Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Reverse (-)

45148496 .. 45153409

Gene Structure 4914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGGCACACGTGGGACTCATATCGTTCTCTTCTGCCTTACCTTCTCTGCCTCGTCTTCCTCGTCTGTCCTCCACAAAGCACCGACCTTTAATCATGGCGGCAATGAGTGATGATCCGGTTCGTAAATGGATTCTCACTGAAGGAAATGCAACAGAGATAATAAGAATTAGTCCTATAGGCGGTGGTTGCATCAATCGTGCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTTGTTAAAACAAACAGGAGCATTGGACCATCTATGTTTGAGGGAGAGGCTCTTGGTTTAGGCGCCATGTTTAAAACCGGATCAATTCGTGTCCCTAAGCCATTCAAGGTTGGCCCTCTACCTACTGGTGGTTCTTACATCATTATGGAGTTTATTGACTTTGGTTTATCCAGAGGTAATCAGTCTGATCTAGGCAGGAAGCTTGCTGAGATGCATAAGACTGGAAAATCTGAGAAAGGTTTTGGTTTTGAAGTTAACAATACAATAGGCAGCACTCCGCAGATAAACACTTGGTCATCAGATTGGATTCAGTTTTATGGGGAGCATAGACTGGGTTATCAGTTGCAGCTGGCCGTGGACCGATATGGTGATAGTACCATTTATGAAAAAGGTAAACATTGTCTTGTTGTATTCTTAATGAAGATGCTTGATCACATTTCATGGGTAGTCTACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

230

Amino Acids

25.43

Weight (kDa)

