, 137, 166, 401, 461
HpaII	CCGG	2 cut(s)	161, 596
Hpy166II	GTNNAC	3 cut(s)	369, 389, 438
Hpy188I	TCNGA	2 cut(s)	466, 574
Hpy188III	TCNNGA	4 cut(s)	141, 152, 227, 588
Hpy8I	GTNNAC	3 cut(s)	369, 389, 438
HpyCH4III	ACNGT	5 cut(s)	34, 258, 326, 366, 442
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	5 cut(s)	56, 78, 203, 254, 342
HpyF3I	CTNAG	5 cut(s)	101, 299, 356, 465, 492
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	3 cut(s)	217, 342, 422
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	148, 223, 425, 449
LmnI	GCTCC	1 cut(s)	562
LpnPI	CCDG	9 cut(s)	174, 212, 269, 296, 385, 390, 546, 567, 573
Lsp1109I	GCAGC	2 cut(s)	169, 187
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	434
MalI	GATC	4 cut(s)	150, 225, 427, 451
MboI	GATC	4 cut(s)	148, 223, 425, 449
MboII	GAAGA	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	2 cut(s)	303, 511
MluNI	TGGCCA	1 cut(s)	321
MnlI	CCTC	6 cut(s)	90, 98, 124, 223, 351, 580
Mox20I	TGGCCA	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	321
MspI	CCGG	2 cut(s)	161, 596
MspR9I	CCNGG	2 cut(s)	284, 561
MvaI	CCWGG	2 cut(s)	284, 561
NdeII	GATC	4 cut(s)	148, 223, 425, 449
NlaIII	CATG	3 cut(s)	217, 342, 422
NlaIV	GGNNCC	1 cut(s)	576
NsiI	ATGCAT	1 cut(s)	344
NspI	RCATGY	1 cut(s)	422
PceI	AGGCCT	1 cut(s)	121
PciI	ACATGT	1 cut(s)	418
PfeI	GAWTC	6 cut(s)	84, 113, 137, 166, 401, 461
PflMI	CCANNNNNTGG	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	2 cut(s)	159, 202
PscI	ACATGT	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	434
Psp6I	CCWGG	2 cut(s)	282, 559
PspGI	CCWGG	2 cut(s)	282, 559
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SatI	GCNGC	2 cut(s)	158, 201
Sau3AI	GATC	4 cut(s)	148, 223, 425, 449
Sau96I	GGNCC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	284, 561
SetI	ASST	6 cut(s)	109, 135, 374, 437, 556, 580
SfaNI	GCATC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	303, 511
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	544
StuI	AGGCCT	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	282, 559
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	5 cut(s)	34, 258, 326, 366, 442
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	448, 587
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	303, 511
TfiI	GAWTC	6 cut(s)	84, 113, 137, 166, 401, 461
TscAI	CASTG	3 cut(s)	249, 263, 503
TseI	GCWGC	2 cut(s)	157, 200
TspDTI	ATGAA	4 cut(s)	32, 52, 230, 320
TspRI	CASTG	3 cut(s)	249, 263, 503
Van91I	CCANNNNNTGG	1 cut(s)	317
XapI	RAATTY	1 cut(s)	511
XceI	RCATGY	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	368
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.