Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Forward (+)

21613915 .. 21618292

Gene Structure 4378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTGGCACACGTGGGACTCATATCGTTCTCTTCTTCCTTACCTTCTCTGCCTGGTCTTCCTCGTCTGTCCTCCACAAAGCACCGACCTTTAATCATGGCGGCAATGAGTGATGATCCGGTTCGTAAATGGATTCTCACCGAAGGAAATGCAACAGAGATAATAAGAATTAGTCCTATAGGGGGTGGTTGCATCAATCGTGCTAGTCGTTATGACACTGATGCGGGTTCTTTCTTTGTTAAAACAAACAGGAGCATTGGACCATCTATGTTTGAGGGAGAGGCTCTTGGTTTAGATGCCATGTTTAAAACCCAATCAATTCGTGTTCCTAAGCCATTCAAGGTTGGCCCTCTACCTACTGGTGGTTCTTACATCATTATGGAGTTTATTGACTTTGGTTTATCCAGAGGTAATCAGTCTGATCTAGGCAGGAAGCTTGCTGAGATGCATAAGACTGGAAAATCTGAGAAAGGTTTTGGTTTTGAAGTTAACAATACAATAGGCAGCACTCTGCAGATAAACACTTGGTCATCAGATTGGATTCAGTTTTATGGGGAGCATAGACTGGGTTATCAGTTGCAGCTGGCCATGGACCAGTATAATGATAGTACCATTTATGAAAAAGGACAAAGATTAGTGAAGAGTATGGGACCTCTCTTTGATAATATAGTGATTGAGCCATGCCTGTTACATGGGGACTTATGGAGCGGAAATATCAGCTCTGACAAGAAAGGAGAGCCAGTTATACTAGACCCGGCATGTTACTATGGACATAACGAGGCTGAATTTGGAATGTCGTGGTGTGCTGGTTTTGGTGGATCTTTCTACAGTTCCTATTTTGAGGTGATGCCCAAGCAACCAGGGTTTGAGAAAAGGAAAGATCTCTACATGTTGTATCATTACTTGAATCATTATAACCTCTTTGGTTCTGGTTATCGTTCCTCTGCAATGTCCATAATAGATGACTATCTTCGGATGTTAAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

330

Amino Acids

36.76

Weight (kDa)

