Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013709

Physical Location & Seq

Genomic Coordinates Forward (+)

23410220 .. 23411548

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACGATGGGGTCGGGTATGAACTTGATTACTACTGTGATTGGTTTTGGTATGAGTGCAACATTCATTATATTTGTCTGCACAAGAATCATTTGTGGGAGGCTGAGAGGTGTTGAATCAAGGCCTACGTTCGAGATTGAATCAAGAACTGATCTTGAGCAGCCAGAGAATCGGTCTAGTGGCCTTGAACAAATTGTGGTTGCTGCAATCCCGACCATGAAGTATGATCAGGAGGCCTTTAGTTCTTTAGAAGATGCACAGTGTTCAATATGTCTGGGGGAGTACCAGGAGAAAGAAGTACTGAGAATTATGCCGAAATGTGGTCACAGTTTTCACCTCACTTGCATTGATATATGGCTGAGGAAACAGTCTACCTGTCCAGTTTGCCGTTTACCTTTGAAAGAATCTTTCGGACCAAAACATGTGAGATCAGCAACTTTTACTGTGGCTCGATCTTTTGATGATTCTGAGAACGTTTCAACTCATGAACATTCTCAGCAGTGGCTATTACCGGCATCTGAACCAAATTCAGCAAGCAACAACATTAACAACCAAGTGCGGTTAGAACCTGCTTCTGGAAACCCCTCCGAACCTACTCAATCAAGAGACCCAGACACAAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

208

Amino Acids

23.24

Weight (kDa)

