Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Forward (+)

23412370 .. 23416861

Gene Structure 4492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACAATGGTGGCACACGTGGGACTCATATCGTTCTCTTCTTCCTTACCTTTTCTGCCTCGTCTTCCTCGTCTGTCCTCCACAAAGCACCGACCTTTAATCATGGCGGCAATGAGTGATGATCCGGTTCGTAAATGGATTCTCACCGAAGGAAATGCAACAGAGATAATAAGAATTAGTCCTATAGGCGGTGGTTGCATCAATCGTGCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTTGTTAAAACAAACAGGAGCATTGGACCATCTATGTTTGAGGGAGAGGCTCTTGGTTTAGATGCCATGTTTAAAACCCGATCGATTCGTGTTCCTAAGCCATTCAAGGTTGGCCCTCTACCTACTGGTGGTTCTTACATCATTATGGAGTTTATTGACTTTGGTTTATCCAGAGGTAATCAGTCTGATCTAGGCAGGAAGCTTGCTGAGATGCATAAGACTGGAAAATCTGAGAAAGGTTTTGGTTTTGAAGTTAACAATACAATAGGCAGCACTCCGCAGATAAACACTTGGTCATCAGATTGGATTCATTTTTATGGCGAGCATAGACTGGGTTATCAGTTGCAGCTGGCCGTGGACCGATATGGTGATAGTACCATTTATGAAAAAGGACAAAGATTAGTAAAGAGTATGGGACCTCTCTTCGATAATATAGTGATTGAGCCATGCCTGTTACATGGGGACTTATGGAGCGGAAATATCAGCTCTGACAAGAAAGGAGAACCAGTTATACTTGACCCGGCATGTTACTATGGACATAATGAGGCCGAATTTGGAATGTCGTGGTGTGCTGGTTTTGGTGGATCTTTCTACAGTTCCTATTTTGAGGTGATGCCCAAGCAACCAGGGTTTGAGAAAAGGAAAGATCTCTACATGTTGTATCATTACTTGAACCATTATAACCTCTTTGGTTCTGGTTATCGTTCCTCTGCAATGTCCATAATAGATGACTATCTTCGGATGTTAAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

331

Amino Acids

37.08

Weight (kDa)