7.08

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fructosamin_kin	PF03881	42 - 325	8.4e-99	Fructosamine kinase
APH	PF01636	57 - 267	1.5e-06	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AccBSI	CCGCTC	1 cut(s)	708
AciI	CCGC	3 cut(s)	101, 224, 708
AclWI	GGATC	2 cut(s)	110, 826
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	1 cut(s)	785
AcvI	CACGTG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	182, 362
AflIII	ACRYGT	2 cut(s)	10, 888
AgsI	TTSAA	3 cut(s)	340, 485, 907
AjnI	CCWGG	2 cut(s)	52, 859
AluBI	AGCT	3 cut(s)	436, 583, 720
AluI	AGCT	3 cut(s)	436, 583, 720
AlwI	GGATC	2 cut(s)	110, 826
AoxI	GGCC	2 cut(s)	346, 585
ApeKI	GCWGC	2 cut(s)	504, 580
ApoI	RAATTY	1 cut(s)	785
AspS9I	GGNCC	4 cut(s)	260, 347, 592, 650
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	2 cut(s)	130, 856
AvaII	GGWCC	3 cut(s)	260, 592, 650
BalI	TGGCCA	1 cut(s)	587
BbrPI	CACGTG	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	516, 592
BccI	CCATC	1 cut(s)	271
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	54, 861
BcnI	CCSGG	1 cut(s)	755
BfaI	CTAG	3 cut(s)	204, 425, 749
BfmI	CTRYAG	3 cut(s)	177, 512, 826
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	3 cut(s)	102, 505, 581
BlsI	GCNGC	3 cut(s)	103, 506, 582
Bme1390I	CCNGG	3 cut(s)	54, 755, 861
Bme18I	GGWCC	3 cut(s)	260, 592, 650
BmgT120I	GGNCC	4 cut(s)	260, 347, 592, 650
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	3 cut(s)	54, 755, 861
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	5 cut(s)	201, 211, 286, 435, 837
BmuI	ACTGGG	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	966
BsaJI	CCNNGG	2 cut(s)	588, 860
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 362
Bse1I	ACTGG	5 cut(s)	364, 460, 570, 595, 740
Bse3DI	GCAATG	2 cut(s)	111, 954
Bse8I	GATNNNNATC	1 cut(s)	966
BseBI	CCWGG	2 cut(s)	54, 861
BseDI	CCNNGG	2 cut(s)	588, 860
BseGI	GGATG	1 cut(s)	981
BseJI	GATNNNNATC	1 cut(s)	966
BseLI	CCNNNNNNNGG	2 cut(s)	182, 362
BseMI	GCAATG	2 cut(s)	111, 954
BseMII	CTCAG	2 cut(s)	432, 456
BseNI	ACTGG	5 cut(s)	364, 460, 570, 595, 740
BseXI	GCAGC	2 cut(s)	516, 592
BshFI	GGCC	2 cut(s)	348, 587
BsiSI	CCGG	2 cut(s)	119, 755
BslFI	GGGAC	3 cut(s)	30, 663, 710
BslI	CCNNNNNNNGG	2 cut(s)	182, 362
BsmFI	GGGAC	3 cut(s)	30, 663, 710
BsnI	GGCC	2 cut(s)	348, 587
Bsp143I	GATC	4 cut(s)	115, 421, 818, 880
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	3 cut(s)	101, 224, 708
BspANI	GGCC	2 cut(s)	348, 587
BspCNI	CTCAG	2 cut(s)	433, 457
BspLI	GGNNCC	1 cut(s)	651
BspMAI	CTGCAG	1 cut(s)	516
BspPI	GGATC	2 cut(s)	110, 826
BsrBI	CCGCTC	1 cut(s)	708
BsrDI	GCAATG	2 cut(s)	111, 954
BsrI	ACTGG	5 cut(s)	364, 460, 570, 595, 740
BssECI	CCNNGG	2 cut(s)	588, 860
BssMI	GATC	4 cut(s)	115, 421, 818, 880
BssT1I	CCWWGG	1 cut(s)	588
Bst2UI	CCWGG	2 cut(s)	54, 861
Bst4CI	ACNGT	1 cut(s)	830
Bst6I	CTCTTC	2 cut(s)	37, 635
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	438, 585
BstDEI	CTNAG	4 cut(s)	330, 441, 465, 987
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	1 cut(s)	981
BstKTI	GATC	4 cut(s)	118, 424, 821, 883
BstMBI	GATC	4 cut(s)	115, 421, 818, 880
BstNI	CCWGG	2 cut(s)	54, 861
BstNSI	RCATGY	2 cut(s)	762, 892
BstSCI	CCNGG	3 cut(s)	52, 753, 859
BstSFI	CTRYAG	3 cut(s)	177, 512, 826
BstV1I	GCAGC	2 cut(s)	516, 592
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	2 cut(s)	818, 880
BstYI	RGATCY	2 cut(s)	818, 880
BsuRI	GGCC	2 cut(s)	348, 587
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	981
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	438, 585
Cfr13I	GGNCC	4 cut(s)	260, 347, 592, 650
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	7 cut(s)	97, 301, 589, 681, 692, 759, 889
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	4 cut(s)	330, 441, 465, 987
DpnI	GATC	4 cut(s)	117, 423, 820, 882
DpnII	GATC	4 cut(s)	115, 421, 818, 880
DraI	TTTAAA	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	2 cut(s)	37, 635
EarI	CTCTTC	2 cut(s)	37, 635
Eco130I	CCWWGG	1 cut(s)	588
Eco47I	GGWCC	3 cut(s)	260, 592, 650
Eco72I	CACGTG	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	650
