Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Forward (+)

32559804 .. 32563526

Gene Structure 3723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGAATGCTTGTAACTTGTGGTTTGCTTGAATGGTTTTTGTTGGAAGTGCATGTCCAGCTTGTGTCAATTCCTGACATGTTGCTATATTTGCAGATATCTCCTGCTGAAGAAGTTATGCAACTGGTAATTCAAATGGCTGTCGAGTTGTCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTAAAAGCACCTGCCCAAGCAAGGCAAATGGGAGCACTTAGAGTTTCCATGACAAGTCCAGGACTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTTCCATTTTTTCAAGAGGTTATAATTGGAGTTATGACCAGTTGGTCTATAGGCCCTCTGGTACCTATTTGTGGTCGCTGGTTAGCCAGGTCATCCATTTTGCAAGTCTTATTGCATCCTAGTGTGCTAGACTTGGCACTGTCATCTCAGTTCTTTCCATATAGCGCGGCTGCACCTAAGAGAGTTGTCTTCCAGCATACTTTTCTTACTGCAGTCATTTGTCTTCTTTATTTTAAGGTGCCGGCGGCAAAATGGGACAAGAGGCAGCTACACTTGAGGATTCTCCAGTTGAGTCCTTGCTGGAGGTCGATTAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

201

Amino Acids

22.9

Weight (kDa)

9.61

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AarI	CACCTGC	1 cut(s)	208
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	208
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	2 cut(s)	346, 523
AccII	CGCG	1 cut(s)	452
AciI	CCGC	2 cut(s)	452, 530
AcuI	CTGAAG	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	210, 356
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	4 cut(s)	32, 134, 163, 299
AjnI	CCWGG	2 cut(s)	247, 371
AluBI	AGCT	2 cut(s)	61, 553
AluI	AGCT	2 cut(s)	61, 553
Alw21I	GWGCWC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	455, 550
Asp700I	GAANNNNTTC	1 cut(s)	285
Asp718I	GGTACC	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	346, 523
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	466, 500
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	442, 562
BciT130I	CCWGG	2 cut(s)	249, 373
BfaI	CTAG	2 cut(s)	405, 413
BfmI	CTRYAG	2 cut(s)	333, 495
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	4 cut(s)	453, 456, 531, 551
BlsI	GCNGC	4 cut(s)	454, 457, 532, 552
Bme1390I	CCNGG	2 cut(s)	249, 373
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	2 cut(s)	348, 525
BmrFI	CCNGG	2 cut(s)	249, 373
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	466, 500
BpmI	CTGGAG	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 356
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	3 cut(s)	129, 324, 571
BseBI	CCWGG	2 cut(s)	249, 373
BseGI	GGATG	2 cut(s)	377, 400
BseLI	CCNNNNNNNGG	2 cut(s)	210, 356
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	3 cut(s)	129, 324, 571
BseXI	GCAGC	2 cut(s)	442, 562
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	2 cut(s)	346, 523
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	210, 356
BsmFI	GGGAC	1 cut(s)	554
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	452, 530
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	2 cut(s)	348, 525
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	208
BspT107I	GGYRCC	2 cut(s)	346, 523
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	3 cut(s)	129, 324, 571
BssAI	RCCGGY	1 cut(s)	526
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	249, 373
Bst4CI	ACNGT	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	227, 432, 462
BstF5I	GGATG	2 cut(s)	377, 400
BstFNI	CGCG	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 91
BstNI	CCWGG	2 cut(s)	249, 373
BstNSI	RCATGY	2 cut(s)	56, 82
BstSCI	CCNGG	2 cut(s)	247, 371
BstSFI	CTRYAG	2 cut(s)	333, 495
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	2 cut(s)	442, 562
BstV2I	GAAGAC	2 cut(s)	466, 500
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	377, 400
BtsIMutI	CAGTG	1 cut(s)	422
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	528
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	3 cut(s)	53, 79, 238
CviJI	RGCY	7 cut(s)	61, 140, 265, 339, 371, 455, 553
CviKI_1	RGCY	7 cut(s)	61, 140, 265, 339, 371, 455, 553
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	227, 432, 462
DraIII	CACNNNGTG	1 cut(s)	278
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eco32I	GATATC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	247, 371
EcoRV	GATATC	1 cut(s)	99
FaeI	CATG	3 cut(s)	56, 82, 241
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	3 cut(s)	52, 78, 237
Fnu4HI	GCNGC	4 cut(s)	453, 456, 531, 551
FokI	GGATG	2 cut(s)	364, 387
Fsp4HI	GCNGC	4 cut(s)	453, 456, 531, 551
FspBI	CTAG	2 cut(s)	405, 413
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	4 cut(s)	453, 456, 531, 551
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	1 cut(s)	527
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	56, 82, 241
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	565, 577
HpaII	CCGG	1 cut(s)	527
Hpy188III	TCNNGA	4 cut(s)	74, 160, 278, 299
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4V	TGCA	8 cut(s)	52, 94, 121, 272, 388, 400, 458, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 91
HpyF3I	CTNAG	3 cut(s)	227, 432, 462
Hsp92II	CATG	3 cut(s)	56, 82, 241
HspAI	GCGC	1 cut(s)	450
KpnI	GGTACC	1 cut(s)	350
KroI	GCCGGC	1 cut(s)	526
KroNI	GCCGGC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	2 cut(s)	442, 562
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	405, 413
MaeIII	GTNAC	1 cut(s)	13
MboII	GAAGA	4 cut(s)	122, 148, 466, 500
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	69, 129, 309
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	7 cut(s)	285, 295, 351, 540, 555, 582, 594
MroNI	GCCGGC	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	519, 597
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	2 cut(s)	249, 373
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	2 cut(s)	249, 373
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	58, 91
NaeI	GCCGGC	1 cut(s)	528
NgoMIV	GCCGGC	1 cut(s)	526
NlaIII	CATG	3 cut(s)	56, 82, 241
NlaIV	GGNNCC	2 cut(s)	348, 525
NspI	RCATGY	2 cut(s)	56, 82
PaqCI	CACCTGC	1 cut(s)	208
PciI	ACATGT	1 cut(s)	78
PctI	GAATGC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	565
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	454, 457, 532, 552
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
PscI	ACATGT	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	247, 371
PspGI	CCWGG	2 cut(s)	247, 371
PspN4I	GGNNCC	2 cut(s)	348, 525
PspPI	GGNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	499
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	519, 597
SatI	GCNGC	4 cut(s)	453, 456, 531, 551
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	2 cut(s)	249, 373
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	2 cut(s)	333, 495
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	3 cut(s)	69, 129, 309
SsiI	CCGC	2 cut(s)	452, 530
SspMI	CTAG	2 cut(s)	405, 413
StyD4I	CCNGG	2 cut(s)	247, 371
TaaI	ACNGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	144, 593
TasI	AATT	3 cut(s)	69, 129, 309
TauI	GCSGC	2 cut(s)	455, 533
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	2 cut(s)	519, 597
Tru9I	TTAA	2 cut(s)	519, 597
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	2 cut(s)	455, 550
TspRI	CASTG	1 cut(s)	429
XceI	RCATGY	2 cut(s)	56, 82
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	405, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.