Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005372

Physical Location & Seq

Genomic Coordinates Reverse (-)

47632895 .. 47637691

Gene Structure 4797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG224400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGTGATGATCCGGTTCGTAAATGGATTCTCACTGAAGGAAATGCAACAGAGATAATAAGAATTAGTCCTATAGGCGGTGGTTGCATCAATCGTGCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTTGTTAAAACAAACAGGAGCATTGGACCATCTATGTTTGAGGGAGAGGCTCTTGGTTTAGGCGCCATGTTTAAAACCGGATCAATTCGTGTCCCTAAGCCATTCAAGGTTGGCCCTCTACCTACTGGTGGTTCTTACATCATTATGGAGTTTATTGACTTTGGTTTATCCAGAGGTAATCAGTCTGATCTAGGCAGGAAGCTTGCTGAGATGCATAAGACTGGAAAATCTGAGAAAGGTTTTGGTTTTGAAGTTAACAATACAATAGGCAGCACTCCGCAGATAAACACTTGGTCATCAGATTGGATTCAGTTTTATGGGGAGCATAGACTGGGTTATCAGTTGCAGCTGGCCGTGGACCGATATGGTGATAGTACCATTTATGAAAAAGGACAAAGATTAGTGAAGAGTATGGGACCTCTCTTTGATAATATAGTGATTGAGCCATGCCTGTTACATGGGGACTTATGGAGCGGAAATATCAGCTCTGACAAGAAGGGAGAGCCAGTTATACTTGACCCGGCATGTTACTATGGACATAATGAGGCTGAATTTGGAATGTCGTGGTGTGCTGGCTTTGGTGGATCTTTCTACAGTTCCTATTTCGAGGTGATGCCCAAGCAACCAGGGTTTGAGAAAAGGAAAGACTTCTACATCTTGTATCATTACTTGAATCATTATAACCTCTTTGGTTCTGGTTATCGTTCCTCTGCAATGTCCATAATAGATGACTATCTTCGGATGTTAAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fructosamin_kin

Protein Analysis

294

Amino Acids

32.88

Weight (kDa)