EcoRII	CCWGG	2 cut(s)	52, 859
EcoT14I	CCWWGG	1 cut(s)	588
EcoT22I	ATGCAT	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	7 cut(s)	100, 304, 592, 684, 695, 762, 892
FaqI	GGGAC	3 cut(s)	30, 663, 710
FatI	CATG	7 cut(s)	96, 300, 588, 680, 691, 758, 888
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	102, 505, 581
Fsp4HI	GCNGC	3 cut(s)	102, 505, 581
FspBI	CTAG	3 cut(s)	204, 425, 749
GluI	GCNGC	3 cut(s)	102, 505, 581
HaeIII	GGCC	2 cut(s)	348, 587
HapII	CCGG	2 cut(s)	119, 755
Hin1II	CATG	7 cut(s)	100, 304, 592, 684, 695, 762, 892
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	18, 133, 541, 907
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	119, 755
HphI	GGTGA	2 cut(s)	130, 856
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	5 cut(s)	421, 466, 535, 724, 975
Hpy188III	TCNNGA	1 cut(s)	405
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	54, 137
HpyCH4III	ACNGT	1 cut(s)	830
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	6 cut(s)	152, 192, 448, 514, 580, 947
HpyF3I	CTNAG	4 cut(s)	330, 441, 465, 987
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	7 cut(s)	100, 304, 592, 684, 695, 762, 892
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	4 cut(s)	115, 421, 818, 880
LmnI	GCTCC	3 cut(s)	252, 556, 705
Lsp1109I	GCAGC	2 cut(s)	516, 592
LweI	GCATC	5 cut(s)	201, 211, 286, 435, 837
MaeI	CTAG	3 cut(s)	204, 425, 749
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	687, 761
MalI	GATC	4 cut(s)	117, 423, 820, 882
MbiI	CCGCTC	1 cut(s)	708
MboI	GATC	4 cut(s)	115, 421, 818, 880
MboII	GAAGA	5 cut(s)	24, 27, 50, 652, 962
MflI	RGATCY	2 cut(s)	818, 880
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	3 cut(s)	168, 318, 785
MluNI	TGGCCA	1 cut(s)	587
MlyI	GAGTC	1 cut(s)	12
Mox20I	TGGCCA	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	450
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	5 cut(s)	92, 240, 306, 489, 980
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	2 cut(s)	119, 755
MspR9I	CCNGG	3 cut(s)	54, 755, 861
MvaI	CCWGG	2 cut(s)	54, 861
NciI	CCSGG	1 cut(s)	755
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	4 cut(s)	115, 421, 818, 880
NlaIII	CATG	7 cut(s)	100, 304, 592, 684, 695, 762, 892
NlaIV	GGNNCC	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	450
NspI	RCATGY	2 cut(s)	762, 892
PciI	ACATGT	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	133, 541, 907
PkrI	GCNGC	3 cut(s)	103, 506, 582
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	13
PmlI	CACGTG	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	650
PscI	ACATGT	1 cut(s)	888
PsiI	TTATAA	1 cut(s)	915
Psp5II	RGGWCCY	1 cut(s)	650
Psp6I	CCWGG	2 cut(s)	52, 859
PspCI	CACGTG	1 cut(s)	13
PspGI	CCWGG	2 cut(s)	52, 859
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	4 cut(s)	260, 347, 592, 650
PspPPI	RGGWCCY	1 cut(s)	650
PstI	CTGCAG	1 cut(s)	516
PsuI	RGATCY	2 cut(s)	818, 880
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	5 cut(s)	92, 240, 306, 489, 980
SatI	GCNGC	3 cut(s)	102, 505, 581
Sau3AI	GATC	4 cut(s)	115, 421, 818, 880
Sau96I	GGNCC	4 cut(s)	260, 347, 592, 650
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	54, 755, 861
SfaNI	GCATC	5 cut(s)	201, 211, 286, 435, 837
SfcI	CTRYAG	3 cut(s)	177, 512, 826
SinI	GGWCC	3 cut(s)	260, 592, 650
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	168, 318, 785
SsiI	CCGC	3 cut(s)	101, 224, 708
SspMI	CTAG	3 cut(s)	204, 425, 749
StyD4I	CCNGG	3 cut(s)	52, 753, 859
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	1 cut(s)	830
TaiI	ACGT	1 cut(s)	15
TasI	AATT	3 cut(s)	168, 318, 785
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	3 cut(s)	133, 541, 907
Tru1I	TTAA	5 cut(s)	92, 240, 306, 489, 980
Tru9I	TTAA	5 cut(s)	92, 240, 306, 489, 980
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	2 cut(s)	504, 580
TspDTI	ATGAA	1 cut(s)	633
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	3 cut(s)	260, 592, 650
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	2 cut(s)	762, 892
XspI	CTAG	3 cut(s)	204, 425, 749
Zsp2I	ATGCAT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.