Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016383

Physical Location & Seq

Genomic Coordinates Forward (+)

4539701 .. 4543876

Gene Structure 4176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATATCTTCAGGGATAAACCTGGTGATGACGGTGATTGGGTTCGCGGTAAGCACCATGTTCATAGTGTTCGTGTGTACCAGGCTTGTCTGTGCTCGGATTCACCTCAGTGTATCTAGACGCTCCTTCCCCATAGCTTCCAGATCTGATCTCAATATTCTGGAACGGGGATTGCATGGCGTTGAACCTGTAGTAATAGCCAACTTTCCAACAAAGAAGTACAATGATGCATTTTTTTCAGCTGTAGAAGATGCTCAATGCACTGTTTGCCTTGCGGAATACCATGGTGATGATGTATTGCGGATCCTCCCCTACTGTGAACACTCCTTCCATGTGACCTGTATAGACATATGGCTTCAGCAGCATTCCACATGTCCTGTTTGTAGAATATCATTGCGCGAGTTTCCTGAGATAAAACGCCTCATGCAACCCTTGTCCTGTTCGGCTATTCGATCTCATTATGGTACAGAGTCCTTCAATACCCTTTCTTATCGCTATCTCTTGAATAGTCGCACATCAAGAACTCATGAAAACCATGGTATGGACCCCATTCAAGAAGAGCATGCAGCATCAGAGGGTGATGTAACAGATGCCAGGGAGAATAGCTCCCCCTTAACTGAGAGTAATCAGAGATCTCTAAGGACTAGGGAAATAAGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