6.6

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fructosamin_kin	PF03881	7 - 290	5.2e-98	Fructosamine kinase
APH	PF01636	22 - 232	4.9e-06	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61080 AT3G61080
fragaria_vesca	FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130 FvH4_7g13130
malus_domestica	MD07G1128500.v1.1
prunus_persica	Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1 Prupe.2G154600_v2.0.a1
pyrus_communis	pycom07g12430
rosa_chinensis	RchiOBHm_Chr1g0352261
rosa_laevigata	RLG00000028346
rosa_multiflora	Rmu_sc0011915.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303060
rosa_rugosa	Rorug01G0226200 Rorug01G0226300 Rorug01G0226300
rosa_samantha	Rh1AG240600 Rh1BG211500 Rh1CG224400 Rh1DG237900
rosa_wichuraiana	Rw1G020840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	603
AciI	CCGC	3 cut(s)	78, 407, 603
AclWI	GGATC	3 cut(s)	5, 217, 721
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	77, 257
AgsI	TTSAA	3 cut(s)	235, 380, 802
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	4 cut(s)	331, 478, 615, 881
AluI	AGCT	4 cut(s)	331, 478, 615, 881
AlwI	GGATC	3 cut(s)	5, 217, 721
AoxI	GGCC	2 cut(s)	241, 480
ApeKI	GCWGC	2 cut(s)	399, 475
ApoI	RAATTY	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	155, 242, 487, 545
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	509, 751
AvaII	GGWCC	3 cut(s)	155, 487, 545
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	411, 487
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	756
BcnI	CCSGG	1 cut(s)	650
BfaI	CTAG	2 cut(s)	99, 320
BfmI	CTRYAG	2 cut(s)	72, 721
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	400, 476
BlsI	GCNGC	2 cut(s)	401, 477
Bme1390I	CCNGG	2 cut(s)	650, 756
Bme18I	GGWCC	3 cut(s)	155, 487, 545
BmgT120I	GGNCC	4 cut(s)	155, 242, 487, 545
BmiI	GGNNCC	2 cut(s)	193, 546
BmrFI	CCNGG	2 cut(s)	650, 756
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	4 cut(s)	96, 106, 330, 732
BmuI	ACTGGG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	483, 755
BsaWI	WCCGGW	2 cut(s)	13, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 257
Bse1I	ACTGG	4 cut(s)	259, 355, 465, 635
Bse3DI	GCAATG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	2 cut(s)	483, 755
BseGI	GGATG	1 cut(s)	876
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	2 cut(s)	77, 257
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	2 cut(s)	327, 351
BseNI	ACTGG	4 cut(s)	259, 355, 465, 635
BseXI	GCAGC	2 cut(s)	411, 487
BshFI	GGCC	2 cut(s)	243, 482
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	14, 207, 650
BslFI	GGGAC	3 cut(s)	206, 558, 605
BslI	CCNNNNNNNGG	2 cut(s)	77, 257
BsmFI	GGGAC	3 cut(s)	206, 558, 605
BsnI	GGCC	2 cut(s)	243, 482
Bsp143I	GATC	4 cut(s)	10, 209, 316, 713
BspACI	CCGC	3 cut(s)	78, 407, 603
BspANI	GGCC	2 cut(s)	243, 482
BspCNI	CTCAG	2 cut(s)	328, 352
BspLI	GGNNCC	2 cut(s)	193, 546
BspPI	GGATC	3 cut(s)	5, 217, 721
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	849
BsrI	ACTGG	4 cut(s)	259, 355, 465, 635
BssECI	CCNNGG	2 cut(s)	483, 755
BssMI	GATC	4 cut(s)	10, 209, 316, 713
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	725
Bst6I	CTCTTC	1 cut(s)	530
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	333, 480, 703
BstDEI	CTNAG	4 cut(s)	225, 336, 360, 882
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	876
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	4 cut(s)	13, 212, 319, 716
BstMBI	GATC	4 cut(s)	10, 209, 316, 713
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	1 cut(s)	657
BstSCI	CCNGG	2 cut(s)	648, 754
BstSFI	CTRYAG	2 cut(s)	72, 721
BstV1I	GCAGC	2 cut(s)	411, 487
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	243, 482
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	33, 111
Cac8I	GCNNGC	3 cut(s)	333, 480, 703
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	4 cut(s)	155, 242, 487, 545
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	4 cut(s)	196, 576, 587, 654
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	4 cut(s)	225, 336, 360, 882
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	4 cut(s)	12, 211, 318, 715
DpnII	GATC	4 cut(s)	10, 209, 316, 713
DraI	TTTAAA	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco47I	GGWCC	3 cut(s)	155, 487, 545
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	754
EcoT22I	ATGCAT	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
FaeI	CATG	4 cut(s)	199, 579, 590, 657
FaqI	GGGAC	3 cut(s)	206, 558, 605
FatI	CATG	4 cut(s)	195, 575, 586, 653
Fnu4HI	GCNGC	2 cut(s)	400, 476
Fsp4HI	GCNGC	2 cut(s)	400, 476
FspBI	CTAG	2 cut(s)	99, 320
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	400, 476
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	243, 482
HapII	CCGG	3 cut(s)	14, 207, 650
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	199, 579, 590, 657
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	2 cut(s)	329, 879
HinfI	GANTC	3 cut(s)	28, 436, 802
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	3 cut(s)	14, 207, 650
HphI	GGTGA	2 cut(s)	509, 751
Hpy166II	GTNNAC	2 cut(s)	385, 487
Hpy188I	TCNGA	5 cut(s)	316, 361, 430, 619, 870
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	385, 487
HpyAV	CCTTC	2 cut(s)	32, 619
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4V	TGCA	5 cut(s)	47, 87, 343, 475, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	4 cut(s)	225, 336, 360, 882
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	199, 579, 590, 657
HspAI	GCGC	1 cut(s)	192
KasI	GGCGCC	1 cut(s)	191
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	10, 209, 316, 713
LmnI	GCTCC	3 cut(s)	147, 451, 600
Lsp1109I	GCAGC	2 cut(s)	411, 487
LweI	GCATC	4 cut(s)	96, 106, 330, 732
MaeI	CTAG	2 cut(s)	99, 320
MaeIII	GTNAC	2 cut(s)	582, 656
MalI	GATC	4 cut(s)	12, 211, 318, 715
MbiI	CCGCTC	1 cut(s)	603
MboI	GATC	4 cut(s)	10, 209, 316, 713
MboII	GAAGA	2 cut(s)	547, 857
MflI	RGATCY	1 cut(s)	713
MluCI	AATT	3 cut(s)	63, 213, 680
Mly113I	GGCGCC	1 cut(s)	192
MnlI	CCTC	9 cut(s)	163, 169, 255, 296, 558, 667, 730, 824, 847
Mph1103I	ATGCAT	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	776
MseI	TTAA	4 cut(s)	135, 201, 384, 875
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	3 cut(s)	14, 207, 650
MspR9I	CCNGG	2 cut(s)	650, 756
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	1 cut(s)	84
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	4 cut(s)	10, 209, 316, 713
NlaIII	CATG	4 cut(s)	199, 579, 590, 657
NlaIV	GGNNCC	2 cut(s)	193, 546
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	3 cut(s)	28, 436, 802
PkrI	GCNGC	2 cut(s)	401, 477
PluTI	GGCGCC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	545
PsiI	TTATAA	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	2 cut(s)	193, 546
PspPI	GGNCC	4 cut(s)	155, 242, 487, 545
PspPPI	RGGWCCY	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	135, 201, 384, 875
SatI	GCNGC	2 cut(s)	400, 476
Sau3AI	GATC	4 cut(s)	10, 209, 316, 713
Sau96I	GGNCC	4 cut(s)	155, 242, 487, 545
ScrFI	CCNGG	2 cut(s)	650, 756
SfaNI	GCATC	4 cut(s)	96, 106, 330, 732
SfcI	CTRYAG	2 cut(s)	72, 721
SfoI	GGCGCC	1 cut(s)	193
SinI	GGWCC	3 cut(s)	155, 487, 545
SmiMI	CAYNNNNRTG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	63, 213, 680
SsiI	CCGC	3 cut(s)	78, 407, 603
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	99, 320
StyD4I	CCNGG	2 cut(s)	648, 754
TaaI	ACNGT	1 cut(s)	725
TaqI	TCGA	1 cut(s)	735
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	3 cut(s)	63, 213, 680
TfiI	GAWTC	3 cut(s)	28, 436, 802
Tru1I	TTAA	4 cut(s)	135, 201, 384, 875
Tru9I	TTAA	4 cut(s)	135, 201, 384, 875
TscAI	CASTG	2 cut(s)	40, 118
TseI	GCWGC	2 cut(s)	399, 475
TspDTI	ATGAA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	40, 118
VpaK11BI	GGWCC	3 cut(s)	155, 487, 545
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	657
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	2 cut(s)	99, 320
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.