8.51

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fructosamin_kin	PF03881	44 - 327	8.4e-99	Fructosamine kinase
APH	PF01636	59 - 269	2.5e-06	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AccBSI	CCGCTC	1 cut(s)	714
AciI	CCGC	4 cut(s)	107, 189, 518, 714
AclWI	GGATC	2 cut(s)	116, 832
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	791
AcvI	CACGTG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	2 cut(s)	188, 368
AflIII	ACRYGT	2 cut(s)	16, 894
AgsI	TTSAA	3 cut(s)	346, 491, 913
AjnI	CCWGG	1 cut(s)	865
AluBI	AGCT	4 cut(s)	442, 589, 726, 992
AluI	AGCT	4 cut(s)	442, 589, 726, 992
AlwI	GGATC	2 cut(s)	116, 832
AoxI	GGCC	3 cut(s)	352, 591, 786
ApeKI	GCWGC	2 cut(s)	510, 586
ApoI	RAATTY	1 cut(s)	791
AspS9I	GGNCC	4 cut(s)	266, 353, 598, 656
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	3 cut(s)	136, 620, 862
AvaII	GGWCC	3 cut(s)	266, 598, 656
BbrPI	CACGTG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	522, 598
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	867
BcnI	CCSGG	1 cut(s)	761
BfaI	CTAG	2 cut(s)	210, 431
BfmI	CTRYAG	2 cut(s)	183, 832
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	3 cut(s)	108, 511, 587
BlsI	GCNGC	3 cut(s)	109, 512, 588
Bme1390I	CCNGG	2 cut(s)	761, 867
Bme18I	GGWCC	3 cut(s)	266, 598, 656
BmgT120I	GGNCC	4 cut(s)	266, 353, 598, 656
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	2 cut(s)	761, 867
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	5 cut(s)	207, 217, 292, 441, 843
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	761
Bsa29I	ATCGAT	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	972
BsaJI	CCNNGG	2 cut(s)	594, 866
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 368
Bse1I	ACTGG	4 cut(s)	370, 466, 576, 746
Bse3DI	GCAATG	2 cut(s)	117, 960
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	1 cut(s)	867
BseCI	ATCGAT	1 cut(s)	323
BseDI	CCNNGG	2 cut(s)	594, 866
BseGI	GGATG	1 cut(s)	987
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	2 cut(s)	188, 368
BseMI	GCAATG	2 cut(s)	117, 960
BseMII	CTCAG	2 cut(s)	438, 462
BseNI	ACTGG	4 cut(s)	370, 466, 576, 746
BseXI	GCAGC	2 cut(s)	522, 598
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	3 cut(s)	354, 593, 788
BshVI	ATCGAT	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	125, 761
BslFI	GGGAC	3 cut(s)	36, 669, 716
BslI	CCNNNNNNNGG	2 cut(s)	188, 368
BsmFI	GGGAC	3 cut(s)	36, 669, 716
BsnI	GGCC	3 cut(s)	354, 593, 788
Bsp143I	GATC	5 cut(s)	121, 320, 427, 824, 886
BspACI	CCGC	4 cut(s)	107, 189, 518, 714
BspANI	GGCC	3 cut(s)	354, 593, 788
BspCNI	CTCAG	2 cut(s)	439, 463
BspDI	ATCGAT	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	116, 832
BsrBI	CCGCTC	1 cut(s)	714
BsrDI	GCAATG	2 cut(s)	117, 960
BsrI	ACTGG	4 cut(s)	370, 466, 576, 746
BssECI	CCNNGG	2 cut(s)	594, 866
BssMI	GATC	5 cut(s)	121, 320, 427, 824, 886
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	2 cut(s)	43, 668
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	444, 563, 591
BstDEI	CTNAG	4 cut(s)	336, 447, 471, 993
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	987
BstKTI	GATC	5 cut(s)	124, 323, 430, 827, 889
BstMBI	GATC	5 cut(s)	121, 320, 427, 824, 886
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	867
BstNSI	RCATGY	2 cut(s)	768, 898
BstSCI	CCNGG	2 cut(s)	759, 865
BstSFI	CTRYAG	2 cut(s)	183, 832
BstV1I	GCAGC	2 cut(s)	522, 598
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	824, 886
BstYI	RGATCY	2 cut(s)	824, 886
Bsu15I	ATCGAT	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	354, 593, 788
BsuTUI	ATCGAT	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	1 cut(s)	987
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	444, 563, 591
Cfr13I	GGNCC	4 cut(s)	266, 353, 598, 656
ClaI	ATCGAT	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	6 cut(s)	103, 307, 687, 698, 765, 895
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	4 cut(s)	336, 447, 471, 993
DpnI	GATC	5 cut(s)	123, 322, 429, 826, 888