6.35

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05950
malus_domestica	MD02G1247900.v1.1 MD07G1068500.v1.1
prunus_persica	Prupe.2G086200_v2.0.a1
pyrus_communis	pycom02g21200 pycom07g05270
rosa_chinensis	RchiOBHm_Chr1g0333171
rosa_laevigata	RLG00000029621
rosa_roxburghii	Rroxscaffold_4G00317720
rosa_rugosa	Rorug01G0107900
rosa_samantha	Rh1AG130900 Rh1BG100100 Rh1CG124700 Rh1DG136300
rosa_wichuraiana	Rw0G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccII	CGCG	2 cut(s)	47, 399
AciI	CCGC	3 cut(s)	47, 275, 301
AclWI	GGATC	2 cut(s)	298, 311
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	3 cut(s)	79, 221, 466
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	4 cut(s)	185, 478, 505, 554
AjnI	CCWGG	3 cut(s)	21, 80, 593
AleI	CACNNNNGTG	1 cut(s)	108
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	3 cut(s)	137, 242, 606
AluI	AGCT	3 cut(s)	137, 242, 606
Alw21I	GWGCWC	1 cut(s)	97
AlwI	GGATC	2 cut(s)	298, 311
ApeKI	GCWGC	2 cut(s)	361, 566
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	5 cut(s)	37, 46, 95, 299, 590
AvaII	GGWCC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	373, 578
BciT130I	CCWGG	3 cut(s)	23, 82, 595
BfaI	CTAG	2 cut(s)	117, 645
BfmI	CTRYAG	2 cut(s)	189, 243
BglII	AGATCT	2 cut(s)	143, 632
BisI	GCNGC	2 cut(s)	362, 567
BlsI	GCNGC	2 cut(s)	363, 568
Bme1390I	CCNGG	3 cut(s)	23, 82, 595
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	2 cut(s)	305, 546
BmrFI	CCNGG	3 cut(s)	23, 82, 595
BmsI	GCATC	4 cut(s)	217, 241, 578, 580
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BsaJI	CCNNGG	3 cut(s)	283, 535, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	3 cut(s)	23, 82, 595
BseDI	CCNNGG	3 cut(s)	283, 535, 594
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	121, 399, 609
BseXI	GCAGC	2 cut(s)	373, 578
Bsh1236I	CGCG	2 cut(s)	47, 399
BsiHKAI	GWGCWC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	5 cut(s)	143, 148, 303, 452, 632
Bsp19I	CCATGG	2 cut(s)	283, 535
BspACI	CCGC	3 cut(s)	47, 275, 301
BspCNI	CTCAG	3 cut(s)	120, 400, 610
BspFNI	CGCG	2 cut(s)	47, 399
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	305, 546
BspPI	GGATC	2 cut(s)	298, 311
BspQI	GCTCTTC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	283, 535, 594
BssMI	GATC	5 cut(s)	143, 148, 303, 452, 632
BssT1I	CCWWGG	2 cut(s)	283, 535
Bst2UI	CCWGG	3 cut(s)	23, 82, 595
Bst4CI	ACNGT	3 cut(s)	34, 265, 317
Bst6I	CTCTTC	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	4 cut(s)	107, 408, 618, 638
BstDSI	CCRYGG	2 cut(s)	283, 535
BstFNI	CGCG	2 cut(s)	47, 399
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	5 cut(s)	146, 151, 306, 455, 635
BstMBI	GATC	5 cut(s)	143, 148, 303, 452, 632
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 361
BstNI	CCWGG	3 cut(s)	23, 82, 595
BstNSI	RCATGY	2 cut(s)	375, 566
BstSCI	CCNGG	3 cut(s)	21, 80, 593
BstSFI	CTRYAG	2 cut(s)	189, 243
BstUI	CGCG	2 cut(s)	47, 399
BstV1I	GCAGC	2 cut(s)	373, 578
BstX2I	RGATCY	3 cut(s)	143, 303, 632
BstYI	RGATCY	3 cut(s)	143, 303, 632
BtgI	CCRYGG	2 cut(s)	283, 535
BtsIMutI	CAGTG	2 cut(s)	115, 261
Cac8I	GCNNGC	1 cut(s)	564
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	3 cut(s)	78, 220, 465
CviAII	CATG	9 cut(s)	58, 176, 284, 332, 372, 424, 527, 536, 563
CviJI	RGCY	7 cut(s)	85, 137, 200, 242, 355, 446, 606
CviKI_1	RGCY	7 cut(s)	85, 137, 200, 242, 355, 446, 606
CviQI	GTAC	3 cut(s)	78, 220, 465
DdeI	CTNAG	4 cut(s)	107, 408, 618, 638
DpnI	GATC	5 cut(s)	145, 150, 305, 454, 634
DpnII	GATC	5 cut(s)	143, 148, 303, 452, 632
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	2 cut(s)	283, 535
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	21, 80, 593
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	283, 535
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	283, 535
FaeI	CATG	9 cut(s)	61, 179, 287, 335, 375, 427, 530, 539, 566
FatI	CATG	9 cut(s)	57, 175, 283, 331, 371, 423, 526, 535, 562
FauNDI	CATATG	1 cut(s)	350
Fnu4HI	GCNGC	2 cut(s)	362, 567
Fsp4HI	GCNGC	2 cut(s)	362, 567
FspBI	CTAG	2 cut(s)	117, 645
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	2 cut(s)	362, 567
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	9 cut(s)	61, 179, 287, 335, 375, 427, 530, 539, 566
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	2 cut(s)	100, 470
HphI	GGTGA	5 cut(s)	37, 46, 95, 299, 590
Hpy166II	GTNNAC	2 cut(s)	78, 320
Hpy188I	TCNGA	4 cut(s)	99, 148, 574, 630
Hpy188III	TCNNGA	8 cut(s)	117, 141, 161, 407, 502, 519, 527, 554
Hpy8I	GTNNAC	2 cut(s)	78, 320
HpyAV	CCTTC	3 cut(s)	136, 337, 484
HpyCH4III	ACNGT	3 cut(s)	34, 265, 317
HpyCH4V	TGCA	5 cut(s)	175, 230, 261, 427, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 361
HpyF3I	CTNAG	4 cut(s)	107, 408, 618, 638
Hsp92II	CATG	9 cut(s)	61, 179, 287, 335, 375, 427, 530, 539, 566
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	143, 148, 303, 452, 632
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	128, 611
Lsp1109I	GCAGC	2 cut(s)	373, 578
LweI	GCATC	4 cut(s)	217, 241, 578, 580
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	2 cut(s)	117, 645
MaeIII	GTNAC	2 cut(s)	334, 583
MalI	GATC	5 cut(s)	145, 150, 305, 454, 634
MboI	GATC	5 cut(s)	143, 148, 303, 452, 632
MboII	GAAGA	2 cut(s)	260, 569
MflI	RGATCY	3 cut(s)	143, 303, 632
MhlI	GDGCHC	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	116, 317, 431, 568
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	1 cut(s)	614
MslI	CAYNNNNRTG	2 cut(s)	108, 288
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	3 cut(s)	23, 82, 595
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	23, 82, 595
MvnI	CGCG	2 cut(s)	47, 399
MwoI	GCNNNNNNNGC	2 cut(s)	267, 361
NcoI	CCATGG	2 cut(s)	283, 535
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	5 cut(s)	143, 148, 303, 452, 632
NlaIII	CATG	9 cut(s)	61, 179, 287, 335, 375, 427, 530, 539, 566
NlaIV	GGNNCC	2 cut(s)	305, 546
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	2 cut(s)	375, 566
OliI	CACNNNNGTG	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	566
PagI	TCATGA	1 cut(s)	526
PciI	ACATGT	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	552
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	363, 568
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
PscI	ACATGT	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	21, 80, 593
PspGI	CCWGG	3 cut(s)	21, 80, 593
PspN4I	GGNNCC	2 cut(s)	305, 546
PspPI	GGNCC	1 cut(s)	544
PsuI	RGATCY	3 cut(s)	143, 303, 632
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	79, 221, 466
RsaNI	GTAC	3 cut(s)	78, 220, 465
RseI	CAYNNNNRTG	2 cut(s)	108, 288
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	2 cut(s)	362, 567
Sau3AI	GATC	5 cut(s)	143, 148, 303, 452, 632
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	3 cut(s)	23, 82, 595
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	7 cut(s)	24, 108, 139, 190, 244, 341, 608
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	4 cut(s)	217, 241, 578, 580
SfcI	CTRYAG	2 cut(s)	189, 243
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	108, 288
SphI	GCATGC	1 cut(s)	566
SsiI	CCGC	3 cut(s)	47, 275, 301
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	2 cut(s)	117, 645
StyD4I	CCNGG	3 cut(s)	21, 80, 593
StyI	CCWWGG	2 cut(s)	283, 535
TaaI	ACNGT	3 cut(s)	34, 265, 317
TaqI	TCGA	1 cut(s)	451
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	2 cut(s)	115, 268
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	361, 566
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	52, 543
TspRI	CASTG	2 cut(s)	115, 268
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	116
XceI	RCATGY	2 cut(s)	375, 566
XspI	CTAG	2 cut(s)	117, 645
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.