Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011915.1

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4042

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011915.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ctgtcctccacaaagcaccgacctttaatcatggcggcaatgagtgatgatccggttcgtaaatggattctcaccgaaggaaatgcaacagagataataagaattagtcctataggcggtggttgcatcaatcgtgctagtcgttatgacactgatgctggttctttctttgttaaaacaaacaggagcattggaccatctatgtttgagggagaggctcttggtttaggcgccatgtttaaaaccggatcaattcgtgtccctaagccattcaaggttggccctctacctactggtggttcttacatcattatggagtttattgactttggtttatccagaggtaatcagtctgatctaggcaggaagcttgctgagatgcataagactggaaaatctgagaaaggttttggttttgaagttaacaatacaataggcagcactccgcagataaacacttggtcatcagattggattcagttttatggggagcatagactgggttatcagttgcagctggccgtggaccgatatggtgatagtaccatttatgaaaaaggacaaagattagtgaagagtatgggacctctctttgataatatagtgattgagccatgcctgttacatggggacttatggagcggaaatatcagctctgacaagaagggagagccagttatacttgacccggcatgttactatggacataatgaggctgaatttggaatgtcgtggtgtgctggctttggtggatctttctacagttcctatttcgaggtgatgcccaagcaaccagggtttgagaaaaggaaagacctctacatcttgtatcattacttgaatcattataacctctttggttctggttatcgttcctctgcaatgtccataatagatgactatcttcggatgttaaaagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

307

Amino Acids

34.25

Weight (kDa)