DpnII	GATC	5 cut(s)	121, 320, 427, 824, 886
DraI	TTTAAA	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	43, 668
EarI	CTCTTC	2 cut(s)	43, 668
Eco47I	GGWCC	3 cut(s)	266, 598, 656
Eco72I	CACGTG	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	865
EcoT22I	ATGCAT	1 cut(s)	456
FaeI	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
FaqI	GGGAC	3 cut(s)	36, 669, 716
FatI	CATG	6 cut(s)	102, 306, 686, 697, 764, 894
Fnu4HI	GCNGC	3 cut(s)	108, 511, 587
Fsp4HI	GCNGC	3 cut(s)	108, 511, 587
FspBI	CTAG	2 cut(s)	210, 431
GluI	GCNGC	3 cut(s)	108, 511, 587
HaeIII	GGCC	3 cut(s)	354, 593, 788
HapII	CCGG	2 cut(s)	125, 761
Hin1II	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	2 cut(s)	440, 990
HinfI	GANTC	4 cut(s)	24, 139, 325, 547
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	125, 761
HphI	GGTGA	3 cut(s)	136, 620, 862
Hpy166II	GTNNAC	2 cut(s)	496, 598
Hpy188I	TCNGA	5 cut(s)	427, 472, 541, 730, 981
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	2 cut(s)	496, 598
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	158, 198, 454, 586, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	4 cut(s)	336, 447, 471, 993
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	121, 320, 427, 824, 886
LmnI	GCTCC	2 cut(s)	258, 711
Lsp1109I	GCAGC	2 cut(s)	522, 598
LweI	GCATC	5 cut(s)	207, 217, 292, 441, 843
MaeI	CTAG	2 cut(s)	210, 431
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	693, 767
MalI	GATC	5 cut(s)	123, 322, 429, 826, 888
MbiI	CCGCTC	1 cut(s)	714
MboI	GATC	5 cut(s)	121, 320, 427, 824, 886
MboII	GAAGA	5 cut(s)	30, 33, 56, 655, 968
MflI	RGATCY	2 cut(s)	824, 886
MluCI	AATT	2 cut(s)	174, 791
MlyI	GAGTC	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	456
MseI	TTAA	5 cut(s)	98, 246, 312, 495, 986
MslI	CAYNNNNRTG	2 cut(s)	383, 555
MspA1I	CMGCKG	1 cut(s)	589
MspI	CCGG	2 cut(s)	125, 761
MspR9I	CCNGG	2 cut(s)	761, 867
MvaI	CCWGG	1 cut(s)	867
MwoI	GCNNNNNNNGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	761
NdeII	GATC	5 cut(s)	121, 320, 427, 824, 886
NlaIII	CATG	6 cut(s)	106, 310, 690, 701, 768, 898
NlaIV	GGNNCC	1 cut(s)	657
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	2 cut(s)	768, 898
PciI	ACATGT	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	2 cut(s)	67, 211
PfeI	GAWTC	3 cut(s)	139, 325, 547
PkrI	GCNGC	3 cut(s)	109, 512, 588
Ple19I	CGATCG	1 cut(s)	323
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	19
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	894
PsiI	TTATAA	1 cut(s)	921
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	865
PspCI	CACGTG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	4 cut(s)	266, 353, 598, 656
PspPPI	RGGWCCY	1 cut(s)	656
PsrI	GAACNNNNNNTAC	2 cut(s)	735, 767
PsuI	RGATCY	2 cut(s)	824, 886
PvuI	CGATCG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	2 cut(s)	383, 555
SaqAI	TTAA	5 cut(s)	98, 246, 312, 495, 986
SatI	GCNGC	3 cut(s)	108, 511, 587
Sau3AI	GATC	5 cut(s)	121, 320, 427, 824, 886
Sau96I	GGNCC	4 cut(s)	266, 353, 598, 656
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	761, 867
SfaNI	GCATC	5 cut(s)	207, 217, 292, 441, 843
SfcI	CTRYAG	2 cut(s)	183, 832
SinI	GGWCC	3 cut(s)	266, 598, 656
SmiMI	CAYNNNNRTG	2 cut(s)	383, 555
Sse9I	AATT	2 cut(s)	174, 791
SsiI	CCGC	4 cut(s)	107, 189, 518, 714
SspMI	CTAG	2 cut(s)	210, 431
StyD4I	CCNGG	2 cut(s)	759, 865
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	323, 666
TaqII	GACCGA	1 cut(s)	615
TasI	AATT	2 cut(s)	174, 791
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	139, 325, 547
Tru1I	TTAA	5 cut(s)	98, 246, 312, 495, 986
Tru9I	TTAA	5 cut(s)	98, 246, 312, 495, 986
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	2 cut(s)	510, 586
TspDTI	ATGAA	2 cut(s)	539, 639
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	3 cut(s)	266, 598, 656
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	2 cut(s)	768, 898
XspI	CTAG	2 cut(s)	210, 431
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.