Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013709

Physical Location & Seq

Genomic Coordinates Reverse (-)

20834737 .. 20837163

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G154700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTTCGGGTATGAACTTGGTCACTACTGTTATTGGTTTTGGTATGAGTGCAACATTTATAGTATTCGTTTGCACAAGAATCATTTGTGGCAGGCTAAGAGGTGGCGAATCACGGCCTATGTTCGAGATTGAATCAAGGATTGATGTTGAGCAGCCAGAGCATCAGGCCAGTGGCCTTGAACAAGTTGTGGTTTCTGCAATCCCTACCATGAAGTTTGATCATAAAGCTTTCAGCTCCTTGGAAGATGCGCAGTGCTCAATATGCTTGGGGGAGTACCAAGAGAAAGAAGTATTGCGAATCATGCCCAAATGTGGCCACAGTTTTCATCTCTCTTGCATTGATACATGGCTGAGGAAACAGTCTACCTGTCCAGTTTGCCGTTTGCCATTAAAAGAATCCCTTGGAATAAAACATGTGAGATCAGCAACGTTTAGCATGCCTCGATCGTTTGATGATTCTGAGGTTTCAACTGAACATTCACAACTGTGGCTATTACCTGGCTCTGAGCGTTCAGCAGGTAATGTTAGCAACCAAGGGCATTCAGAATCTGCTCCTGGAAACCCCTCCGAACCGACTCCATCTAGAGAACCAGAAACAACGCCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

204

Amino Acids

22.38

Weight (kDa)

5.98

Isoelectric Point (pI)

