Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Reverse (-)

45223269 .. 45227799

Gene Structure 4531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTTGAGGGAGAGGCTCTTGGTTTAGGCGCCATGTTTAAAACCCGATCAATTCGTGTTCCTAAGCCATTCAAGGTTGGCCCTCTACCTACTGGTGGTTCTTACATCATTATGGAGTTTATTGACTTTGGTTTATCCAGAGGTAATCAGTCTGATCTAGGCAGGAAGCTTGCTGAGATGCATAAGACTGGAAAATCCGAGAAAGGTTTTGGTTTTGAAGTTAACAATACAATAGGCAGCACTCCGCAGATAAACACTTGGTCATCAGATTGGATTCAGTTTTATGGGGAGCATAGACTGGGTTATCAGTTGCAGCTGGCCGTGGACCGATATGGTGATAGTACCATTTATGAAAAAGGACAAAGATTAGTGAAGAGTATGGGACCTCTCTTTGATAATATAGTGATTGAGCCATGCCTGTTACATGGGGACTTATGGAGCGGAAATATCAGCTCTGACAAGAAGGGAGAGCCAGTTATACTTGACCCGGCATGTTACTATGGACATAATGAGGCTGAATTTGGAATGTCGTGGTGTGCTGGCTTTGGTGGATCTTTCTACAGTTCCTATTTCGAGGTGATGCCCAAGCAACCAGGGTTTGAGAAAAGGAAAGACCTCTACATGTTGTATCATTACTTGAATCATTATAACCTCTTTGGTTCTGGTTATCGTTCCTCTGCAATGTCCATAATAGATGACTATCTTCGGATGTTAAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

240

Amino Acids

27.11

Weight (kDa)

