Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013709

Physical Location & Seq

Genomic Coordinates Forward (+)

15580276 .. 15580807

Gene Structure 532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1051600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAGTACGATCAAAAGGCTTTCAGTTCCTTAGAAGATGCGCAGTGCTCAATATGTTTGGGGGAGTACCAGGAGAAAGAAGTACTGCGAATCATGCCCAAATGTGGCCACAGTTTTCATCTCTCTTGCATTGATACATGGCTGAGGAAACAATCTACCTGCCCAATTTGCCGTTTACCATTAAAAGAATCCCTCGGAACAAAACATGTGAGGTCGGCAACATTTAGCGTGGCTCGATCTTTTGAAGAGTCTGAGATTTCAACTCAACATTCTCATCAGTGGCTATTACCTGGCACCACTGAGCGTTCAGCAGGAAACGTTAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

110

Amino Acids

12.35

Weight (kDa)

7.65

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	14 - 58	2.5e-11	RING-H2 zinc finger domain
zf-RING_2	PF13639	15 - 58	4.4e-16	Ring finger domain
zf-RING_11	PF17123	15 - 44	7.9e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	15 - 57	1.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	15 - 58	2.4e-07	zinc-RING finger domain
zf-C3HC4	PF00097	16 - 57	9.9e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	16 - 55	4.2e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950 FvH4_7g13140 FvH4_7g13140
malus_domestica	MD01G1051600.v1.1 MD07G1128400.v1.1
prunus_persica	Prupe.2G154700_v2.0.a1
pyrus_communis	pycom01g07620 pycom07g12420
rosa_chinensis	RchiOBHm_Chr1g0352271
rosa_laevigata	RLG00000028345
rosa_multiflora	Rmu_sc0003774.1_g000003
rosa_roxburghii	Rroxscaffold_4G00303050
rosa_rugosa	Rorug01G0226300
rosa_samantha	Rh1AG240700 Rh1BG211600 Rh1CG224500 Rh1DG238000
rosa_wichuraiana	Rw1G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	293
AclI	AACGTT	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	106
AfaI	GTAC	3 cut(s)	8, 68, 84
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	245, 261
AjnI	CCWGG	2 cut(s)	69, 289
Alw21I	GWGCWC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	156
BciT130I	CCWGG	2 cut(s)	71, 291
BfuAI	ACCTGC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	71, 291
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	2 cut(s)	71, 291
BmsI	GCATC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	71, 291
BseDI	CCNNGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	3 cut(s)	134, 243, 291
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	10, 236
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	3 cut(s)	135, 244, 292
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	10, 236
Bst2UI	CCWGG	2 cut(s)	71, 291
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	240
BstDEI	CTNAG	4 cut(s)	31, 143, 252, 300
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	13, 239
BstMBI	GATC	2 cut(s)	10, 236
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 168
BstNI	CCWGG	2 cut(s)	71, 291
BstNSI	RCATGY	1 cut(s)	209
BstSCI	CCNGG	2 cut(s)	69, 289
BsuRI	GGCC	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	3 cut(s)	50, 284, 297
BveI	ACCTGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	43
Csp6I	GTAC	3 cut(s)	7, 67, 83
CviAII	CATG	3 cut(s)	94, 138, 206
CviJI	RGCY	5 cut(s)	20, 108, 142, 233, 283
CviKI_1	RGCY	5 cut(s)	20, 108, 142, 233, 283
CviQI	GTAC	3 cut(s)	7, 67, 83
DdeI	CTNAG	4 cut(s)	31, 143, 252, 300
DpnI	GATC	2 cut(s)	12, 238
DpnII	GATC	2 cut(s)	10, 236
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	69, 289
FaeI	CATG	3 cut(s)	97, 141, 209
FaiI	YATR	4 cut(s)	55, 95, 139, 207
FatI	CATG	3 cut(s)	93, 137, 205
FspI	TGCGCA	1 cut(s)	42
GlaI	GCGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	97, 141, 209
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	3 cut(s)	90, 188, 248
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	197, 253
Hpy8I	GTNNAC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 168
HpyF3I	CTNAG	4 cut(s)	31, 143, 252, 300
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	97, 141, 209
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	10, 236
LpnPI	CCDG	6 cut(s)	56, 83, 172, 276, 297, 303
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	318
MalI	GATC	2 cut(s)	12, 238
MboI	GATC	2 cut(s)	10, 236
MboII	GAAGA	2 cut(s)	47, 257
MhlI	GDGCHC	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	1 cut(s)	165
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	138, 203, 204
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	71, 291
MvaI	CCWGG	2 cut(s)	71, 291
MwoI	GCNNNNNNNGC	2 cut(s)	94, 168
NdeII	GATC	2 cut(s)	10, 236
NlaIII	CATG	3 cut(s)	97, 141, 209
NlaIV	GGNNCC	1 cut(s)	295
NsbI	TGCGCA	1 cut(s)	42
NspI	RCATGY	1 cut(s)	209
PciI	ACATGT	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	90, 188
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PscI	ACATGT	1 cut(s)	205
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	69, 289
PspGI	CCWGG	2 cut(s)	69, 289
PspN4I	GGNNCC	1 cut(s)	295
RsaI	GTAC	3 cut(s)	8, 68, 84
RsaNI	GTAC	3 cut(s)	7, 67, 83
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	10, 236
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	71, 291
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	4 cut(s)	161, 215, 292, 321
SfaNI	GCATC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	69, 289
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	165
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	90, 188
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	3 cut(s)	50, 284, 304
TspDTI	ATGAA	2 cut(s)	17, 107
TspRI	CASTG	3 cut(s)	50, 284, 304
XceI	RCATGY	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.