64.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950 FvH4_7g13140 FvH4_7g13140
malus_domestica	MD01G1051600.v1.1 MD07G1128400.v1.1
prunus_persica	Prupe.2G154700_v2.0.a1
pyrus_communis	pycom01g07620 pycom07g12420
rosa_chinensis	RchiOBHm_Chr1g0352271
rosa_laevigata	RLG00000028345
rosa_multiflora	Rmu_sc0003774.1_g000003
rosa_roxburghii	Rroxscaffold_4G00303050
rosa_rugosa	Rorug01G0226300
rosa_samantha	Rh1AG240700 Rh1BG211600 Rh1CG224500 Rh1DG238000
rosa_wichuraiana	Rw1G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	365
AclI	AACGTT	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	316
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	134, 182, 471
AjnI	CCWGG	2 cut(s)	499, 556
AleI	CACNNNNGTG	1 cut(s)	487
AluBI	AGCT	2 cut(s)	230, 237
AluI	AGCT	2 cut(s)	230, 237
Alw21I	GWGCWC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	4 cut(s)	116, 168, 175, 316
ApeKI	GCWGC	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	2 cut(s)	131, 366
BciT130I	CCWGG	2 cut(s)	501, 558
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	509
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	501, 558
BmrFI	CCNGG	2 cut(s)	501, 558
BmsI	GCATC	2 cut(s)	172, 238
Bpu10I	CCTNAGC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	240, 403, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	171, 374
BseBI	CCWGG	2 cut(s)	501, 558
BseDI	CCNNGG	3 cut(s)	240, 403, 535
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	3 cut(s)	344, 453, 498
BseNI	ACTGG	2 cut(s)	171, 374
BseXI	GCAGC	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	449
BshFI	GGCC	4 cut(s)	118, 170, 177, 318
BsiEI	CGRYCG	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	4 cut(s)	118, 170, 177, 318
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	220, 422, 446
BspANI	GGCC	4 cut(s)	118, 170, 177, 318
BspCNI	CTCAG	3 cut(s)	345, 454, 499
BspMI	ACCTGC	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	171, 374
BssECI	CCNNGG	3 cut(s)	240, 403, 535
BssMI	GATC	3 cut(s)	220, 422, 446
BssT1I	CCWWGG	3 cut(s)	240, 403, 535
Bst2UI	CCWGG	2 cut(s)	501, 558
Bst4CI	ACNGT	4 cut(s)	31, 323, 363, 489
BstC8I	GCNNGC	2 cut(s)	95, 440
BstDEI	CTNAG	4 cut(s)	98, 353, 462, 507
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	3 cut(s)	223, 425, 449
BstMBI	GATC	3 cut(s)	220, 422, 446
BstMCI	CGRYCG	1 cut(s)	449
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 264, 304
BstNI	CCWGG	2 cut(s)	501, 558
BstNSI	RCATGY	2 cut(s)	419, 442
BstSCI	CCNGG	2 cut(s)	499, 556
BstV1I	GCAGC	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	118, 170, 177, 318
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	2 cut(s)	178, 260
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	95, 440
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	211, 304, 348, 416, 439
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	4 cut(s)	98, 353, 462, 507
DpnI	GATC	3 cut(s)	222, 424, 448
DpnII	GATC	3 cut(s)	220, 422, 446
EaeI	YGGCCR	1 cut(s)	316
Eco130I	CCWWGG	3 cut(s)	240, 403, 535
EcoRII	CCWGG	2 cut(s)	499, 556
EcoT14I	CCWWGG	3 cut(s)	240, 403, 535
ErhI	CCWWGG	3 cut(s)	240, 403, 535
FaeI	CATG	5 cut(s)	214, 307, 351, 419, 442
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	5 cut(s)	210, 303, 347, 415, 438
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	585
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	118, 170, 177, 318
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	5 cut(s)	214, 307, 351, 419, 442
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	8 cut(s)	81, 110, 134, 300, 398, 458, 548, 577
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	4 cut(s)	463, 508, 547, 571
Hpy188III	TCNNGA	2 cut(s)	127, 585
Hpy8I	GTNNAC	1 cut(s)	366
HpyCH4III	ACNGT	4 cut(s)	31, 323, 363, 489
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	4 cut(s)	53, 75, 200, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 264, 304
HpyF3I	CTNAG	4 cut(s)	98, 353, 462, 507
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	5 cut(s)	214, 307, 351, 419, 442
HspAI	GCGC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	220, 422, 446
LmnI	GCTCC	2 cut(s)	242, 559
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	172, 238
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	3 cut(s)	222, 424, 448
MboI	GATC	3 cut(s)	220, 422, 446
MboII	GAAGA	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	5 cut(s)	95, 348, 453, 457, 577
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	1 cut(s)	487
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	501, 558
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	2 cut(s)	501, 558
MwoI	GCNNNNNNNGC	3 cut(s)	160, 264, 304
NdeII	GATC	3 cut(s)	220, 422, 446
NlaIII	CATG	5 cut(s)	214, 307, 351, 419, 442
NmuCI	GTSAC	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	252
NspI	RCATGY	2 cut(s)	419, 442
OliI	CACNNNNGTG	1 cut(s)	487
PaeI	GCATGC	1 cut(s)	442
PciI	ACATGT	1 cut(s)	415
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	7 cut(s)	81, 110, 134, 300, 398, 458, 548
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	156
Ple19I	CGATCG	1 cut(s)	449
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	415
Psp1406I	AACGTT	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	499, 556
PspGI	CCWGG	2 cut(s)	499, 556
PstNI	CAGNNNCTG	1 cut(s)	551
PvuI	CGATCG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	3 cut(s)	220, 422, 446
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	2 cut(s)	501, 558
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	8 cut(s)	106, 232, 239, 371, 434, 468, 502, 523
SfaNI	GCATC	2 cut(s)	172, 238
SmiMI	CAYNNNNRTG	1 cut(s)	487
SphI	GCATGC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	499, 556
StyI	CCWWGG	3 cut(s)	240, 403, 535
TaaI	ACNGT	4 cut(s)	31, 323, 363, 489
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	2 cut(s)	126, 445
TfiI	GAWTC	7 cut(s)	81, 110, 134, 300, 398, 458, 548
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	2 cut(s)	178, 260
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	3 cut(s)	29, 227, 317
TspRI	CASTG	2 cut(s)	178, 260
XbaI	TCTAGA	1 cut(s)	584
XceI	RCATGY	2 cut(s)	419, 442
XmiI	GTMKAC	1 cut(s)	365
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.