6.6

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fructosamin_kin	PF03881	1 - 236	3.3e-87	Fructosamine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AccB1I	GGYRCC	1 cut(s)	29
AccBSI	CCGCTC	1 cut(s)	441
AciI	CCGC	2 cut(s)	245, 441
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	518
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	3 cut(s)	73, 218, 640
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	4 cut(s)	169, 316, 453, 719
AluI	AGCT	4 cut(s)	169, 316, 453, 719
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	2 cut(s)	79, 318
ApeKI	GCWGC	2 cut(s)	237, 313
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	80, 325, 383
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	347, 589
AvaII	GGWCC	2 cut(s)	325, 383
BanI	GGYRCC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	249, 325
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	488
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	559
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	2 cut(s)	238, 314
BlsI	GCNGC	2 cut(s)	239, 315
Bme1390I	CCNGG	2 cut(s)	488, 594
Bme18I	GGWCC	2 cut(s)	325, 383
BmgT120I	GGNCC	3 cut(s)	80, 325, 383
BmiI	GGNNCC	2 cut(s)	31, 384
BmrFI	CCNGG	2 cut(s)	488, 594
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	168, 570
BmuI	ACTGGG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	321, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	4 cut(s)	97, 193, 303, 473
Bse3DI	GCAATG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	321, 593
BseGI	GGATG	1 cut(s)	714
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	4 cut(s)	97, 193, 303, 473
BseXI	GCAGC	2 cut(s)	249, 325
BshFI	GGCC	2 cut(s)	81, 320
BshNI	GGYRCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	396, 443
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	396, 443
BsnI	GGCC	2 cut(s)	81, 320
Bsp143I	GATC	3 cut(s)	47, 154, 551
BspACI	CCGC	2 cut(s)	245, 441
BspANI	GGCC	2 cut(s)	81, 320
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	31, 384
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	4 cut(s)	97, 193, 303, 473
BssECI	CCNNGG	2 cut(s)	321, 593
BssMI	GATC	3 cut(s)	47, 154, 551
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	3 cut(s)	171, 318, 541
BstDEI	CTNAG	3 cut(s)	63, 174, 720
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	714
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	50, 157, 554
BstMBI	GATC	3 cut(s)	47, 154, 551
BstNI	CCWGG	1 cut(s)	594
BstNSI	RCATGY	2 cut(s)	495, 625
BstSCI	CCNGG	2 cut(s)	486, 592
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	249, 325
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	81, 320
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	714
Cac8I	GCNNGC	3 cut(s)	171, 318, 541
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	80, 325, 383
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	5 cut(s)	34, 414, 425, 492, 622
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	3 cut(s)	63, 174, 720
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	3 cut(s)	49, 156, 553
DpnII	GATC	3 cut(s)	47, 154, 551
DraI	TTTAAA	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	325, 383
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	592
EcoT22I	ATGCAT	1 cut(s)	183
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
FaeI	CATG	5 cut(s)	37, 417, 428, 495, 625
FaqI	GGGAC	2 cut(s)	396, 443
FatI	CATG	5 cut(s)	33, 413, 424, 491, 621
Fnu4HI	GCNGC	2 cut(s)	238, 314
Fsp4HI	GCNGC	2 cut(s)	238, 314
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	238, 314
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	81, 320
HapII	CCGG	1 cut(s)	488
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	37, 417, 428, 495, 625
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	2 cut(s)	167, 717
HinfI	GANTC	2 cut(s)	274, 640
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	2 cut(s)	347, 589
Hpy166II	GTNNAC	2 cut(s)	223, 325
Hpy188I	TCNGA	5 cut(s)	154, 199, 268, 457, 708
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	2 cut(s)	223, 325
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4V	TGCA	3 cut(s)	181, 313, 680
HpyF3I	CTNAG	3 cut(s)	63, 174, 720
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	5 cut(s)	37, 417, 428, 495, 625
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	47, 154, 551
LmnI	GCTCC	2 cut(s)	289, 438
Lsp1109I	GCAGC	2 cut(s)	249, 325
LweI	GCATC	2 cut(s)	168, 570
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	420, 494
MalI	GATC	3 cut(s)	49, 156, 553
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	3 cut(s)	47, 154, 551
MboII	GAAGA	2 cut(s)	385, 695
MflI	RGATCY	1 cut(s)	551
MluCI	AATT	2 cut(s)	51, 518
Mly113I	GGCGCC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	7, 93, 134, 396, 505, 568, 626, 662, 685
Mph1103I	ATGCAT	1 cut(s)	183
MseI	TTAA	3 cut(s)	39, 222, 713
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	2 cut(s)	488, 594
MvaI	CCWGG	1 cut(s)	594
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	3 cut(s)	47, 154, 551
NlaIII	CATG	5 cut(s)	37, 417, 428, 495, 625
NlaIV	GGNNCC	2 cut(s)	31, 384
NsiI	ATGCAT	1 cut(s)	183
NspI	RCATGY	2 cut(s)	495, 625
PciI	ACATGT	1 cut(s)	621
PfeI	GAWTC	2 cut(s)	274, 640
PkrI	GCNGC	2 cut(s)	239, 315
PluTI	GGCGCC	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	383
PscI	ACATGT	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	31, 384
PspPI	GGNCC	3 cut(s)	80, 325, 383
PspPPI	RGGWCCY	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	39, 222, 713
SatI	GCNGC	2 cut(s)	238, 314
Sau3AI	GATC	3 cut(s)	47, 154, 551
Sau96I	GGNCC	3 cut(s)	80, 325, 383
ScrFI	CCNGG	2 cut(s)	488, 594
SfaNI	GCATC	2 cut(s)	168, 570
SfcI	CTRYAG	1 cut(s)	559
SfoI	GGCGCC	1 cut(s)	31
SinI	GGWCC	2 cut(s)	325, 383
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	51, 518
SsiI	CCGC	2 cut(s)	245, 441
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	486, 592
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	1 cut(s)	573
TaqII	GACCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	51, 518
TfiI	GAWTC	2 cut(s)	274, 640
Tru1I	TTAA	3 cut(s)	39, 222, 713
Tru9I	TTAA	3 cut(s)	39, 222, 713
TseI	GCWGC	2 cut(s)	237, 313
TspDTI	ATGAA	1 cut(s)	366
VpaK11BI	GGWCC	2 cut(s)	325, 383
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	2 cut(s)	495, 625
XspI	CTAG	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.