9.34

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fructosamin_kin	PF03881	42 - 205	3e-47	Fructosamine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	3 cut(s)	101, 183, 512
AclWI	GGATC	2 cut(s)	110, 322
AcoI	YGGCCR	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	162
AcvI	CACGTG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	182, 362
AflIII	ACRYGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	340, 485
AluBI	AGCT	2 cut(s)	436, 583
AluI	AGCT	2 cut(s)	436, 583
AlwI	GGATC	2 cut(s)	110, 322
AoxI	GGCC	2 cut(s)	346, 585
ApeKI	GCWGC	2 cut(s)	504, 580
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	260, 347, 592
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	260, 592
BanI	GGYRCC	1 cut(s)	296
BbrPI	CACGTG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	516, 592
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	664
BfaI	CTAG	2 cut(s)	204, 425
BfmI	CTRYAG	2 cut(s)	177, 685
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	3 cut(s)	102, 505, 581
BlsI	GCNGC	3 cut(s)	103, 506, 582
Bme18I	GGWCC	2 cut(s)	260, 592
BmgT120I	GGNCC	3 cut(s)	260, 347, 592
BmiI	GGNNCC	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	4 cut(s)	201, 211, 435, 648
BmuI	ACTGGG	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	588
BsaWI	WCCGGW	2 cut(s)	118, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 362
Bse1I	ACTGG	3 cut(s)	364, 460, 570
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	182, 362
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	432, 456
BseNI	ACTGG	3 cut(s)	364, 460, 570
BseXI	GCAGC	2 cut(s)	516, 592
BshFI	GGCC	2 cut(s)	348, 587
BshNI	GGYRCC	1 cut(s)	296
BsiSI	CCGG	2 cut(s)	119, 312
BslFI	GGGAC	2 cut(s)	30, 311
BslI	CCNNNNNNNGG	2 cut(s)	182, 362
BsmFI	GGGAC	2 cut(s)	30, 311
BsnI	GGCC	2 cut(s)	348, 587
Bsp143I	GATC	4 cut(s)	115, 314, 421, 664
BspACI	CCGC	3 cut(s)	101, 183, 512
BspANI	GGCC	2 cut(s)	348, 587
BspCNI	CTCAG	2 cut(s)	433, 457
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	2 cut(s)	110, 322
BspT107I	GGYRCC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	364, 460, 570
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	4 cut(s)	115, 314, 421, 664
BssNI	GRCGYC	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	438, 585
BstDEI	CTNAG	3 cut(s)	330, 441, 465
BstDSI	CCRYGG	1 cut(s)	588
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	4 cut(s)	118, 317, 424, 667
BstMBI	GATC	4 cut(s)	115, 314, 421, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstSFI	CTRYAG	2 cut(s)	177, 685
BstV1I	GCAGC	2 cut(s)	516, 592
BstV2I	GAAGAC	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	348, 587
BtgI	CCRYGG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	138, 216
Cac8I	GCNNGC	2 cut(s)	438, 585
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	260, 347, 592
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	3 cut(s)	97, 301, 675
CviJI	RGCY	6 cut(s)	284, 334, 348, 436, 583, 587
CviKI_1	RGCY	6 cut(s)	284, 334, 348, 436, 583, 587
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	3 cut(s)	330, 441, 465
DinI	GGCGCC	1 cut(s)	298
DpnI	GATC	4 cut(s)	117, 316, 423, 666
DpnII	GATC	4 cut(s)	115, 314, 421, 664
DraI	TTTAAA	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	260, 592
Eco57I	CTGAAG	1 cut(s)	162
Eco72I	CACGTG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	450
EgeI	GGCGCC	1 cut(s)	298
EheI	GGCGCC	1 cut(s)	298
FaeI	CATG	3 cut(s)	100, 304, 678
FaqI	GGGAC	2 cut(s)	30, 311
FatI	CATG	3 cut(s)	96, 300, 674
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	3 cut(s)	102, 505, 581
Fsp4HI	GCNGC	3 cut(s)	102, 505, 581
FspBI	CTAG	2 cut(s)	204, 425
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	3 cut(s)	102, 505, 581
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	348, 587
HapII	CCGG	2 cut(s)	119, 312
HhaI	GCGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	3 cut(s)	100, 304, 678
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	18, 133, 541
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	119, 312
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	4 cut(s)	490, 592, 629, 685
Hpy188I	TCNGA	3 cut(s)	421, 466, 535
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	4 cut(s)	490, 592, 629, 685
HpyAV	CCTTC	2 cut(s)	54, 137
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	4 cut(s)	152, 192, 448, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	3 cut(s)	330, 441, 465
HpySE526I	ACGT	1 cut(s)	12
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	100, 304, 678
HspAI	GCGC	1 cut(s)	297
KasI	GGCGCC	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	664
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	115, 314, 421, 664
LmnI	GCTCC	2 cut(s)	252, 556
Lsp1109I	GCAGC	2 cut(s)	516, 592
LweI	GCATC	4 cut(s)	201, 211, 435, 648
MaeI	CTAG	2 cut(s)	204, 425
MaeII	ACGT	1 cut(s)	12
MalI	GATC	4 cut(s)	117, 316, 423, 666
MboI	GATC	4 cut(s)	115, 314, 421, 664
MboII	GAAGA	3 cut(s)	24, 50, 667
MluCI	AATT	2 cut(s)	168, 318
Mly113I	GGCGCC	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	7 cut(s)	63, 72, 82, 268, 274, 360, 401
Mph1103I	ATGCAT	1 cut(s)	450
MseI	TTAA	5 cut(s)	92, 240, 306, 489, 650
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	2 cut(s)	119, 312
MwoI	GCNNNNNNNGC	1 cut(s)	189
NarI	GGCGCC	1 cut(s)	297
NdeII	GATC	4 cut(s)	115, 314, 421, 664
NlaIII	CATG	3 cut(s)	100, 304, 678
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	2 cut(s)	61, 205
PfeI	GAWTC	2 cut(s)	133, 541
PkrI	GCNGC	3 cut(s)	103, 506, 582
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	300
PmaCI	CACGTG	1 cut(s)	13
PmlI	CACGTG	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	13
PspCI	CACGTG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	3 cut(s)	260, 347, 592
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	5 cut(s)	92, 240, 306, 489, 650
SatI	GCNGC	3 cut(s)	102, 505, 581
Sau3AI	GATC	4 cut(s)	115, 314, 421, 664
Sau96I	GGNCC	3 cut(s)	260, 347, 592
SchI	GAGTC	1 cut(s)	12
SfaNI	GCATC	4 cut(s)	201, 211, 435, 648
SfcI	CTRYAG	2 cut(s)	177, 685
SfoI	GGCGCC	1 cut(s)	298
SinI	GGWCC	2 cut(s)	260, 592
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	168, 318
SsiI	CCGC	3 cut(s)	101, 183, 512
SspDI	GGCGCC	1 cut(s)	296
SspMI	CTAG	2 cut(s)	204, 425
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	2 cut(s)	168, 318
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	133, 541
Tru1I	TTAA	5 cut(s)	92, 240, 306, 489, 650
Tru9I	TTAA	5 cut(s)	92, 240, 306, 489, 650
TscAI	CASTG	2 cut(s)	145, 223
TseI	GCWGC	2 cut(s)	504, 580
TspDTI	ATGAA	3 cut(s)	633, 663, 668
TspRI	CASTG	2 cut(s)	145, 223
VpaK11BI	GGWCC	2 cut(s)	260, 592
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	2 cut(s)	204, 425
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.