Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Forward (+)

13766285 .. 13768229

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTATGAAACTGGGTCAATTCGTGTCCCTAAGCCATTCAAGTTCGGGCCACTACCTACTGGTGGGTCTTACATCATTATGGAATTTATCGAATTTGGTTCATCTAGAGGTAACCAGTCTATTTTAGGCAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGTTTTGGTTTTGAAGTTGACAACACTGTAGGCAGCACTCCACAGATAAACACTTGGTCATCAGATTGGATTCAGTTCTATGGGGAGCATAGACTGGGTTATCAGTTGCAGCTGGCATTAGACCAGTACGGTGATAGTACTATATATGAAAAAGGACAAAGATTGATTAAGAGTATGGGATCGCTCTTTGATAACATAGCTATAGAACCATGTTTGTTACATGGGGACTTATGGAGCGGAAATATCAGCGCTGATAAGAATGGCGAGCCTGTTATACTTGATCCAGCATGTTACTATGGACATAACGAGGCAGAATTTGGAATGTCGTGGTGTGCTGGCTTTGGAGGATCTTTCTACGGTTCCTATTTCGAGGTGATGCCAAAACAACCAGGATTTGAAAAGAGGAAGGAGCTATATCTGTTGTATCATTACTTGAATCATTATAACCTCTTTGGGTCGGGTTATCGTTCGTCTTCAATGTCTATAATAGACGATTATCTTCGGATGTTGAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

230

Amino Acids

25.86

Weight (kDa)

5.87

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccBSI	CCGCTC	1 cut(s)	408
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	3 cut(s)	358, 446, 526
AcsI	RAATTY	3 cut(s)	83, 92, 485
AfaI	GTAC	2 cut(s)	299, 310
AfeI	AGCGCT	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	6 cut(s)	40, 185, 569, 607, 648, 682
AjnI	CCWGG	1 cut(s)	559
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	6 cut(s)	136, 155, 283, 371, 583, 686
AluI	AGCT	6 cut(s)	136, 155, 283, 371, 583, 686
AlwI	GGATC	3 cut(s)	358, 446, 526
Aor51HI	AGCGCT	1 cut(s)	421
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	204, 280
ApoI	RAATTY	3 cut(s)	83, 92, 485
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	314, 556
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	2 cut(s)	216, 292
BciT130I	CCWGG	1 cut(s)	561
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	198, 372
BfoI	RGCGCY	1 cut(s)	423
BisI	GCNGC	2 cut(s)	205, 281
BlsI	GCNGC	2 cut(s)	206, 282
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	561
BmrI	ACTGGG	2 cut(s)	21, 275
BmsI	GCATC	1 cut(s)	537
BmuI	ACTGGG	2 cut(s)	21, 275
BpiI	GAAGAC	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	5 cut(s)	16, 64, 115, 270, 295
BseBI	CCWGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseNI	ACTGG	5 cut(s)	16, 64, 115, 270, 295
BseXI	GCAGC	2 cut(s)	216, 292
BshFI	GGCC	1 cut(s)	49
BslFI	GGGAC	2 cut(s)	11, 410
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmFI	GGGAC	2 cut(s)	11, 410
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	350, 451, 518
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	3 cut(s)	358, 446, 526
BsrBI	CCGCTC	1 cut(s)	408
BsrI	ACTGG	5 cut(s)	16, 64, 115, 270, 295
BssMI	GATC	3 cut(s)	350, 451, 518
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	199, 302, 530
BstC8I	GCNNGC	4 cut(s)	138, 285, 437, 508
BstDEI	CTNAG	2 cut(s)	30, 687
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	681
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	3 cut(s)	353, 454, 521
BstMBI	GATC	3 cut(s)	350, 451, 518
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	462
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	198, 372
BstV1I	GCAGC	2 cut(s)	216, 292
BstV2I	GAAGAC	1 cut(s)	636
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	681
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	4 cut(s)	138, 285, 437, 508
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	298, 309
CviAII	CATG	3 cut(s)	381, 392, 459
CviQI	GTAC	2 cut(s)	298, 309
DdeI	CTNAG	2 cut(s)	30, 687
DpnI	GATC	3 cut(s)	352, 453, 520
DpnII	GATC	3 cut(s)	350, 451, 518
Eco47III	AGCGCT	1 cut(s)	421
Eco91I	GGTNACC	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	150
FaeI	CATG	3 cut(s)	384, 395, 462
FaqI	GGGAC	2 cut(s)	11, 410
FatI	CATG	3 cut(s)	380, 391, 458
Fnu4HI	GCNGC	2 cut(s)	205, 281
Fsp4HI	GCNGC	2 cut(s)	205, 281
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	2 cut(s)	205, 281
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	384, 395, 462
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	2 cut(s)	134, 684
HinfI	GANTC	2 cut(s)	241, 607
HphI	GGTGA	2 cut(s)	314, 556
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	166, 235, 675
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	571
HpyCH4III	ACNGT	3 cut(s)	199, 302, 530
HpyCH4V	TGCA	2 cut(s)	148, 280
HpyF3I	CTNAG	2 cut(s)	30, 687
Hsp92II	CATG	3 cut(s)	384, 395, 462
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	350, 451, 518
LmnI	GCTCC	3 cut(s)	256, 405, 580
Lsp1109I	GCAGC	2 cut(s)	216, 292
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	110, 387, 461
MalI	GATC	3 cut(s)	352, 453, 520
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	3 cut(s)	350, 451, 518
MboII	GAAGA	2 cut(s)	636, 662
MflI	RGATCY	1 cut(s)	518
MluCI	AATT	4 cut(s)	18, 83, 92, 485
MnlI	CCTC	6 cut(s)	101, 472, 509, 535, 567, 629
Mph1103I	ATGCAT	1 cut(s)	150
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
NdeII	GATC	3 cut(s)	350, 451, 518
NlaIII	CATG	3 cut(s)	384, 395, 462
NlaIV	GGNNCC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	241, 607
PkrI	GCNGC	2 cut(s)	206, 282
PsiI	TTATAA	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	2 cut(s)	299, 310
RsaNI	GTAC	2 cut(s)	298, 309
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	205, 281
Sau3AI	GATC	3 cut(s)	350, 451, 518
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	2 cut(s)	198, 372
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	4 cut(s)	18, 83, 92, 485
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	3 cut(s)	199, 302, 530
TaqI	TCGA	2 cut(s)	90, 540
TasI	AATT	4 cut(s)	18, 83, 92, 485
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	241, 607
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	204, 280
TspDTI	ATGAA	3 cut(s)	21, 90, 333
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	3 cut(s)	83, 92, 485
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	1 cut(s)	462
XspI	CTAG	1 cut(s)	105
ZrmI	AGTACT	1 cut(s)	310
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.