5.69

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	86 - 130	3.8e-10	RING-H2 zinc finger domain
zf-RING_2	PF13639	87 - 130	9.3e-15	Ring finger domain
zf-RING_11	PF17123	87 - 116	1.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	87 - 129	7.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	87 - 130	4.6e-06	zinc-RING finger domain
zf-C3HC4	PF00097	88 - 129	1.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	88 - 127	3.6e-08	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013709)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950 FvH4_7g13140 FvH4_7g13140
malus_domestica	MD01G1051600.v1.1 MD07G1128400.v1.1
prunus_persica	Prupe.2G154700_v2.0.a1
pyrus_communis	pycom01g07620 pycom07g12420
rosa_chinensis	RchiOBHm_Chr1g0352271
rosa_laevigata	RLG00000028345
rosa_multiflora	Rmu_sc0003774.1_g000003
rosa_roxburghii	Rroxscaffold_4G00303050
rosa_rugosa	Rorug01G0226300
rosa_samantha	Rh1AG240700 Rh1BG211600 Rh1CG224500 Rh1DG238000
rosa_wichuraiana	Rw1G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	371
AciI	CCGC	1 cut(s)	559
AclI	AACGTT	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	526
AfaI	GTAC	2 cut(s)	284, 300
AfiI	CCNNNNNNNGG	2 cut(s)	320, 575
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	6 cut(s)	116, 140, 188, 267, 400, 480
AjnI	CCWGG	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	600
AoxI	GGCC	3 cut(s)	122, 181, 234
ApeKI	GCWGC	2 cut(s)	160, 203
ApoI	RAATTY	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	172, 190
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	2 cut(s)	161, 204
BlsI	GCNGC	2 cut(s)	162, 205
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	244, 524
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 575
Bse118I	RCCGGY	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	320, 575
BseMII	CTCAG	5 cut(s)	95, 293, 350, 459, 509
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	172, 190
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	124, 183, 236
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	320, 575
BsmAI	GTCTC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	124, 183, 236
Bso31I	GGTCTC	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	151, 226, 428, 452
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	3 cut(s)	124, 183, 236
BspCNI	CTCAG	5 cut(s)	96, 294, 351, 460, 508
BspHI	TCATGA	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	511
BssMI	GATC	4 cut(s)	151, 226, 428, 452
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	5 cut(s)	37, 261, 329, 369, 445
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	5 cut(s)	104, 302, 359, 468, 495
BstKTI	GATC	4 cut(s)	154, 229, 431, 455
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	4 cut(s)	151, 226, 428, 452
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	172, 190
BsuRI	GGCC	3 cut(s)	124, 183, 236
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	2 cut(s)	266, 506
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	283, 299
CviAII	CATG	3 cut(s)	217, 422, 485
CviJI	RGCY	8 cut(s)	103, 124, 163, 183, 236, 358, 449, 505
CviKI_1	RGCY	8 cut(s)	103, 124, 163, 183, 236, 358, 449, 505
CviQI	GTAC	2 cut(s)	283, 299
DdeI	CTNAG	5 cut(s)	104, 302, 359, 468, 495
DpnI	GATC	4 cut(s)	153, 228, 430, 454
DpnII	GATC	4 cut(s)	151, 226, 428, 452
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eco147I	AGGCCT	2 cut(s)	124, 236
Eco31I	GGTCTC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	220, 425, 488
FatI	CATG	3 cut(s)	216, 421, 484
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	371
Fnu4HI	GCNGC	2 cut(s)	161, 204
Fsp4HI	GCNGC	2 cut(s)	161, 204
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	2 cut(s)	161, 204
HaeIII	GGCC	3 cut(s)	124, 183, 236
HapII	CCGG	1 cut(s)	512
Hin1II	CATG	3 cut(s)	220, 425, 488
HinfI	GANTC	6 cut(s)	87, 116, 140, 169, 404, 464
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	372, 392
Hpy188I	TCNGA	4 cut(s)	413, 469, 520, 589
Hpy188III	TCNNGA	8 cut(s)	133, 144, 155, 211, 230, 485, 576, 603
Hpy8I	GTNNAC	2 cut(s)	372, 392
HpyCH4III	ACNGT	5 cut(s)	37, 261, 329, 369, 445
HpyCH4IV	ACGT	2 cut(s)	128, 474
HpyCH4V	TGCA	5 cut(s)	59, 81, 206, 257, 345
HpyF3I	CTNAG	5 cut(s)	104, 302, 359, 468, 495
HpySE526I	ACGT	2 cut(s)	128, 474
Hsp92II	CATG	3 cut(s)	220, 425, 488
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	151, 226, 428, 452
Lsp1109I	GCAGC	2 cut(s)	172, 190
LweI	GCATC	2 cut(s)	244, 524
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	2 cut(s)	128, 474
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	4 cut(s)	153, 228, 430, 454
MboI	GATC	4 cut(s)	151, 226, 428, 452
MboII	GAAGA	1 cut(s)	263
MluCI	AATT	3 cut(s)	192, 306, 526
MnlI	CCTC	6 cut(s)	93, 101, 226, 347, 354, 595
MseI	TTAA	1 cut(s)	546
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
NdeII	GATC	4 cut(s)	151, 226, 428, 452
NlaIII	CATG	3 cut(s)	220, 425, 488
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	425
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	2 cut(s)	124, 236
PciI	ACATGT	1 cut(s)	421
PfeI	GAWTC	6 cut(s)	87, 116, 140, 169, 404, 464
PkrI	GCNGC	2 cut(s)	162, 205
PscI	ACATGT	1 cut(s)	421
Psp1406I	AACGTT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	413
RsaI	GTAC	2 cut(s)	284, 300
RsaNI	GTAC	2 cut(s)	283, 299
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	161, 204
Sau3AI	GATC	4 cut(s)	151, 226, 428, 452
Sau96I	GGNCC	1 cut(s)	413
ScaI	AGTACT	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	287
SetI	ASST	8 cut(s)	112, 131, 339, 377, 397, 477, 571, 595
SfaNI	GCATC	2 cut(s)	244, 524
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	192, 306, 526
SseBI	AGGCCT	2 cut(s)	124, 236
SsiI	CCGC	1 cut(s)	559
SspMI	CTAG	1 cut(s)	177
StuI	AGGCCT	2 cut(s)	124, 236
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	5 cut(s)	37, 261, 329, 369, 445
TaiI	ACGT	2 cut(s)	131, 477
TaqI	TCGA	2 cut(s)	132, 451
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	3 cut(s)	192, 306, 526
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	6 cut(s)	87, 116, 140, 169, 404, 464
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	2 cut(s)	266, 506
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	160, 203
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	35, 55, 233, 501
TspRI	CASTG	2 cut(s)	266, 506
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	371
XspI	CTAG	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.