7.8

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	849
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	642
AciI	CCGC	4 cut(s)	35, 117, 446, 642
AclWI	GGATC	3 cut(s)	44, 256, 760
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	719
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	116, 296
AgsI	TTSAA	3 cut(s)	274, 419, 841
AjnI	CCWGG	1 cut(s)	793
AluBI	AGCT	4 cut(s)	370, 517, 654, 920
AluI	AGCT	4 cut(s)	370, 517, 654, 920
AlwI	GGATC	3 cut(s)	44, 256, 760
AoxI	GGCC	2 cut(s)	280, 519
ApeKI	GCWGC	2 cut(s)	438, 514
ApoI	RAATTY	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	194, 281, 526, 584
AsuC2I	CCSGG	1 cut(s)	689
AsuHPI	GGTGA	3 cut(s)	64, 548, 790
AvaII	GGWCC	3 cut(s)	194, 526, 584
BanI	GGYRCC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	450, 526
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	795
BcnI	CCSGG	1 cut(s)	689
BfaI	CTAG	2 cut(s)	138, 359
BfmI	CTRYAG	2 cut(s)	111, 760
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	3 cut(s)	36, 439, 515
BlsI	GCNGC	3 cut(s)	37, 440, 516
Bme1390I	CCNGG	2 cut(s)	689, 795
Bme18I	GGWCC	3 cut(s)	194, 526, 584
BmgT120I	GGNCC	4 cut(s)	194, 281, 526, 584
BmiI	GGNNCC	2 cut(s)	232, 585
BmrFI	CCNGG	2 cut(s)	689, 795
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	4 cut(s)	135, 145, 369, 771
BmuI	ACTGGG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	689
BsaBI	GATNNNNATC	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	522, 794
BsaWI	WCCGGW	2 cut(s)	52, 245
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 296
Bse1I	ACTGG	4 cut(s)	298, 394, 504, 674
Bse3DI	GCAATG	2 cut(s)	45, 888
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	2 cut(s)	522, 794
BseGI	GGATG	1 cut(s)	915
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	2 cut(s)	116, 296
BseMI	GCAATG	2 cut(s)	45, 888
BseMII	CTCAG	2 cut(s)	366, 390
BseNI	ACTGG	4 cut(s)	298, 394, 504, 674
BseXI	GCAGC	2 cut(s)	450, 526
BshFI	GGCC	2 cut(s)	282, 521
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	53, 246, 689
BslFI	GGGAC	3 cut(s)	245, 597, 644
BslI	CCNNNNNNNGG	2 cut(s)	116, 296
BsmFI	GGGAC	3 cut(s)	245, 597, 644
BsnI	GGCC	2 cut(s)	282, 521
Bsp143I	GATC	4 cut(s)	49, 248, 355, 752
BspACI	CCGC	4 cut(s)	35, 117, 446, 642
BspANI	GGCC	2 cut(s)	282, 521
BspCNI	CTCAG	2 cut(s)	367, 391
BspLI	GGNNCC	2 cut(s)	232, 585
BspPI	GGATC	3 cut(s)	44, 256, 760
BspT107I	GGYRCC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	642
BsrDI	GCAATG	2 cut(s)	45, 888
BsrI	ACTGG	4 cut(s)	298, 394, 504, 674
BssECI	CCNNGG	2 cut(s)	522, 794
BssMI	GATC	4 cut(s)	49, 248, 355, 752
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	1 cut(s)	569
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	372, 519, 742
BstDEI	CTNAG	4 cut(s)	264, 375, 399, 921
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	915
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	52, 251, 358, 755
BstMBI	GATC	4 cut(s)	49, 248, 355, 752
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	795
BstNSI	RCATGY	1 cut(s)	696
BstSCI	CCNGG	2 cut(s)	687, 793
BstSFI	CTRYAG	2 cut(s)	111, 760
BstV1I	GCAGC	2 cut(s)	450, 526
BstX2I	RGATCY	1 cut(s)	752
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	2 cut(s)	282, 521
BtgI	CCRYGG	1 cut(s)	522
BtsCI	GGATG	1 cut(s)	915
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	372, 519, 742
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	4 cut(s)	194, 281, 526, 584
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	5 cut(s)	31, 235, 615, 626, 693
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	4 cut(s)	264, 375, 399, 921
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	4 cut(s)	51, 250, 357, 754
DpnII	GATC	4 cut(s)	49, 248, 355, 752
DraI	TTTAAA	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco47I	GGWCC	3 cut(s)	194, 526, 584
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	384
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	5 cut(s)	34, 238, 618, 629, 696
FaqI	GGGAC	3 cut(s)	245, 597, 644
FatI	CATG	5 cut(s)	30, 234, 614, 625, 692
Fnu4HI	GCNGC	3 cut(s)	36, 439, 515
Fsp4HI	GCNGC	3 cut(s)	36, 439, 515
FspBI	CTAG	2 cut(s)	138, 359
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	36, 439, 515
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	282, 521
HapII	CCGG	3 cut(s)	53, 246, 689
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	5 cut(s)	34, 238, 618, 629, 696
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	368, 918
HinfI	GANTC	3 cut(s)	67, 475, 841
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	3 cut(s)	53, 246, 689
HphI	GGTGA	3 cut(s)	64, 548, 790
Hpy166II	GTNNAC	2 cut(s)	424, 526
Hpy188I	TCNGA	5 cut(s)	355, 400, 469, 658, 909
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	2 cut(s)	424, 526
HpyAV	CCTTC	2 cut(s)	71, 658
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4V	TGCA	5 cut(s)	86, 126, 382, 514, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	4 cut(s)	264, 375, 399, 921
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	5 cut(s)	34, 238, 618, 629, 696
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	49, 248, 355, 752
LmnI	GCTCC	3 cut(s)	186, 490, 639
Lsp1109I	GCAGC	2 cut(s)	450, 526
LweI	GCATC	4 cut(s)	135, 145, 369, 771
MaeI	CTAG	2 cut(s)	138, 359
MaeIII	GTNAC	2 cut(s)	621, 695
MalI	GATC	4 cut(s)	51, 250, 357, 754
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	4 cut(s)	49, 248, 355, 752
MboII	GAAGA	2 cut(s)	586, 896
MflI	RGATCY	1 cut(s)	752
MluCI	AATT	3 cut(s)	102, 252, 719
Mly113I	GGCGCC	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	5 cut(s)	26, 174, 240, 423, 914
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	3 cut(s)	53, 246, 689
MspR9I	CCNGG	2 cut(s)	689, 795
MvaI	CCWGG	1 cut(s)	795
MwoI	GCNNNNNNNGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	689
NdeII	GATC	4 cut(s)	49, 248, 355, 752
NlaIII	CATG	5 cut(s)	34, 238, 618, 629, 696
NlaIV	GGNNCC	2 cut(s)	232, 585
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	67, 475, 841
PkrI	GCNGC	3 cut(s)	37, 440, 516
PluTI	GGCGCC	1 cut(s)	234
PpuMI	RGGWCCY	1 cut(s)	584
PsiI	TTATAA	1 cut(s)	849
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	2 cut(s)	232, 585
PspPI	GGNCC	4 cut(s)	194, 281, 526, 584
PspPPI	RGGWCCY	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	752
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	5 cut(s)	26, 174, 240, 423, 914
SatI	GCNGC	3 cut(s)	36, 439, 515
Sau3AI	GATC	4 cut(s)	49, 248, 355, 752
Sau96I	GGNCC	4 cut(s)	194, 281, 526, 584
ScrFI	CCNGG	2 cut(s)	689, 795
SfaNI	GCATC	4 cut(s)	135, 145, 369, 771
SfcI	CTRYAG	2 cut(s)	111, 760
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	3 cut(s)	194, 526, 584
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	102, 252, 719
SsiI	CCGC	4 cut(s)	35, 117, 446, 642
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	138, 359
StyD4I	CCNGG	2 cut(s)	687, 793
TaaI	ACNGT	1 cut(s)	764
TaqI	TCGA	1 cut(s)	774
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	3 cut(s)	102, 252, 719
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	67, 475, 841
Tru1I	TTAA	5 cut(s)	26, 174, 240, 423, 914
Tru9I	TTAA	5 cut(s)	26, 174, 240, 423, 914
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	2 cut(s)	438, 514
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	3 cut(s)	194, 526, 584
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	1 cut(s)	696
XspI	CTAG	2 cut(s)	138, 359
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.